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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10044#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1867 fasta sequence
[CCTCGCGACAGCGCCGCCCCAAAAACCCTCAAAACCCCGGCGGCGGCGGCGGCGGCGGCGGAGTAGTCGGCGGCGGCGGCGAGATGGCGACGCGGGTGAAGGACGTGGCGCGGCGGTCGAGCAAGAAGTACGTCGACGAGGCGCTGTACCGGCGGCTGTTCCGCCGGGGCTCCACGCCGCAGGCCGTGCGGGAGGAGGTGGACGGCTTCCTCGACAGCCGGAAGCGCGCCTTCAAGTGGGAGGTCGGCGTCTGCGTCCGCCGCCTCCGGAAGCAGGCCCTCTACCGCCCCGCCCTCAAGCTTTCTGAAGTCATGGCAAGAAGAGGCATGAATCCTACAGTCAGTGACCAGGCAATCCGCCTTGATCTCGTTGCCAAATCAAGAGGCATTGCTGCTGCTGAGAAGTACTTCCTGGACCTCCCAGAAACTTCCAAAACTCATCTCACATATGGTGCTCTTCTTAACTGTTACTGCAAAGACTTAATGACTGAGAAGGCTGAAGCCCTTATGGGAAAAATGAAGGAACTCAACTTTGCTTTCACTGCCATGTGCTATAACAGCTTAATGACACTATACACGAAAGTCAACCAACATGAGAAGGTCCCTAGTGTCATCCAGGATATGAAAGCCGATGATGTGTTGCCTGATATTTATACCTATAATGTTTGGATGAGGGCGCTTGCAGCTCGTGTAGACATAAAAGGGGTTGAGAGGGTGATTGAAGAGATGAAACGGGATGGTCGTGTTACTCCTGATTGGACAACCTACAGTAACCTGGCTTCTATATATGTTGATGCTGGACTGTTTGAGAAAGCAGAAGCTGCCCTGAAGGAGCTGGAGAAGTGGAACACTAGCAATGATCTTGAAGCATACCAGTTCCTCATTACATTATATGCAAGAACACAAAATTTAGTGGAAGTTCATCGTGTTTGGCGATCATTGAAGCGGAATCAACCAAGAAGGGCAAACATGAGTTACCTTAACATGATTCAAGCCTTGGCAAATTTGAAGGATCTGCCTGGTGCTGAGGCCTGTTTCAAAGAGTGGGAAGCTCAGTACATCAATCCACCTAAGACTAACACAAAGGCCCCTGGGACAGCTGAAACGTCATCTAATGAATCTGATGTCAAGGCAACCAAGGACAAGGGCACAGATGGGGAATTGAAGCATCCTAAATATGATATCCGGGTTGCAAATGCCATGATCAAAGCATATATTACAGAGGGTATGTTTGACAAAGCTGTTGCTGTCAAGAAGCGTGCCAAGATGCGTGGTGGAAGACTTAACGCTAAGACCTGGGAAATTTTCATGGAACATTATCTCAAGGAAGGGGATCTCAAGATGGTTCACTGGTGCGCTGAT-CGTGCAATCAAGAAAGGGCACAGCGCTGGTAGGATCT-GGGTGCCACCACATGAAGTGACTGAAACCTTGATGGATTACTTTGAGAAGAACAAAGATGTAGATGGAGCTGAGAAATTTGTCGAGGTATTAAAGAAGGTACAGAAGGATTTGGGCACGGTGGTGTTTGAACCACTGGTTCGCACGTATGCAGCTGCTGGGAAGAAGCTCCCTGGGATGAGGCACCGCCTTAAGATCGAAAATGTGGAAGTCAGCGAGGAAACCGCCAAGCTGCTTGATTCTGTCTGTATTGATCAATGAACGTGCCTTAGATTTGGATTATGTAATAACATCAGGATGCATGCAAATTGACATGGTTCTTCTGCAAAACCTGTAATAGTTGCTGTAAGCTGAAATTTAGCACTACATTTACTTTTGTTCCTCGGCTGTTTCGACCCAGTCCCCAGATGCTGAATGGTTGGTTTGAAATCTTCTTTCAGTTCCCATACCTATGGACTAATATATGAAGA]
[+] EMBL AK069513 [CCTCGCGACAGCGCCGCCCCAAAAACCCTCAAAACCCCGGCGGCGGCGGCGGCGGCGGCGGAGTAGTCGGCGGCGGCGGCGAGATGGCGACGCGGGTGAAGGACGTGGCGCGGCGGTCGAGCAAGAAGTACGTCGACGAGGCGCTGTACCGGCGGCTGTTCCGCCGGGGCTCCACGCCGCAGGCCGTGCGGGAGGAGGTGGACGGCTTCCTCGACAGCCGGAAGCGCGCCTTCAAGTGGGAGGTCGGCGTCTGCGTCCGCCGCCTCCGGAAGCAGGCCCTCTACCGCCCCGCCCTCAAGCTTTCTGAAGTCATGGCAAGAAGAGGCATGAATCCTACAGTCAGTGACCAGGCAATCCGCCTTGATCTCGTTGCCAAATCAAGAGGCATTGCTGCTGCTGAGAAGTACTTCCTGGACCTCCCAGAAACTTCCAAAACTCATCTCACATATGGTGCTCTTCTTAACTGTTACTGCAAAGACTTAATGACTGAGAAGGCTGAAGCCCTTATGGGAAAAATGAAGGAACTCAACTTTGCTTTCACTGCCATGTGCTATAACAGCTTAATGACACTATACACGAAAGTCAACCAACATGAGAAGGTCCCTAGTGTCATCCAGGATATGAAAGCCGATGATGTGTTGCCTGATATTTATACCTATAATGTTTGGATGAGGGCGCTTGCAGCTCGTGTAGACATAAAAGGGGTTGAGAGGGTGATTGAAGAGATGAAACGGGATGGTCGTGTTACTCCTGATTGGACAACCTACAGTAACCTGGCTTCTATATATGTTGATGCTGGACTGTTTGAGAAAGCAGAAGCTGCCCTGAAGGAGCTGGAGAAGTGGAACACTAGCAATGATCTTGAAGCATACAAGTTCCTCATTACATTATATGCAAGAACACAAGATTTAGTGGAAGTTCATCGTGTTTGGCGATCATTGAAGCGGAATCAACCAAGAAGGGCAAACATGAGTTACCTTAACATGATTCAAGCCTTGGCAAATTTGAAGGATCTGCCTGGTGCTGAGGCCTGTTTCAAAGAGTGGGAAGCTCAGTACATCAATCCACCTAAGACTAACACAAAGGCCCCTGGGACAGCTGAAACGTCATCTAATGAATCTGATGTCAAGGCAACCAAGGACAAGGGCACAGATGGGGAATTGAAGCATCCTAAATATGATATCCGGGTTGCAAATGCCATGATCAAAGCATATATTACAGAGGGTATGTTTGACAAAGCTGTTGCTGTCAAGAAGCGTGCCAAGATGCGTGGTGGAAGACTTAACGCTAAGACCTGGGAAATTTTCATGGAACATTATCTCAAGGAAGGGGATCTCAAGATGGTTCACTGGTGCGCTGAT CGTGCAATCAAGAAAGGGCACAGCGCTGGTAGGATCT GGGTGCCACCACATGAAGTGACTGAAACCTTGATGGATTACTTTGAGAAGAACAAAGATGTAGATGGAGCTGAGAAATTTGTCGAGGTATTAAAGAAGGTACAGAAGGATTTGGGCACGGTGGTGTTTGAACCACTGGTTCGCACGTATGCAGCTGCTGGGAAGAAGCTCCCTGGGATGAGGCACCGCCTTAAGATCGAAAATGTGGAAGTCAGCGAGGAAACCGCCAAGCTGCTTGATTCTGTCTGTATTGATCAATGAACGTGCCTTAGATTTGGATTATGTAATAACATCAGGATGCATGCAAATTGACATGGTTCTTCTGCAAAACCTGTAATAGTTGCTGTAAGCTGAAATTTAGCACTACATTTACTTTTGTTCCTCGGCTGTTTCGACCCAGTCCCCAGATGCTGAATGGTTGGTTTGAAATCTTCTTTCAGTTCCCATACCTATGGACTAATATATGAAGA]
[+] EMBL AK104028 [ TCGCGACAGCGCCGCCCCAAAAACCCTCAAAACCCCGGCGGCGGCGGCGGCGGCGGCGGAGTAGTCGGCGGCGGCGGCGAGATGGCGACGCGGGTGAAGGACGTGGCGCGGCGGTCGAGCAAGAAGTACGTCGACGAGGCGCTGTACCGGCGGCTGTTCCGCCGGGGCTCCACGCCGCAGGCCGTGCGGGAGGAGGTGGACGGCTTCCTCGACAGCCGGAAGCGCGCCTTCAAGTGGGAGGTCGGCGTCTGCGTCCGCCGCCTCCGGAAGCAGGCCCTCTACCGCCCCGCCCTCAAGCTTTCTGAAGTCATGGCAAGAAGAGGCATGAATCCTACAGTCAGTGACCAGGCAATCCGCCTTGATCTCGTTGCCAAATCAAGAGGCATTGCTGCTGCTGAGAAGTACTTCCTGGACCTCCCAGAAACTTCCAAAACTCATCTCACATATGGTGCTCTTCTTAACTGTTACTGCAAAGACTTAATGACTGAGAAGGCTGAAGCCCTTATGGGAAAAATGAAGGAACTCAACTTTGCTTTCACTGCCATGTGCTATAACAGCTTAATGACACTATACACGAAAGTCAACCAACATGAGAAGGTCCCTAGTGTCATCCAGGATATGAAAGCCGATGATGTGTTGCCTGATATTTATACCTATAATGTTTGGATGAGGGCGCCTGCAGCTCGTGTAGACATAAAAGGGGTTGAGAGGGTGATTGAAGAGATGAAACGGGATGGTCGTGTTACTCCTGATTGGACAACCTACAGTAACCTGGCTTCTATATATGTTGATGCTGGACTGTTTGAGAAAGCAGAAGCTGCCCTGAAGGAGCTGGAGAAGTGGAACACTAGCAATGATCTTGAAGCATACCAGTTCCTCATTACATTATATGCAAGAACACAAAATTTAGTGGAAGTTCATCGTGTTTGGCGATCATTGAAGCGGAATCAACCAAGAAGGGCAAACATGAGTTACCTTAACATGATTCAAGCCTTGGCAAATTTGAAGGATCTGCCTGGTGCTGAGGCCTGTTTCAAAGAGTGGGAAGCTCAGTACATCAATCCACCTAAGACTAACACAAAGGCCCCTGGGACAGCTGAAACGTCATCTAATGAATCTGATGTCAAGGCAACCAAGGACAAGGGCACAGATGGGGAATTGAAGCATCCTAAATATGATATCCGGGTTGCAAATGCCATGATCAAAGCATATATTACAGAGGGTATGTTTGACAAAGCTGTTGCTGTCAAGAAGCGTGCCAAGATGCGTGGTGGAAGACTTAACGCTAAGACCTGGGAAATTTTCATGGAACATTATCTCAAGGAAGGGGATCTCAAGATGGTTCACTGGTGCGCTGAT CGTGCAATCAAGAAAGGGCACAGCGCTGGTAGGATCT GGGTGCCACCACATGAAGTGACTGAAACCTTGATGGATTACTTTGAGAAGAACAAAGATGTAGATGGAGCTGAGAAATTTGTCGAGGTATTAAAGAAGGTACAGAAGGATTTGGGCACGGTGGTGTTTGAACCACTGGTTCGCACGTATGCAGCTGCTGGGAAGAAGCTCCCTGGGATGAGGCACCGCCTTAAGATCGAAAATGTGGAAGTCAGCGAGGAAACCGCCAAGCTGCTTGATTCTGTCTGTATTGATCAATGAACGTGCCTTAGATTTGGATTATGTAATAACATCAGGATGCATGCAAATTGACATGGTTCTTCTGCAAAACCTGTAATAGTTGCTGTAAGCTGAAATTTAGCACTA ]
[+] EMBL AK119256 [ GCGCCGCCCCAAAAACCCTCAAAACCC CGGCGGCGGCGGCGGCGGCGGAGTAGTCGGCGGCGGCGGCGAGATGGCGACGCGGGTGAAGGACGTGGCGCGGCGGTCGAGCAAGAAGTACGTCGACGAGGCGCTGTACCGGCGGCTGTTCCGCCGGGGCTCCACGCCGCAGGCCGTGCGGGAGGAGGTGGACGGCTTCCTCGACAGCCGGAAGCGCGCCTTCAAGTGGGAGGTCGGCGTCTGCGTCCGCCGCCTCCGGAAGCAGGCCCTCTACCGCCCCGCCCTCAAGCTTTCTGAAGTCATGGCAAGAAGAGGCATGAATCCTACAGTCAGTGACCAGGCAATCCGCCTTGATCTCGTTGCCAAATCAAGAGGCATTGCTGCTGCTGAGAAGTACTTCCTGGACCTCCCAGAAACTTCCAAAACTCATCTCACATATGGTGCTCTTCTTAACTGTTACTGCAAAGACTTAATGACTGAGAAGGCTGAAGCCCTTATGGGAAAAATGAAGGAACTCAACTTTGCTTTCACTGCCATGTGCTATAACAGCTTAATGACACTATACACGAAAGTCAACCAACATGAGAAGGTCCCTAGTGTCATCCAGGATATGAAAGCCGATGATGTGTTGCCTGATATTTATACCTATAATGTTTGGATGAGGGCGCTTGCAGCTCGTGTAGACATAAAAGGGGTTGAGAGGGTGATTGAAGAGATGAAACGGGATGGTCGTGTTACTCCTGATTGGACAACCTACAGTAACCTGGCTTCTATATATGTTGATGCTGGACTGTTTGAGAAAGCAGAAGCTGCCCTGAAGGAGCTGGAGAAGTGGAACACTAGCAATGATCTTGAAGCATACCAGTTCCTCATTACATTATATGCAAGAACACAAAATTTAGTGGAAGTTCATCGTGTTTGGCGATCATTGAAGCGGAATCAACCAAGAAGGGCAAACATGAGTTACCTTAACATGATTCAAGCCTTGGCAAATTTGAAGGATCTGCCTGGTGCTGAGGCCTGTTTCAAAGAGTGGGAAGCTCAGTACATCAATCCACCTAAGACTAACACAAAGGCCCCTGGGACAGCTGAAACGTCATCTAATGAATCTGATGTCAAGGCAACCAAGGACAAGGGCACAGATGGGGAATTGAAGCATCCTAAATATGATATCCGGGTTGCAAATGCCATGATCAAAGCATATATTACAGAGGGTATGTTTGACAAAGCTGTTGCTGTCAAGAAGCGTGCCAAGATGCGTGGTGGAAGACTTAACGCTAAGACCTGGGAAATTTTCATGGAACATTATCTCAAGGAAGGGGATCTCAAGATGGTTCACTGGTGCGCTGAT CGTGCAATCAAGAAAGGGCACAGCGCTGGTAGGATCT GGGTGCCACCACATGAAGTGACTGAAACCTTGATGGATTACTTTGAGAAGAACAAAGATGTAGATGGAGCTGAGAAATTTGTCGAGGTATTAAAGAAGGTACAGAAGGATTTGGGCACGGTGGTGTTTGAACCACTGGTTCGCACGTATGCAGCTGCTGGGAAGAAGCTCCCTGGGATGAGGCACCGCCTTAAGATCGAAAATGTGGAAGTCAGCGAGGAAACCGCCAAGCTGCTTGATTCTGTCTGTATTGATCAATGAACGTGCCTTAGATTTGGATTATGTAATAACATCAGGATGCATGCAAATTGACATGGTTCTTCTGCAAAACCTGTAATAGTTGCTGTAAGCTGAAATTTAGCACTACATTTACTTTTGTTCCTCGGCTGTTTCGACCCAGTCCCCAGATGCTGAATGGTTGGTTTGAAATCTTCTTT ]
[+] EMBL CB669963 [ CGTCCCCTAGGCGCTGTACCGGCGGCTGTTCCGCCGGGGCTCCACGCCGCAGGCCGTGCGGGAGGAGGTGGACGGCTTCCTCGACAACCGGAAGCGCGCCTTCAAGTGGGAGGTCGGCGTCTGCGTCCGCCGCCTCCGGAAGCAGGCCCTCTACCGCCCCGCCCTCAAGCTTTCTGAAGTCATGGCAAGAAGAGGCATGAATCCTACAGTCAGTGACCAGGCAATCCGCCTTGATCTCGTTGCCAAATCAAGAGGCATTGCTGCTGCTGAGAAGTACTTCCTGGACCTCCCAGAAACTTCCAAAACTCATCTCACATATGGTGCTCTTCTTAACTGTTACTGCAAAGACTTAATGACTGAGAAGGCTGAAGCCCTTATGGGAAAAATGAAGGAACTCAACTTTGCTTTCACTGCCATGTGCTATAACAGCTTAATGACACTATACACGAAAGTCAACCAACATGAGAAGGTCCCTAGTGTCATCCAGGATATGAAAGCCGATGATGCGTTGCCTGATATTTATACCTATAATGTTTGGATGAGGGCGCTTGCAGCTCGTGTAGACATAAAAGGGGTTGAGAGGGTGATTGAAGAGATGAAACGGGATGGTCGCGTTACTCCTGATTGGACAACCTACAGTAACCTGGCTTCTATATATGTTGATGCTGGACTGTTTGACAAA ]
[-] EMBL CB669962 [ CAACCAAGGACAAGGGCACAGATGGGGAATTGAAGCATCCTAAATATGATATCCGGGTTGCAAATGCCATGATCAAAGCATATATTACAGAGGGTATGTTTGACAAAGCTGTTGCTGTCAAGAAGCGTGCCAAGATGCGTGGTGGAAGACTTAACGCTAAGACCTGGGAAATTTTCATGGAACATTATCTCAAGGAAGGGGATCTCAAGATGGTTCACTGGTGCGCTGAT CGTGCAATCAAGAAAGGGCACAGCGCTGGTAGGATTT GGGTGCCACCACATGAAGTGACTGAAACCTTGATGGATTACTTTGAGAAGAACAAAGATGTAGATGGAGCTGAGAAATTTGTCGAGGTATTAAAGAAGGTACAGAAGGATTTGGGCACGGTGGTGTTTGAACCACTGGTTCGCACGTATGCAGCTGCTGGGAAGAAGCTCCCTGGGATGAGGCACCGCCTTAAGATCGAAAATGTGGAAGTCAGCGAGGAAACCGCCAAGCTGCTTGATTCTGTCTGTATTGATCAATGAACGTGCCTTAGATTTGGATTATGTAATAACATCAGGATGCATGCAAATTGACATGGTTCTTTTGCAAAACCTGTAATAGTTGCTGTAAGCTGAAATTTAGCACTACATTTACTTTTGTTCCTCGGCTGTTTCGACCCAGTCCCCAGATGCTGAATG ]
[+] EMBL AU031302 [ TTCACTGNTGCGCTGATCCGTGCAATCAAGAAAGGNCACAGCGCTGGTAGGATCTGGGGTGCCACCACATGAAGTGACTGAAACCTTGATGGATTACTTTGAGAAGAACAAAGATGTAGATGGAGCTGAGAAATTTGTCGAGGTATTAAAGAAGGTACAGAAGGATTTGGGCACGGTGGTGTTTGAACCACTGGTTCGCACGTATGCAGCTGCTGGGAAGAAGCTCCCTGGGATGAGGCACCGCCTTAAGATCGAAAATGTGGAAGTCAGCGAGGAAACCGCCAAGCTGCTTGATTCTGTCTGTATTGATCAATGAACGTGCCTTAGATTTGGATTATGTAATAACATCAGGATGCATGCAAATTGACATGGTTCTTCTGCAAAACCTGTAATAGTTGCTGTAAGCTGAAATTTAGCACTACATTTACTTTTGTTCCTCGGCaaaaaaa ]
[+] EMBL AU031301 [ CAAGAAAGGGCACAGCGCTGGTAGGATCT GGGTGCCACCACATGAAGTGACTGAAACCTTGATGGATTACTTTGAGAAGAACAAAGATGTAGATGGAGCTGAGAAATTTGTCGAGGTATTAAAGAAGGTACAGAAGGATTTGGGCACGGTGGTGTTTGAACCACTGGTTCGCACGTATGCAGCTGCTGGGAAGAAGCTCCCTGGGATGAGGCACCGCCTTAAGATCGAAAATGTGGAAGTCAGCGAGGAAACCGCCAAGCTGCTTGATTCTGTCTGTATTGATCAATGAACGTGCCTTAGATTTGGATTATGTAATAACATCAGGATGCATGCAAATTGACATGGTTCTTCTGCAAAACCTGTAATAGTTGCTGTAAGCTGAAATTTAGCACTACATTTACTTTTGTTCCT ]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||