These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10054#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 3028 fasta sequence [TTCAGCGAGCCAGAGAGGAAACGAACCGATCGATCAGGCCGTCGCTCCGCTCGCCGCCGCGCGACGCGACGCGACGCGACACGCCGGAGACGGACGACGAGCGCTTTGCCTTCCCCGCGCGCGCGCGCGCGCGCACGGAGGCGGACGCTGGTCGGTTTGGTCGGGTGCGACCGGGAACGGCGGCCATGGCGCGCGGCGGGGGCGGCGGGTGCTGCCCGCCGATGGATCTGATGCGGTCGGAGGCGATGCAGCTGGTGCAGGTCATCATCCCCACGGAGTCGGCGCACCTCACCGTCTCCTACCTCGGCGAACTCGGCCTCCTCCAGTTGAAAGACCTTAACGCAGACAAGAGTCCTTTTCAACGAACATATGCTGCCCAGATAAAAAGGTGTGGTGAAATGGCTCGCAAATTAAGATTTTTCAAAGAACAAATGTCCAAAGCTGGCATATCAACTTCTGCACAATTAACTGAAATTTCGTTGGACTTTGATGATTTGGAGATAAAGCTTGGAGAACTGGAAGCTGAACTAGCTGAAGTTAATGCAAACAATGAAAAGTTAAAGCGGACCTACAATGAGCTGTTGGAGTACAGTACTGTTCTTCAAAAGGCTGGTGAATTTTTCTATTCGGCTCAAAGAAGTGCTGCGGCGCAATAGAGAGAAATGGAGGCAAATCAATCTGGTGAGAGTTCACTGGAGAGCCCTCTGCTGGAGCAGGATACGTTAACAGATGCATCAAAACAAGTGAAGCTTGGATCATTGAGTGGTCTTGTACCAAAGGAAAAGGCAATGGCTTTTGAACGCATCTTATTCCGTGCCACGAGGGGAAACATTTTCCTCAGACAAGAGTCTGTTGATGAACCTGTCACTGACCCAGTCTCTGGAGAAAAGGTTGCCAAAAATGCATTTGTTATTTTCTACTCTGGGGATAGAGCAAAAGCCAAAATTCTGAAGATATGTGATGCGTTCAACGCAAATCGCTACCCATTTCCAGAAGATGTTGCTAGACAATTACATGCTGTTCAGGAGGTATCTGCAAAGATATCAGAGTTAAAGGCAACAATTGACATGGGATTAGCACATCGTGACAATATATTGAAAAATATCGCGTCTGAGTTTGAGAATTGGAACCGTCTGGCAAATAAGGAAAAAATAATTTACCACACTTTGAACATGTTGAGTGTTGATGTGACAAAGAAATGCTTAGTTGGTGAGGGCTGGAGTCCAGTTTTTGCAACAACTCAGATCCAAGATGCGCTCCAGCGAGCTACTCTTGATAGCAAATCCCAAGTTGGTTCAATTTTTCAAGTTCTCAACACAACAGAATCTCCCCCGACATATTTCCAGACAAATAAGTTCACTTCGGCTTTCCAGGAAATTGTTGATGCATACGGGATAGCCAAATATCAAGAAGCAAACCCTGGTGTATTCACTATTGTCACTTTTCCTTTCTTATTTGCTGTCATGTTTGGAGATTGGGGACATGGAATTTGCATATTGGTTTCGACACTCTATCTGATAATCCGAGAGAAGAAATTTGCTTCACAGAAACTTGGAGACATAATGGAGATGATGTTTGGTGGGCGCTATGTAATTATAATGATGGCACTCTTTTCAATCTATACAGGATTAATATACAATGAATTTTTCTCTGTTCCATTTGAGCTTTTTGGTAAATCTGCTTATGCATGCCGTGATCCTTCTTGTGGAGATGCTGCAACAGAAGGATTACTCAAGGTAAGACGGACATACCCTTTTGGTGTGGACCCTGTATGGCATGGCAGCCGCAGCGAGTTGCCGTTTCTCAACTCACTGAAGATGAAGATGTCAATTCTTCTTGGAGTTGCACAAATGAACCTTGGAATTGTGATTAGTTACTTTAATGCGAAATTCTTCAGGAACAGTGTTAATGTGTGGTACCAGTTCATCCCCCAGCTGATCTTCTTGAACAGCTTATTTGGTTACTTATCCATGCTCATCATTATCAAGTGGAGCACGGGGGCAAAAGCAGATCTGTACCATACTATGATATATATGTTCCTCAGTCCAACAGATGAACTTGGGGAGAACCAATTATTTCCTGGACAGAAAACAGTGCAGCTTGTTTTACTTCTGCTTGCTCTGGTGTCTGTTCCCTGGATGCTGATCCCAAAGCCATTTTTCTTGAAGATGGAGCATGAGCGAAGGCATCAAGGACAACAATATGCAATGCTTCAGAGCACAGATGACTCAGTGGTAGCGGAGATGGGACATCATAATGGCTCGAACCACCATGAGGAGTTCGAGTTCAGTGAAGTTTTTGTTCACCAGTTGATCCACACAATTGAGTTTGTTCTTGGGGCAGTCTCAAATACAGCCTCATATCTTCGTCTCTGGGCTCTCAGTCTTGCACACTCGGAGTTGTCAAGTGTATTCTATGACAAGGTTCTCCTCCTAGCTTTCGGGTACAACAACATTCTTATCCGCATCGCTGGCATTACCATCTTCATCTGTGCGACAGTTGGTGTCTTGCTTGTTATGGAGACCCTAAGTGCATTCCTTCACGCCTTAAGGCTACATTGGGTGGAGTTCCAGAACAAATTCTATGAGGGCGATGGATACAAGTTTGCGCCCTTCTCTTTCGCACTGATCAGTGAAGAGGAAGACTGAGTTTGCGCAATTATTGCATCTATTGTAGCGTGTAATTTCTTGGGGCGTCCTTTTTTCTCAAAGCGTCAAGTATTTATCACGGAAGAATCATAAACCTCCAGTTTGTTCCTTCATCAGGAAAGGGACTAGCAGCATCATTTTTTGCTTTGCTACGAATGATTCGTGGCAAGATGATTTTTTGGGTGGCCGTTGGCACATCGGGTGGCATCACCCTTATTTTGGTGTAAGGCTAATAAATAATAAGTAAATTCTGCACTCGGGTTGCCATTTGGGCAATTAGTTTTCTGCACATAAATAAACATTGTATCAAATGTTAATATTCCATTGGGTTCTTTTATTGTCAATAAAGAGTGCGGCCTACATTCTTTAAAAAAAAGAAA] [+] EMBL AK119298 [TTCAGCGAGCCAGAGAGGAAACGAACCGATCGATCAGGCCGTCGCTCCGCTCGCCGCCGCGCGACGCGACGCGACGCGACACGCCGGAGACGGACGACGAGCGCTTTGCCTTCCCCGCGCGCGCGCGCGCGCGCACGGAGGCGGACGCTGGTCGGTTTGGTCGGGTGCGACCGGGAACGGCGGCCATGGCGCGCGGCGGGGGCGGCGGGTGCTGCCCGCCGATGGATCTGATGCGGTCGGAGGCGATGCAGCTGGTGCAGGTCATCATCCCCACGGAGTCGGCGCACCTCACCGTCTCCTACCTCGGCGAACTCGGCCTCCTCCAGTTGAAAGACCTTAACGCAGACAAGAGTCCTTTTCAACGAACATATGCTGCCCAGATAAAAAGGTGTGGTGAAATGGCTCGCAAATTAAGATTTTTCAAAGAACAAATGTCCAAAGCTGGCATATCAACTTCTGCACAATTAACTGAAATTTCGTTGGACTTTGATGATTTGGAGATAAAGCTTGGAGAACTGGAAGCTGAACTAGCTGAAGTTAATGCAAACAATGAAAAGTTAAAGCGGACCTACAATGAGCTGTTGGAGTACAGTACTGTTCTTCAAAAGGCTGGTGAATTTTTCTATTCGGCTCAAAGAAGTGCTGCGGCGCAATAGAGAGAAATGGAGGCAAATCAATCTGGTGAGAGTTCACTGGAGAGCCCTCTGCTGGAGCAGGATACGTTAACAGATGCATCAAAACAAGTGAAGCTTGGATCATTGAGTGGTCTTGTACCAAAGGAAAAGGCAATGGCTTTTGAACGCATCTTATTCCGTGCCACGAGGGGAAACATTTTCCTCAGACAAGAGTCTGTTGATGAACCTGTCACTGACCCAGTCTCTGGAGAAAAGGTTGCCAAAAATGCATTTGTTATTTTCTACTCTGGGGATAGAGCAAAAGCCAAAATTCTGAAGATATGTGATGCGTTCAACGCAAATCGCTACCCATTTCCAGAAGATGTTGCTAGACAATTACATGCTGTTCAGGAGGTATCTGCAAAGATATCAGAGTTAAAGGCAACAATTGACATGGGATTAGCACATCGTGACAATATATTGAAAAATATCGCGTCTGAGTTTGAGAATTGGAACCGTCTGGCAAATAAGGAAAAAATAATTTACCACACTTTGAACATGTTGAGTGTTGATGTGACAAAGAAATGCTTAGTTGGTGAGGGCTGGAGTCCAGTTTTTGCAACAACTCAGATCCAAGATGCGCTCCAGCGAGCTACTCTTGATAGCAAATCCCAAGTTGGTTCAATTTTTCAAGTTCTCAACACAACAGAATCTCCCCCGACATATTTCCAGACAAATAAGTTCACTTCGGCTTTCCAGGAAATTGTTGATGCATACGGGATAGCCAAATATCAAGAAGCAAACCCTGGTGTATTCACTATTGTCACTTTTCCTTTCTTATTTGCTGTCATGTTTGGAGATTGGGGACATGGAATTTGCATATTGGTTTCGACACTCTATCTGATAATCCGAGAGAAGAAATTTGCTTCACAGAAACTTGGAGACATAATGGAGATGATGTTTGGTGGGCGCTATGTAATTATAATGATGGCACTCTTTTCAATCTATACAGGATTAATATACAATGAATTTTTCTCTGTTCCATTTGAGCTTTTTGGTAAATCTGCTTATGCATGCCGTGATCCTTCTTGTGGAGATGCTGCAACAGAAGGATTACTCAAGGTAAGACGGACATACCCTTTTGGTGTGGACCCTGTATGGCATGGCAGCCGCAGCGAGTTGCCGTTTCTCAACTCACTGAAGATGAAGATGTCAATTCTTCTTGGAGTTGCACAAATGAACCTTGGAATTGTGATTAGTTACTTTAATGCGAAATTCTTCAGGAACAGTGTTAATGTGTGGTACCAGTTCATCCCCCAGCTGATCTTCTTGAACAGCTTATTTGGTTACTTATCCATGCTCATCATTATCAAGTGGAGCACGGGGGCAAAAGCAGATCTGTACCATACTATGATATATATGTTCCTCAGTCCAACAGATGAACTTGGGGAGAACCAATTATTTCCTGGACAGAAAACAGTGCAGCTTGTTTTACTTCTGCTTGCTCTGGTGTCTGTTCCCTGGATGCTGATCCCAAAGCCATTTTTCTTGAAGATGGAGCATGAGCGAAGGCATCAAGGACAACAATATGCAATGCTTCAGAGCACAGATGACTCAGTGGTAGCGGAGATGGGACATCATAATGGCTCGAACCACCATGAGGAGTTCGAGTTCAGTGAAGTTTTTGTTCACCAGTTGATCCACACAATTGAGTTTGTTCTTGGGGCAGTCTCAAATACAGCCTCATATCTTCGTCTCTGGGCTCTCAGTCTTGCACACTCGGAGTTGTCAAGTGTATTCTATGACAAGGTTCTCCTCCTAGCTTTCGGGTACAACAACATTCTTATCCGCATCGCTGGCATTACCATCTTCATCTGTGCGACAGTTGGTGTCTTGCTTGTTATGGAGACCCTAAGTGCATTCCTTCACGCCTTAAGGCTACATTGGGTGGAGTTCCAGAACAAATTCTATGAGGGCGATGGATACAAGTTTGCGCCCTTCTCTTTCGCACTGATCAGTGAAGAGGAAGACTGAGTTTGCGCAATTATTGCATCTATTGTAGCGTGTAATTTCTTGGGGCGTCCTTTTTTCTCAAAGCGTCAAGTATTTATCACGGAAGAATCATAAACCTCCAGTTTGTTCCTTCATCAGGAAAGGGACTAGCAGCATCATTTTTTGCTTTGCTACGAATGATTCGTGGCAAGATGATTTTTTGGGTGGCCGTTGGCACATCGGGTGGCATCACCCTTATTTTGGTGTAAGGCTAATAAATAATAAGTAAATTCTGCACTCGGGTTGCCATTTGGGCAATTAGTTTTCTGCACATAAATAAACATTGTATCAAATGTTAATATTCCATTGGGTTCTTTTATTGTCAATAAAGAGTGCGGCC ] [+] EMBL AK101151 [ AGCCAGAGAGGAAACGAACCGATCGATCAGGCCGTCGCTCCGCTCGCCGCCGCGCGACGCGACGCGACGCGACACGCCGGAGACGGACGACGAGCGCTTTGCCTTCCCCGCGCGCGCGCGCGCGCGCACGGAGGCGGACGCTGGTCGGTTTGGTCGGGTGCGACCGGGAACGGCGGCCATGGCGCGCGGCGGGGGCGGCGGGTGCTGCCCGCCGATGGATCTGATGCGGTCGGAGGCGATGCAGCTGGTGCAGGTCATCATCCCCACGGAGTCGGCGCACCTCACCGTCTCCTACCTCGGCGAACTCGGCCTCCTCCAGTTGAAAGACCTTAACGCAGACAAGAGTCCTTTTCAACGAACATATGCTGCCCAGATAAAAAGGTGTGGTGAAATGGCTCGCAAATTAAGATTTTTCAAAGAACAAATGTCCAAAGCTGGCATATCAACTTCTGCACAATTAACTGAAATTTCGTTGGACTTTGATGATTTGGAGATAAAGCTTGGAGAACTGGAAGCTGAACTAGCTGAAGTTAATGCAAACAATGAAAAGTTAAAGCGGACCTACAATGAGCTGTTGGAGTACAGTACTGTTCTTCAAAAGGCTGGTGAATTTTTCTATTCGGCTCAAAGAAGTGCTGCGGCGCAACAGAGAGAAATGGAGGCAAATCAATCTGGTGAGAGTTCACTGGAGAGCCCTCTGCTGGAGCAGGATACGTTAACAGATGCATCAAAACAAGTGAAGCTTGGATCATTGAGTGGTCTTGTACCAAAGGAAAAGGCAATGGCTTTTGAACGCATCTTATTCCGTGCCACGAGGGGAAACATTTTCCTCAGACAAGAGTCTGTTGATGAACCTGTCACTGACCCAGTCTCTGGAGAAAAGGTTGCCAAAAATGCATTTGTTATTTTCTACTCTGGGGATAGAGCAAAAGCCAAAATTCTGAAGATATGTGATGCGTTCAACGCAAATCGCTACCCATTTCCAGAAGATGTTGCTAGACAATTACATGCTGTTCAGGAGGTATCTGCAAAGATATCAGAGTTAAAGGCAACAATTGACATGGGATTAGCACATCGTGACAATATATTGAAAAATATCGCGTCTGAGTTTGAGAATTGGAACCGTCTGGCAAATAAGGAAAAAATAATTTACCACACTTTGAACATGTTGAGTGTTGATGTGACAAAGAAATGCTTAGTTGGTGAGGGCTGGAGTCCAGTTTTTGCAACAACTCAGATCCAAGATGCGCTCCAGCGAGCTACTCTTGATAGCAAATCCCAAGTTGGTTCAATTTTTCAAGTTCTCAACACAACAGAATCTCCCCCGACATATTTCCAGACAAATAAGTTCACTTCGGCTTTCCAGGAAATTGTTGATGCATACGGGATAGCCAAATATCAAGAAGCAAACCCTGGTGTATTCACTATTGTCACTTTTCCTTTCTTATTTGCTGTCATGTTTGGAGATTGGGGACATGGAATTTGCATATTGGTTTCGACACTCTATCTGATAATCCGAGAGAAGAAATTTGCTTCACAGAAACTTGGAGACATAATGGAGATGATGTTTGGTGGGCGCTATGTAATTATAATGATGGCACTCTTTTCAATCTATACAGGATTAATATACAATGAATTTTTCTCTGTTCCATTTGAGCTTTTTGGTAAATCTGCTTATGCATGCCGTGATCCTTCTTGTGGAGATGCTGCAACAGAAGGATTACTCAAGGTAAGACGGACATACCCTTTTGGTGTGGACCCTGTATGGCATGGCAGCCGCAGCGAGTTGCCGTTTCTCAACTCACTGAAGATGAAGATGTCAATTCTTCTTGGAGTTGCACAAATGAACCTTGGAATTGTGATTAGTTACTTTAATGCGAAATTCTTCAGGAACAGTGTTAATGTGTGGTACCAGTTCATCCCCCAGCTGATCTTCTTGAACAGCTTATTTGGTTACTTATCCATGCTCATCATTATCAAGTGGAGCACGGGGGCAAAAGCAGATCTGTACCATACTATGATATATATGTTCCTCAGTCCAACAGATGAACTTGGGGAGAACCAATTATTTCCTGGACAGAAAACAGTGCAGCTTGTTTTACTTCTGCTTGCTCTGGTGTCTGTTCCCTGGATGCTGATCCCAAAGCCATTTTTCTTGAAGATGGAGCATGAGCGAAGGCATCAAGGACAACAATATGCAATGCTTCAGAGCACAGATGACTCAGTGGTAGCGGAGATGGGACATCATAATGGCTCGAACCACCATGAGGAGTTCGAGTTCAGTGAAGTTTTTGTTCACCAGTTGATCCACACAATTGAGTTTGTTCTTGGGGCAGTCTCAAATACAGCCTCATATCTTCGTCTCTGGGCTCTCAGTCTTGCACACTCGGAGTTGTCAAGTGTATTCTATGACAAGGTTCTCCTCCTAGCTTTCGGGTACAACAACATTCTTATCCGCATCGCTGGCATTACCATCTTCATCTGTGCGACAGTTGGTGTCTTGCTTGTTATGGAGACCCTAAGTGCATTCCTTCACGCCTTAAGGCTACATTGGGTGGAGTTCCAGAACAAATTCTATGAGGGCGATGGATACAAGTTTGCGCCCTTCTCTTTCGCACTGATCAGTGAAGAGGAAGACTGAGTTTGCGCAATTATTGCATCTATTGTAGCGTGTAATTTCTTGGGGCGTCCTTTTTTCTCAAAGCGTCAAGTATTTATCACGGAAGAATCATAAACCTCCAGTTTGTTCCTTCATCAGGAAAGGGACTAGCAGCATCATTTTTTGCTTTGCTACGAATGATTCGTGGCAAGATGATTTTTTGGGTGGCCGTTGGCACATCGGGTGGCATCACCCTTATTTTGGTGTAAGGCTAATAAATAATAAGTAAATTCTGCACTCGGGTTGCCATTTGGGCAATTAGTTTTCTGCACATAAATAAACATTGTATCAAATGTTAATATTCCATTGGGTTCTTTTATTGTCAATAAAGAGTGCGGCC ] [-] EMBL CB683583 [ GGAGATGGGACATCATAATGGCTCGAACCACCATGAGGAGTTCGAGTTCAGTGAAGTTTTTGTTCACCAGTTGATCCACACAATTGAGTTTGTTCTTGGGGCAGTCTCAAATACAGCCTCATATCTTCGTCTCTGGGCTCTCAGTCTTGCACACTCGGAGTTGTCAAGTGTATTCTATGACAAGGTTCTCCTCCTAGCTTTCGGGTACAACAACATTCTTATCCGCATCGCTGGCATTACCATCTTCATCTGTGCGACAGTTGGTGTCTTGCTTGTTATGGAGACCCTAAGTGCATTCCTTCACGCCTTAAGGCTACATTGGGTGGAGTTCCAGAACAAATTCTATGAGGGCGATGGATACAAGTTTGCGCCCTTCTCTTTCGCACTGATCAGTGAAGAGGAAGACTGAGTTTGCGCAATTATTGCATCTATTGTAGCGTGTAATTTCTTGGGGCGTCCTTTTTTCTCAAAGCGTCAAGTATTTATCACGGAAGAATCATAAACCTCCAGTTTGTTCCTTCATCAGGAAAGGGACTAGCAGCATCATTTTTTGCTTTGCTACGAATGATTCGTGGCAAGATGATTTTTTGGGTGGCCGTTGGCACATCGGGTGGCATCACCCTTATTTTGGTGTAAGGCTAATAAATAATAAGTAAATTCTGCACTCGGGTTGCCATTTGGGCAATTAGTTTTCTGCACATAAATAAACATTGTATCAAATGTTAATATTCCATTGGGTTCTTAAGTTGTCAATAAAGAGTGCGGCCTACATTCTTTAAAAAAAAGA ] [+] EMBL BE230598 [ TAAGGCTACATTGGGTGGAGTTCCAGAACAAATTCTATGAGGGCGATGGATACAAGTTTGCGCCCTTCTCTTTCGCACTGATCAGTGAAGAGGAAGACTGAGTTTGCGCAATTATTGCATCTATTGTAGCGTGTAATTTCTTGGGGCGTCCTTTTTTCTCAAAGCGTCAAGTATTTATCACGGAAGAATCATAAACCTCCAGTTTGTTCCTTCATCAGGAAAGGGACTAGCAGCATCATTTTTTGCTTTGCTACGAATGATTCGTGGCAAGATGATTTTTTGGGTGGCCGTTGGCACATCGGGTGGCATCACCCTTATTTTGGTGTAAGGCTAATAAATAATAAGTAAATTCTGCACTCGGGTTGCCATTTGGGCAATTAGTTTTCTGCACATAAATAAACATTGTATCAAATGTTAATATTCCATTGGGTTCTTTTATTG CAATAAAGAGTGCGGCCTACATTCTTTAAAAAAAAAAAA] [+] EMBL CB000981 [ AGACTGAGTTTGCGCAATTATTGCATCTATTGTAGCGTGTAATTTCTTGGGGCGTCCTTTTTTCTCAAAGCGTCAAGTATTTATCACGGAAGAATCATAAACCTCCAGTTTGTTCCTTCATCAGGAAAGGGACTAGCAGCATCATTTTTTGCTTTGCTACGAATGATTCGTGGCAAGATGATTTTTTGGGTGGCCGTTGGCACATCGGGTGGCATCACCCTTATTTTGGTGTAAGGCTAATAAATAATAAGTA ] consensusID : consensus_10054#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [TTCACCGTCAGCCGGGCCACCGCGATGTCGCGCGGCGGCGGCGGGTGCTGCCCGTCGATGGATCTGATGCGGTCGGAGGCGATGCAGCTGGTGCAGGTCATCATCCCGGCGGAGTCCGCGCACCTCGCCGTCTCCTACCTCGGCGACCTCGGCCTCCTCCAGTTCAAAGACCTTAATGCCGACAAAAGCCCATTCCAGCGGACTTATGCTTCCCAGATCAAGAGGTGTGGTGAAATGGCTCGCAAGTTGCGGTTTTTTAGGGAACAAATGTCAAAAGCTGCCATAGCAACTTCTACACAATTTTCAGGGACTTCTTTGGAAATTGATGATTTAGAGGTCAAACTTGGAGAACTAGAAGTTGAGCTGACTGAAGTTAATGCAAATAATGACAAGTTACAGAGGACATACAACGAGCTGGTGGAGTACAACATTGTTCTGCAGAAGGCTGGTGAATTTTTCTATTCAGCTCAACGAAGTGCAACAGAACAACAGAGGGAAATGTCAGCAGATCAATCTGGCGATTCTTCTCTGGAGAGTCCTTTATTGCAGCAGGAAATGGTGACAGATCCATCAAAACAAGTGAAGCTTGGTTCCCTGAGCGG] [+] EMBL CF303419 [TTCACCGTCAGCCGGGCCACCGCGATGTCGCGCGGCGGCGGCGGGTGCTGCCCGTCGATGGATCTGATGCGGTCGGAGGCGATGCAGCTGGTGCAGGTCATCATCCCGGCGGAGTCCGCGCACCTCGCCGTCTCCTACCTCGGCGACCTCGGCCTCCTCCAGTTCAAAGACCTTAATGCCGACAAAAGCCCATTCCAGCGGACTTATGCTTCCCAGATCAAGAGGTGTGGTGAAATGGCTCGCAAGTTGCGGTTTTTTAGGGAACAAATGTCAAAAGCTGCCATAGCAACTTCTACACAATTTTCAGGGACTTCTTTGGAAATTGATGATTTAGAGGTCAAACTTGGAGAACTAGAAGTTGAGCTGACTGAAGTTAATGCAAATAATGACAAGTTACAGAGGACATACAACGAGCTGGTGGAGTACAACATTGTTCTGCAGAAGGCTGGTGAATTTTTCTATTCAGCTCAACGAAGTGCAACAGAACAACAGAGGGAAATGTCAGCAGATCAATCTGGCGATTCTTCTCTGGAGAGTCCTTTATTGCAGCAGGAAATGGTGACAGATCCATCAAAACAAGTGAAGCTTGGTTCCCTGAGCGG] consensusID : consensus_10054#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence [TATCCGCATCGCTGGCATTACCATCTTCCATCTGTGCGACAGTTGGTGTCTTGCTTGTTATGGAGACCCTAAGTGCATTCCTTCACGCCTTAAGGCTACATTGGGTGGCGTTCCNGAACAAATTCTATGAGGGCGATGGATACAAGTTTGCGCCCTTCTCTTTCGCACTGATCAGTGAAGAGGAAGACTGAGTTTGCGCAATTATTGCATCTATTGTAGCGTGTAATTTCTTGGGGCGTCCTTTTTTCTCAAAGCGTCAAGTATTTATCACGGAAGAATCATAAACCTCCNGTTTGTTCCTTCATCAGGAAAGGGACTAGCAGCATCATTTTTTGCTTTGCTACGAATGATTCGTGGCNAGATGATTTTTTGGGTGGCCGTTGGCACATCGGGTGGCATCACCCTTATTTTGGTGTAAGGCTAATAAATAATAAGTAAATTCTGCACTCGGGTTGCCATTTGGGCAATTAGTTTTCTGCACATAAATAAACATTGTATCAAATGTTAATATTCCATTGGGTTCTTTTATTGTNAAAAAAGAAAAAAAAAAAAAN] [+] EMBL AU075796 [TATCCGCATCGCTGGCATTACCATCTTCCATCTGTGCGACAGTTGGTGTCTTGCTTGTTATGGAGACCCTAAGTGCATTCCTTCACGCCTTAAGGCTACATTGGGTGGCGTTCCNGAACAAATTCTATGAGGGCGATGGATACAAGTTTGCGCCCTTCTCTTTCGCACTGATCAGTGAAGAGGAAGACTGAGTTTGCGCAATTATTGCATCTATTGTAGCGTGTAATTTCTTGGGGCGTCCTTTTTTCTCAAAGCGTCAAGTATTTATCACGGAAGAATCATAAACCTCCNGTTTGTTCCTTCATCAGGAAAGGGACTAGCAGCATCATTTTTTGCTTTGCTACGAATGATTCGTGGCNAGATGATTTTTTGGGTGGCCGTTGGCACATCGGGTGGCATCACCCTTATTTTGGTGTAAGGCTAATAAATAATAAGTAAATTCTGCACTCGGGTTGCCATTTGGGCAATTAGTTTTCTGCACATAAATAAACATTGTATCAAATGTTAATATTCCATTGGGTTCTTTTATTGTNAAAAAAGAAAAAAAAAAAAAN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10054#0 TTCAGCGAGCCAGAGAGGAAACGAACCGATCGATCAGGCCGTCGCTCCGCTCGCCGCCGC 60 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 GCGACGCGACGCGACGCGACACGCCGGAGACGGACGACGAGCGCTTTGCCTTCCCCGCGC 120 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 GCGCGCGCGCGCGCACGGAGGCGGACGCTGGTCGGTTTGGTCGGGTGCGACCGGGAACGG 180 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 CGGCCATGGCGCGCGGCGGGGGCGGCGGGTGCTGCCCGCCGATGGATCTGATGCGGTCGG 240 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 AGGCGATGCAGCTGGTGCAGGTCATCATCCCCACGGAGTCGGCGCACCTCACCGTCTCCT 300 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 ACCTCGGCGAACTCGGCCTCCTCCAGTTGAAAGACCTTAACGCAGACAAGAGTCCTTTTC 360 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 AACGAACATATGCTGCCCAGATAAAAAGGTGTGGTGAAATGGCTCGCAAATTAAGATTTT 420 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 TCAAAGAACAAATGTCCAAAGCTGGCATATCAACTTCTGCACAATTAACTGAAATTTCGT 480 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 TGGACTTTGATGATTTGGAGATAAAGCTTGGAGAACTGGAAGCTGAACTAGCTGAAGTTA 540 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 ATGCAAACAATGAAAAGTTAAAGCGGACCTACAATGAGCTGTTGGAGTACAGTACTGTTC 600 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 TTCAAAAGGCTGGTGAATTTTTCTATTCGGCTCAAAGAAGTGCTGCGGCGCAATAGAGAG 660 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 AAATGGAGGCAAATCAATCTGGTGAGAGTTCACTGGAGAGCCCTCTGCTGGAGCAGGATA 720 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 CGTTAACAGATGCATCAAAACAAGTGAAGCTTGGATCATTGAGTGGTCTTGTACCAAAGG 780 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 AAAAGGCAATGGCTTTTGAACGCATCTTATTCCGTGCCACGAGGGGAAACATTTTCCTCA 840 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 GACAAGAGTCTGTTGATGAACCTGTCACTGACCCAGTCTCTGGAGAAAAGGTTGCCAAAA 900 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 ATGCATTTGTTATTTTCTACTCTGGGGATAGAGCAAAAGCCAAAATTCTGAAGATATGTG 960 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 ATGCGTTCAACGCAAATCGCTACCCATTTCCAGAAGATGTTGCTAGACAATTACATGCTG 1020 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 TTCAGGAGGTATCTGCAAAGATATCAGAGTTAAAGGCAACAATTGACATGGGATTAGCAC 1080 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 ATCGTGACAATATATTGAAAAATATCGCGTCTGAGTTTGAGAATTGGAACCGTCTGGCAA 1140 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 ATAAGGAAAAAATAATTTACCACACTTTGAACATGTTGAGTGTTGATGTGACAAAGAAAT 1200 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 GCTTAGTTGGTGAGGGCTGGAGTCCAGTTTTTGCAACAACTCAGATCCAAGATGCGCTCC 1260 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 AGCGAGCTACTCTTGATAGCAAATCCCAAGTTGGTTCAATTTTTCAAGTTCTCAACACAA 1320 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 CAGAATCTCCCCCGACATATTTCCAGACAAATAAGTTCACTTCGGCTTTCCAGGAAATTG 1380 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 TTGATGCATACGGGATAGCCAAATATCAAGAAGCAAACCCTGGTGTATTCACTATTGTCA 1440 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 CTTTTCCTTTCTTATTTGCTGTCATGTTTGGAGATTGGGGACATGGAATTTGCATATTGG 1500 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 TTTCGACACTCTATCTGATAATCCGAGAGAAGAAATTTGCTTCACAGAAACTTGGAGACA 1560 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 TAATGGAGATGATGTTTGGTGGGCGCTATGTAATTATAATGATGGCACTCTTTTCAATCT 1620 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 ATACAGGATTAATATACAATGAATTTTTCTCTGTTCCATTTGAGCTTTTTGGTAAATCTG 1680 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 CTTATGCATGCCGTGATCCTTCTTGTGGAGATGCTGCAACAGAAGGATTACTCAAGGTAA 1740 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 GACGGACATACCCTTTTGGTGTGGACCCTGTATGGCATGGCAGCCGCAGCGAGTTGCCGT 1800 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 TTCTCAACTCACTGAAGATGAAGATGTCAATTCTTCTTGGAGTTGCACAAATGAACCTTG 1860 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 GAATTGTGATTAGTTACTTTAATGCGAAATTCTTCAGGAACAGTGTTAATGTGTGGTACC 1920 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 AGTTCATCCCCCAGCTGATCTTCTTGAACAGCTTATTTGGTTACTTATCCATGCTCATCA 1980 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 TTATCAAGTGGAGCACGGGGGCAAAAGCAGATCTGTACCATACTATGATATATATGTTCC 2040 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 TCAGTCCAACAGATGAACTTGGGGAGAACCAATTATTTCCTGGACAGAAAACAGTGCAGC 2100 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 TTGTTTTACTTCTGCTTGCTCTGGTGTCTGTTCCCTGGATGCTGATCCCAAAGCCATTTT 2160 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 TCTTGAAGATGGAGCATGAGCGAAGGCATCAAGGACAACAATATGCAATGCTTCAGAGCA 2220 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 CAGATGACTCAGTGGTAGCGGAGATGGGACATCATAATGGCTCGAACCACCATGAGGAGT 2280 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 TCGAGTTCAGTGAAGTTTTTGTTCACCAGTTGATCCACACAATTGAGTTTGTTCTTGGGG 2340 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 CAGTCTCAAATACAGCCTCATATCTTCGTCTCTGGGCTCTCAGTCTTGCACACTCGGAGT 2400 consensus_10054#2 ------------------------------------------------------------ consensus_10054#1 ------------------------------------------------------------ consensus_10054#0 TGTCAAGTGTATTCTATGACAAGGTTCTCCTCCTAGCTTTCGGGTACAACAACATTCTTA 2460 consensus_10054#2 ----------------------------------------------------------TA 2 consensus_10054#1 --------------------------------------------------------TTCA 4 * consensus_10054#0 TCCGCATCGCTGGCATTACCATCTTC-ATCTGTGCGACAGTTGGTGTC--TTGCTTGTTA 2517 consensus_10054#2 TCCGCATCGCTGGCATTACCATCTTCCATCTGTGCGACAGTTGGTGTC--TTGCTTGTTA 60 consensus_10054#1 CCGTCAGCCGGGCCACCGCGATGTCGCGCGGCGGCGGCGGGTGCTGCCCGTCGATGGATC 64 * ** * * ** * ** * *** * * ** ** * * * * * * consensus_10054#0 TGGAGACCCTAAGTGCATTCCTTCACGCCTTAAGGCTACATTG-GGTGGAGTTCCAGAAC 2576 consensus_10054#2 TGGAGACCCTAAGTGCATTCCTTCACGCCTTAAGGCTACATTG-GGTGGCGTTCCNGAAC 119 consensus_10054#1 TGATGCGGTCGGAGGCGATGCAGC-TGGTGCAGGTCATCATCCCGGCGGAGTCCGCGCAC 123 ** * ** * * * * * * * *** ** ** ** * * ** consensus_10054#0 AAATTCTATGAGGGCGATGGATACAAGTTTGCGCCCTTCTCTTTCGCACTGATCAGTGAA 2636 consensus_10054#2 AAATTCTATGAGGGCGATGGATACAAGTTTGCGCCCTTCTCTTTCGCACTGATCAGTGAA 179 consensus_10054#1 ---CTCGCCGTCTCCTACCTCGGCGACCTCGGCCTCCTCCAGTTCAAAGACCTTAATGCC 180 ** * * * * * * * * * ** *** * * * ** consensus_10054#0 GAGGAAGACTGAGTTTGCGCAATTATTGCATCT---ATTGTAGCGTGTAAT-------TT 2686 consensus_10054#2 GAGGAAGACTGAGTTTGCGCAATTATTGCATCT---ATTGTAGCGTGTAAT-------TT 229 consensus_10054#1 GACAAAAGCCCATTCCAGCGGACTTATGCTTCCCAGATCAAGAGGTGTGGTGAAATGGCT 240 ** ** * * * * * *** ** ** **** * * consensus_10054#0 CTTGGGGCGTCCTTTTTTC-----------TCAAAG--CGTCA-AGTATTTATCACGGAA 2732 consensus_10054#2 CTTGGGGCGTCCTTTTTTC-----------TCAAAG--CGTCA-AGTATTTATCACGGAA 275 consensus_10054#1 CGCAAGTTGCGGTTTTTTAGGGAACAAATGTCAAAAGCTGCCATAGCAACTTCTACACAA 300 * * * ****** ***** * ** ** * * ** ** consensus_10054#0 GAATCATAAACCTCCA-GTTTGTTCCTTCATCAGGAAAGGGACTAGCAGCATCATTTTTT 2791 consensus_10054#2 GAATCATAAACCTCCN-GTTTGTTCCTTCATCAGGAAAGGGACTAGCAGCATCATTTTTT 334 consensus_10054#1 TTTTCAGGGACTTCTTTGGAAATTGATGATTTAGAGGTCAAACTTGGAGAACTAGAAGTT 360 *** ** ** * ** * * ** *** * ** * * ** consensus_10054#0 GCTTTG-CTACGAATGATTCGTGGCAAGATGATTTTTTGGGTGGCCGTTGGCACATCGGG 2850 consensus_10054#2 GCTTTG-CTACGAATGATTCGTGGCNAGATGATTTTTTGGGTGGCCGTTGGCACATCGGG 393 consensus_10054#1 GAGCTGACTGAAGTTAATGCAAATAATGACAAGTTACAGAG-GACATACAACGAGCTGGT 419 * ** ** * ** * ** * ** * * * * * ** consensus_10054#0 TGGCATCACCCTTATTTTGGTGTAAGGCTAATAAATAATAAGTAAATTCTGCACTCGGGT 2910 consensus_10054#2 TGGCATCACCCTTATTTTGGTGTAAGGCTAATAAATAATAAGTAAATTCTGCACTCGGGT 453 consensus_10054#1 GGAGTACAACATTGTTCTG-CAGAAGGCTGGTGAATTTT---TCTATTCAGCTCAACGAA 475 * ** * ** ** ** ****** * *** * * **** ** * * consensus_10054#0 TGCCATTTGGGCAATT-----AGTTTTCTGCACATAAATA-AACATTGTATCAAATGTTA 2964 consensus_10054#2 TGCCATTTGGGCAATT-----AGTTTTCTGCACATAAATA-AACATTGTATCAAATGTTA 507 consensus_10054#1 GTGCAACAGAACAACAGAGGGAAATGTCAGCAGATCAATCTGGCGATTCTTCTCTGGAGA 535 ** * *** * * ** *** ** *** * * ** * * consensus_10054#0 ATATTCCATTGGGTTCTTTTATTGTCAATAAAGAGTGCGGCCTACATTCTTTAAAAAAAA 3024 consensus_10054#2 ATATTCCATTGGGTTCTTTTATTGTNAAAAAAGAAAAAAAAAAAAAN------------- 554 consensus_10054#1 GTCCTTTATTGCAGCAGGAAATGGTGACAGATCCATCAAAACAAGTGAAGCTTGGTTCCC 595 * * **** ** ** * * * consensus_10054#0 GAAA--- 3028 consensus_10054#2 ------- consensus_10054#1 TGAGCGG 602 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||