These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10044#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1867 fasta sequence [CCTCGCGACAGCGCCGCCCCAAAAACCCTCAAAACCCCGGCGGCGGCGGCGGCGGCGGCGGAGTAGTCGGCGGCGGCGGCGAGATGGCGACGCGGGTGAAGGACGTGGCGCGGCGGTCGAGCAAGAAGTACGTCGACGAGGCGCTGTACCGGCGGCTGTTCCGCCGGGGCTCCACGCCGCAGGCCGTGCGGGAGGAGGTGGACGGCTTCCTCGACAGCCGGAAGCGCGCCTTCAAGTGGGAGGTCGGCGTCTGCGTCCGCCGCCTCCGGAAGCAGGCCCTCTACCGCCCCGCCCTCAAGCTTTCTGAAGTCATGGCAAGAAGAGGCATGAATCCTACAGTCAGTGACCAGGCAATCCGCCTTGATCTCGTTGCCAAATCAAGAGGCATTGCTGCTGCTGAGAAGTACTTCCTGGACCTCCCAGAAACTTCCAAAACTCATCTCACATATGGTGCTCTTCTTAACTGTTACTGCAAAGACTTAATGACTGAGAAGGCTGAAGCCCTTATGGGAAAAATGAAGGAACTCAACTTTGCTTTCACTGCCATGTGCTATAACAGCTTAATGACACTATACACGAAAGTCAACCAACATGAGAAGGTCCCTAGTGTCATCCAGGATATGAAAGCCGATGATGTGTTGCCTGATATTTATACCTATAATGTTTGGATGAGGGCGCTTGCAGCTCGTGTAGACATAAAAGGGGTTGAGAGGGTGATTGAAGAGATGAAACGGGATGGTCGTGTTACTCCTGATTGGACAACCTACAGTAACCTGGCTTCTATATATGTTGATGCTGGACTGTTTGAGAAAGCAGAAGCTGCCCTGAAGGAGCTGGAGAAGTGGAACACTAGCAATGATCTTGAAGCATACCAGTTCCTCATTACATTATATGCAAGAACACAAAATTTAGTGGAAGTTCATCGTGTTTGGCGATCATTGAAGCGGAATCAACCAAGAAGGGCAAACATGAGTTACCTTAACATGATTCAAGCCTTGGCAAATTTGAAGGATCTGCCTGGTGCTGAGGCCTGTTTCAAAGAGTGGGAAGCTCAGTACATCAATCCACCTAAGACTAACACAAAGGCCCCTGGGACAGCTGAAACGTCATCTAATGAATCTGATGTCAAGGCAACCAAGGACAAGGGCACAGATGGGGAATTGAAGCATCCTAAATATGATATCCGGGTTGCAAATGCCATGATCAAAGCATATATTACAGAGGGTATGTTTGACAAAGCTGTTGCTGTCAAGAAGCGTGCCAAGATGCGTGGTGGAAGACTTAACGCTAAGACCTGGGAAATTTTCATGGAACATTATCTCAAGGAAGGGGATCTCAAGATGGTTCACTGGTGCGCTGAT-CGTGCAATCAAGAAAGGGCACAGCGCTGGTAGGATCT-GGGTGCCACCACATGAAGTGACTGAAACCTTGATGGATTACTTTGAGAAGAACAAAGATGTAGATGGAGCTGAGAAATTTGTCGAGGTATTAAAGAAGGTACAGAAGGATTTGGGCACGGTGGTGTTTGAACCACTGGTTCGCACGTATGCAGCTGCTGGGAAGAAGCTCCCTGGGATGAGGCACCGCCTTAAGATCGAAAATGTGGAAGTCAGCGAGGAAACCGCCAAGCTGCTTGATTCTGTCTGTATTGATCAATGAACGTGCCTTAGATTTGGATTATGTAATAACATCAGGATGCATGCAAATTGACATGGTTCTTCTGCAAAACCTGTAATAGTTGCTGTAAGCTGAAATTTAGCACTACATTTACTTTTGTTCCTCGGCTGTTTCGACCCAGTCCCCAGATGCTGAATGGTTGGTTTGAAATCTTCTTTCAGTTCCCATACCTATGGACTAATATATGAAGA] [+] EMBL AK069513 [CCTCGCGACAGCGCCGCCCCAAAAACCCTCAAAACCCCGGCGGCGGCGGCGGCGGCGGCGGAGTAGTCGGCGGCGGCGGCGAGATGGCGACGCGGGTGAAGGACGTGGCGCGGCGGTCGAGCAAGAAGTACGTCGACGAGGCGCTGTACCGGCGGCTGTTCCGCCGGGGCTCCACGCCGCAGGCCGTGCGGGAGGAGGTGGACGGCTTCCTCGACAGCCGGAAGCGCGCCTTCAAGTGGGAGGTCGGCGTCTGCGTCCGCCGCCTCCGGAAGCAGGCCCTCTACCGCCCCGCCCTCAAGCTTTCTGAAGTCATGGCAAGAAGAGGCATGAATCCTACAGTCAGTGACCAGGCAATCCGCCTTGATCTCGTTGCCAAATCAAGAGGCATTGCTGCTGCTGAGAAGTACTTCCTGGACCTCCCAGAAACTTCCAAAACTCATCTCACATATGGTGCTCTTCTTAACTGTTACTGCAAAGACTTAATGACTGAGAAGGCTGAAGCCCTTATGGGAAAAATGAAGGAACTCAACTTTGCTTTCACTGCCATGTGCTATAACAGCTTAATGACACTATACACGAAAGTCAACCAACATGAGAAGGTCCCTAGTGTCATCCAGGATATGAAAGCCGATGATGTGTTGCCTGATATTTATACCTATAATGTTTGGATGAGGGCGCTTGCAGCTCGTGTAGACATAAAAGGGGTTGAGAGGGTGATTGAAGAGATGAAACGGGATGGTCGTGTTACTCCTGATTGGACAACCTACAGTAACCTGGCTTCTATATATGTTGATGCTGGACTGTTTGAGAAAGCAGAAGCTGCCCTGAAGGAGCTGGAGAAGTGGAACACTAGCAATGATCTTGAAGCATACAAGTTCCTCATTACATTATATGCAAGAACACAAGATTTAGTGGAAGTTCATCGTGTTTGGCGATCATTGAAGCGGAATCAACCAAGAAGGGCAAACATGAGTTACCTTAACATGATTCAAGCCTTGGCAAATTTGAAGGATCTGCCTGGTGCTGAGGCCTGTTTCAAAGAGTGGGAAGCTCAGTACATCAATCCACCTAAGACTAACACAAAGGCCCCTGGGACAGCTGAAACGTCATCTAATGAATCTGATGTCAAGGCAACCAAGGACAAGGGCACAGATGGGGAATTGAAGCATCCTAAATATGATATCCGGGTTGCAAATGCCATGATCAAAGCATATATTACAGAGGGTATGTTTGACAAAGCTGTTGCTGTCAAGAAGCGTGCCAAGATGCGTGGTGGAAGACTTAACGCTAAGACCTGGGAAATTTTCATGGAACATTATCTCAAGGAAGGGGATCTCAAGATGGTTCACTGGTGCGCTGAT CGTGCAATCAAGAAAGGGCACAGCGCTGGTAGGATCT GGGTGCCACCACATGAAGTGACTGAAACCTTGATGGATTACTTTGAGAAGAACAAAGATGTAGATGGAGCTGAGAAATTTGTCGAGGTATTAAAGAAGGTACAGAAGGATTTGGGCACGGTGGTGTTTGAACCACTGGTTCGCACGTATGCAGCTGCTGGGAAGAAGCTCCCTGGGATGAGGCACCGCCTTAAGATCGAAAATGTGGAAGTCAGCGAGGAAACCGCCAAGCTGCTTGATTCTGTCTGTATTGATCAATGAACGTGCCTTAGATTTGGATTATGTAATAACATCAGGATGCATGCAAATTGACATGGTTCTTCTGCAAAACCTGTAATAGTTGCTGTAAGCTGAAATTTAGCACTACATTTACTTTTGTTCCTCGGCTGTTTCGACCCAGTCCCCAGATGCTGAATGGTTGGTTTGAAATCTTCTTTCAGTTCCCATACCTATGGACTAATATATGAAGA] [+] EMBL AK104028 [ TCGCGACAGCGCCGCCCCAAAAACCCTCAAAACCCCGGCGGCGGCGGCGGCGGCGGCGGAGTAGTCGGCGGCGGCGGCGAGATGGCGACGCGGGTGAAGGACGTGGCGCGGCGGTCGAGCAAGAAGTACGTCGACGAGGCGCTGTACCGGCGGCTGTTCCGCCGGGGCTCCACGCCGCAGGCCGTGCGGGAGGAGGTGGACGGCTTCCTCGACAGCCGGAAGCGCGCCTTCAAGTGGGAGGTCGGCGTCTGCGTCCGCCGCCTCCGGAAGCAGGCCCTCTACCGCCCCGCCCTCAAGCTTTCTGAAGTCATGGCAAGAAGAGGCATGAATCCTACAGTCAGTGACCAGGCAATCCGCCTTGATCTCGTTGCCAAATCAAGAGGCATTGCTGCTGCTGAGAAGTACTTCCTGGACCTCCCAGAAACTTCCAAAACTCATCTCACATATGGTGCTCTTCTTAACTGTTACTGCAAAGACTTAATGACTGAGAAGGCTGAAGCCCTTATGGGAAAAATGAAGGAACTCAACTTTGCTTTCACTGCCATGTGCTATAACAGCTTAATGACACTATACACGAAAGTCAACCAACATGAGAAGGTCCCTAGTGTCATCCAGGATATGAAAGCCGATGATGTGTTGCCTGATATTTATACCTATAATGTTTGGATGAGGGCGCCTGCAGCTCGTGTAGACATAAAAGGGGTTGAGAGGGTGATTGAAGAGATGAAACGGGATGGTCGTGTTACTCCTGATTGGACAACCTACAGTAACCTGGCTTCTATATATGTTGATGCTGGACTGTTTGAGAAAGCAGAAGCTGCCCTGAAGGAGCTGGAGAAGTGGAACACTAGCAATGATCTTGAAGCATACCAGTTCCTCATTACATTATATGCAAGAACACAAAATTTAGTGGAAGTTCATCGTGTTTGGCGATCATTGAAGCGGAATCAACCAAGAAGGGCAAACATGAGTTACCTTAACATGATTCAAGCCTTGGCAAATTTGAAGGATCTGCCTGGTGCTGAGGCCTGTTTCAAAGAGTGGGAAGCTCAGTACATCAATCCACCTAAGACTAACACAAAGGCCCCTGGGACAGCTGAAACGTCATCTAATGAATCTGATGTCAAGGCAACCAAGGACAAGGGCACAGATGGGGAATTGAAGCATCCTAAATATGATATCCGGGTTGCAAATGCCATGATCAAAGCATATATTACAGAGGGTATGTTTGACAAAGCTGTTGCTGTCAAGAAGCGTGCCAAGATGCGTGGTGGAAGACTTAACGCTAAGACCTGGGAAATTTTCATGGAACATTATCTCAAGGAAGGGGATCTCAAGATGGTTCACTGGTGCGCTGAT CGTGCAATCAAGAAAGGGCACAGCGCTGGTAGGATCT GGGTGCCACCACATGAAGTGACTGAAACCTTGATGGATTACTTTGAGAAGAACAAAGATGTAGATGGAGCTGAGAAATTTGTCGAGGTATTAAAGAAGGTACAGAAGGATTTGGGCACGGTGGTGTTTGAACCACTGGTTCGCACGTATGCAGCTGCTGGGAAGAAGCTCCCTGGGATGAGGCACCGCCTTAAGATCGAAAATGTGGAAGTCAGCGAGGAAACCGCCAAGCTGCTTGATTCTGTCTGTATTGATCAATGAACGTGCCTTAGATTTGGATTATGTAATAACATCAGGATGCATGCAAATTGACATGGTTCTTCTGCAAAACCTGTAATAGTTGCTGTAAGCTGAAATTTAGCACTA ] [+] EMBL AK119256 [ GCGCCGCCCCAAAAACCCTCAAAACCC CGGCGGCGGCGGCGGCGGCGGAGTAGTCGGCGGCGGCGGCGAGATGGCGACGCGGGTGAAGGACGTGGCGCGGCGGTCGAGCAAGAAGTACGTCGACGAGGCGCTGTACCGGCGGCTGTTCCGCCGGGGCTCCACGCCGCAGGCCGTGCGGGAGGAGGTGGACGGCTTCCTCGACAGCCGGAAGCGCGCCTTCAAGTGGGAGGTCGGCGTCTGCGTCCGCCGCCTCCGGAAGCAGGCCCTCTACCGCCCCGCCCTCAAGCTTTCTGAAGTCATGGCAAGAAGAGGCATGAATCCTACAGTCAGTGACCAGGCAATCCGCCTTGATCTCGTTGCCAAATCAAGAGGCATTGCTGCTGCTGAGAAGTACTTCCTGGACCTCCCAGAAACTTCCAAAACTCATCTCACATATGGTGCTCTTCTTAACTGTTACTGCAAAGACTTAATGACTGAGAAGGCTGAAGCCCTTATGGGAAAAATGAAGGAACTCAACTTTGCTTTCACTGCCATGTGCTATAACAGCTTAATGACACTATACACGAAAGTCAACCAACATGAGAAGGTCCCTAGTGTCATCCAGGATATGAAAGCCGATGATGTGTTGCCTGATATTTATACCTATAATGTTTGGATGAGGGCGCTTGCAGCTCGTGTAGACATAAAAGGGGTTGAGAGGGTGATTGAAGAGATGAAACGGGATGGTCGTGTTACTCCTGATTGGACAACCTACAGTAACCTGGCTTCTATATATGTTGATGCTGGACTGTTTGAGAAAGCAGAAGCTGCCCTGAAGGAGCTGGAGAAGTGGAACACTAGCAATGATCTTGAAGCATACCAGTTCCTCATTACATTATATGCAAGAACACAAAATTTAGTGGAAGTTCATCGTGTTTGGCGATCATTGAAGCGGAATCAACCAAGAAGGGCAAACATGAGTTACCTTAACATGATTCAAGCCTTGGCAAATTTGAAGGATCTGCCTGGTGCTGAGGCCTGTTTCAAAGAGTGGGAAGCTCAGTACATCAATCCACCTAAGACTAACACAAAGGCCCCTGGGACAGCTGAAACGTCATCTAATGAATCTGATGTCAAGGCAACCAAGGACAAGGGCACAGATGGGGAATTGAAGCATCCTAAATATGATATCCGGGTTGCAAATGCCATGATCAAAGCATATATTACAGAGGGTATGTTTGACAAAGCTGTTGCTGTCAAGAAGCGTGCCAAGATGCGTGGTGGAAGACTTAACGCTAAGACCTGGGAAATTTTCATGGAACATTATCTCAAGGAAGGGGATCTCAAGATGGTTCACTGGTGCGCTGAT CGTGCAATCAAGAAAGGGCACAGCGCTGGTAGGATCT GGGTGCCACCACATGAAGTGACTGAAACCTTGATGGATTACTTTGAGAAGAACAAAGATGTAGATGGAGCTGAGAAATTTGTCGAGGTATTAAAGAAGGTACAGAAGGATTTGGGCACGGTGGTGTTTGAACCACTGGTTCGCACGTATGCAGCTGCTGGGAAGAAGCTCCCTGGGATGAGGCACCGCCTTAAGATCGAAAATGTGGAAGTCAGCGAGGAAACCGCCAAGCTGCTTGATTCTGTCTGTATTGATCAATGAACGTGCCTTAGATTTGGATTATGTAATAACATCAGGATGCATGCAAATTGACATGGTTCTTCTGCAAAACCTGTAATAGTTGCTGTAAGCTGAAATTTAGCACTACATTTACTTTTGTTCCTCGGCTGTTTCGACCCAGTCCCCAGATGCTGAATGGTTGGTTTGAAATCTTCTTT ] [+] EMBL CB669963 [ CGTCCCCTAGGCGCTGTACCGGCGGCTGTTCCGCCGGGGCTCCACGCCGCAGGCCGTGCGGGAGGAGGTGGACGGCTTCCTCGACAACCGGAAGCGCGCCTTCAAGTGGGAGGTCGGCGTCTGCGTCCGCCGCCTCCGGAAGCAGGCCCTCTACCGCCCCGCCCTCAAGCTTTCTGAAGTCATGGCAAGAAGAGGCATGAATCCTACAGTCAGTGACCAGGCAATCCGCCTTGATCTCGTTGCCAAATCAAGAGGCATTGCTGCTGCTGAGAAGTACTTCCTGGACCTCCCAGAAACTTCCAAAACTCATCTCACATATGGTGCTCTTCTTAACTGTTACTGCAAAGACTTAATGACTGAGAAGGCTGAAGCCCTTATGGGAAAAATGAAGGAACTCAACTTTGCTTTCACTGCCATGTGCTATAACAGCTTAATGACACTATACACGAAAGTCAACCAACATGAGAAGGTCCCTAGTGTCATCCAGGATATGAAAGCCGATGATGCGTTGCCTGATATTTATACCTATAATGTTTGGATGAGGGCGCTTGCAGCTCGTGTAGACATAAAAGGGGTTGAGAGGGTGATTGAAGAGATGAAACGGGATGGTCGCGTTACTCCTGATTGGACAACCTACAGTAACCTGGCTTCTATATATGTTGATGCTGGACTGTTTGACAAA ] [-] EMBL CB669962 [ CAACCAAGGACAAGGGCACAGATGGGGAATTGAAGCATCCTAAATATGATATCCGGGTTGCAAATGCCATGATCAAAGCATATATTACAGAGGGTATGTTTGACAAAGCTGTTGCTGTCAAGAAGCGTGCCAAGATGCGTGGTGGAAGACTTAACGCTAAGACCTGGGAAATTTTCATGGAACATTATCTCAAGGAAGGGGATCTCAAGATGGTTCACTGGTGCGCTGAT CGTGCAATCAAGAAAGGGCACAGCGCTGGTAGGATTT GGGTGCCACCACATGAAGTGACTGAAACCTTGATGGATTACTTTGAGAAGAACAAAGATGTAGATGGAGCTGAGAAATTTGTCGAGGTATTAAAGAAGGTACAGAAGGATTTGGGCACGGTGGTGTTTGAACCACTGGTTCGCACGTATGCAGCTGCTGGGAAGAAGCTCCCTGGGATGAGGCACCGCCTTAAGATCGAAAATGTGGAAGTCAGCGAGGAAACCGCCAAGCTGCTTGATTCTGTCTGTATTGATCAATGAACGTGCCTTAGATTTGGATTATGTAATAACATCAGGATGCATGCAAATTGACATGGTTCTTTTGCAAAACCTGTAATAGTTGCTGTAAGCTGAAATTTAGCACTACATTTACTTTTGTTCCTCGGCTGTTTCGACCCAGTCCCCAGATGCTGAATG ] [+] EMBL AU031302 [ TTCACTGNTGCGCTGATCCGTGCAATCAAGAAAGGNCACAGCGCTGGTAGGATCTGGGGTGCCACCACATGAAGTGACTGAAACCTTGATGGATTACTTTGAGAAGAACAAAGATGTAGATGGAGCTGAGAAATTTGTCGAGGTATTAAAGAAGGTACAGAAGGATTTGGGCACGGTGGTGTTTGAACCACTGGTTCGCACGTATGCAGCTGCTGGGAAGAAGCTCCCTGGGATGAGGCACCGCCTTAAGATCGAAAATGTGGAAGTCAGCGAGGAAACCGCCAAGCTGCTTGATTCTGTCTGTATTGATCAATGAACGTGCCTTAGATTTGGATTATGTAATAACATCAGGATGCATGCAAATTGACATGGTTCTTCTGCAAAACCTGTAATAGTTGCTGTAAGCTGAAATTTAGCACTACATTTACTTTTGTTCCTCGGCaaaaaaa ] [+] EMBL AU031301 [ CAAGAAAGGGCACAGCGCTGGTAGGATCT GGGTGCCACCACATGAAGTGACTGAAACCTTGATGGATTACTTTGAGAAGAACAAAGATGTAGATGGAGCTGAGAAATTTGTCGAGGTATTAAAGAAGGTACAGAAGGATTTGGGCACGGTGGTGTTTGAACCACTGGTTCGCACGTATGCAGCTGCTGGGAAGAAGCTCCCTGGGATGAGGCACCGCCTTAAGATCGAAAATGTGGAAGTCAGCGAGGAAACCGCCAAGCTGCTTGATTCTGTCTGTATTGATCAATGAACGTGCCTTAGATTTGGATTATGTAATAACATCAGGATGCATGCAAATTGACATGGTTCTTCTGCAAAACCTGTAATAGTTGCTGTAAGCTGAAATTTAGCACTACATTTACTTTTGTTCCT ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||