These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10055#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1148 fasta sequence [CTCATCATCTATATCACGATCGATCACAAAGAGGTTAACAGTAACACATGGGGTTCGGCTCGAGGGAGATGGCCTGCGCGCTCGTGGCGCTGGTGCTCGGGCTCTGCTGCGTCGGCGGCGCACGGGCGACNGGGAGGATCGACGAGGGGCTGGAGGTGATGTGGGGCGACGGCCGGGGGAGCGTCTCGCCGGACGGGCAGGTGATGGCGCTGTCGCTCGACCACACCTCCGGCTCCGGGTGGAGGTCCAAGAACACGTACCTGTTCGCGCGCNTCGACCTGCAGATCAAGCTCGTCGCCAACAACTCCGCCGGCACGGTCACCACC-TGCTACTTCATGTCGGAAGGGGAGTTGGATATCCACGATGAGGTGGACCTGGAGTTCCTCGGCAACGTCACCGGGCAGCCGTACACGCTGCACACCAACGTCTTCGCCAATGGCACCGGCGGCAAAGAGCAGCAGTTCCACCTCTGGTTCGACCCCACCACCGACTTCCACACCTACTCCATCGTCTGGACCTCGCAGCACATCCTTGTGCTGGTGGACGGGACGCCGATCCGGGAGATGAAGAACCACGCGGACAAGGGGATCGCCTACCCGTCGTCNCAGCGGATGCGGCTGTACGGGAGCCTGTGGAACGCCGACGACTGGGCCACGCAGGGCGGGCGCGTCAAGACGGACTGGTCGCAGGCGCCGTTCGTCGCGCGGTACCGCAACTTCACCGCCACGGAAGCCGCGTCGTCGTCGTCGCCGGCAGGGTACGACCAGCAGATGGACGCCACGGCGCAGCAGGCGATGAAGTGGGCGCGCGACAAATACATGGTGTACGACTATTGCGCCGACAGCAAGCGGTTCCCGCAGGGNTTCCCGCCCGAGTGTTCCATGCCGTAGAGTGGAGTGGAGACGCGCCAAAGCCTCGGTGCACTTTGATGAACGCGGACTCGATCGAACTCACGCAGGGCACGCATTGACCTCGTTTTTTTATTTTTACTTCTCTTGATTGAATTGATTCATTCTTTCTATGTAAAGTAGATATATATATATATATATATATATATATATATATATATATATATGTATATGTATGCACGAAAGATTTAAAGAATGGAGTGTGAAAGAAAAAATATGTTTGCATTGCAAAAAAAAAAA] [+] EMBL OSC107321 [CTCATCATCTATATCACGATCGATCACAAAGAGGTTAACAGTAACACATGGGGTTCGGCTCGAGGGAGATGGCCTGCGCGCTCGTGGCGCTGGTGCTCGGGCTCTGCTGCGTCGGCGGCGCACGGGCGACNGGGAGGATCGACGAGGGGCTGGAGGTGATGTGGGGCGACGGCCGGGGGAGCGTCTCGCCGGACGGGCAGGTGATGGCGCTGTCGCTCGACCACANCTCCGGCTCCGGGTGGAGGTCCAAGAACACGTACCTNTTCGCGCGCNTCGACCTNCAGATCAAGCTNGTCGGCAACAACTTCGCCGGCANGGTCAACACCTTGCTANTTCATGTCGGAAGGGGAGTTGGATATCCA ] [+] EMBL AF443603 [ CATCTATATCACGATCGATCACAAAGAGGTTAACAGTAACACATGGGGTTCGGCTCGAGGGAGATGGCCTGCGCGCTCGTGGCGCTGGTGCTCGGGCTCTGCTGCGTCGGCGGCGCACGGGCGACGGGGAGGATCGACGAGGGGCTGGAGGTGATGTGGGGCGACGGCCGGGGGAGCGTCTCGCCGGACGGGCAGGTGATGGCGCTGTCGCTCGACCACACCTCCGGCTCCGGGTGGAGGTCCAAGAACACGTACCTGTTCGCGCGCGTCGACCTGCAGATCAAGCTCGTCGCCAACAACTCCGCCGGCACGGTCACCACC TGCTACTTCATGTCGGAAGGGGAGTGGGATATCCACGATGAGGTGGACCTGGAGTTCCTCGGCAACGTCACCGGGCAGCCGTACACGCTGCACACCAACGTCTTCGCCAATGGCACCGGCGGCAAAGAGCAGCAGTTCCACCTCTGGTTCGACCCCACCACCGACTTCCACACCTACTCCATCGTCTGGACCTCGCAGCACATCCTTGTGCTGGTGGACGGGACGCCGATCCGGGAGATGAAGAACCACGCGGACAAGGGGATCGCCTACCCGTCGTCNCAGCGGATGCGGCTGTACGGGAGCCTGTGGAACGCCGACGACTGGGCCACGCAGGGCGGGCGCGTCAAGACGGACTGGTCGCAGGCGCCGTTCGTCGCGCGGTACCGCAACTTCACCGCCACGGAAGCCGCGTCGTCGTCGTCGCCGGCAGGGTACGACCAGCAGATGGACGCCACGGCGCAGCAGGCGATGAAGTGGGCGCGCGACAAATACATGGTGTACGACTATTGCGCCGACAGCAAGCGGTTCCCGCAGGGNTTCCCGCCCGAGTGTTCCATGCCGTAGAGTGGAGTGGAGACGCGCCAAAGCCTCGGTGCACTTTGATGAACGCGGACTCGATCGAACTCACGCAGGGCACGCATTGACCTCGTTTTTTTATTTTTACTTCTCTTGATTGAATTGATTCATTCTTTCTATGTAAAGTAGATATATATATATATATATATATATATATATATATATATATATATGTATATGTATGCACGAAAGATTTAAAGAATGGAGTGTGAAAGAAAAAATATGTTTGCATTGCAAAAAAAAAAA] [+] EMBL C25954 [ CAAAGAGGTTAACAGTAACACATGGGGTTCGGCTCGAGGGAGATGGCCTGCGCGCTCGTGGCGCTGGTGCTCGGGCTCTGCTGCGTCGGCGGCGCACGGGCGACNGGGAGGATCGACGAGGGGCTGGAGGTGATGTGGGGCGACGGCCGGGGGAGCGTCTCGCCGGACGGGCAGGTGATGGCGCTGTCGCTCGACCACACCTCCGGCTCCGGGTGGAGGTCCAAGAACACGTACCTGTTCGCGCGCNTCGACCTGCAGATCAAGCTCGTCGCCAACAACTCCGCCGGCACGGTCACCACC TGCTACTTCATGTCGGAAGGGGAGTTGGATATCCACGATGAGGTGG ] consensusID : consensus_10055#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1133 fasta sequence [TTCACTTTCTCTTCTCATCATCTATATCACGATCGATCACAAAGAGGTTAACAGTAACACATGGGGTTCGGCTCGAGGGAGATGGCCTGCGCGCTCGTGGCGCTGGTGCTCGGGCTCTGCTGCGTCGGCGGCGCACGGGCGACGGGGAGGATCGACGAGGGGCTGGAGGTGATGTGGGGCGACGGCCGGGGGAGCGTCTCGCCGGACGGGCAGGTGATGGCGCTGTCGCTCGACCACACCTCCGGCTCCGGGTGGAGGTCCAAGAACACGTACCTGTTCGCGCGCGTCGACCTGCAGATCAAGCTCGTCGCCAACAACTCCGCCGGCACGGTCACCACCTGCTACTTCATGTCGGAAGGGGAGTGGGATATCCACGATGAGGTGGACCTGGAGTTCCTCGGCAACGTCACCGGGCAGCCGTACACGCTGCACACCAACGTCTTCGCCAATGGCACCGGGGGCAAAGAGCAGCAGTTCCACCTCTGGTTCGACCCCACCACCGACTTCCACACCTACTCCATCGTCTGGACCTCGCAGCACATCCTTGTGCTGGTGGACGGGACGCCGATCCGGGAGATGAAGAACCACGCGGACAAGGGGATCGCCTACCCGTCGTCGCAGCGGATGCGGCTGTACGGGAGCCTGTGGAACGCCGACGACTGGGCCACGCAGGGCGGGCGCGTCAAGACGGACTGGTCGCAGGCGCCGTTCGTCGCGCGGTACCGCAACTTCACCGCCACGGAAGCCGCGTCGTCGTCGTCGCCGGCAGGGTACGACCAGCAGATGGACGCCACGGCGCAGCAGGCGATGAAGTGGGCGCGCGACAACTACATGGTGTACGACTACTGCGCCGACAGCAAGCGGTTCCCGCAGGGCTTCCCGCCCGAGTGCTCCATGCCGTAGAGTGGAGTGGAGACGCGCCAAAGCCTCGGTGCACTTTGATGAACGCGGACTCGATCGAACTCACGCAGGGCACGCATTGACCTCGTTTTTTTATTTTTACTTCTCTTGATTGAATTGATTCATTCTTTCTATGTAAAGTAGATATATATATATATATATGTATATGTATGCACGAAAGATTTAAAGAATGGAGTGTGAAAGAAAAAATATGTTTGCATTGCAAAAAAAAA] [+] EMBL AK070734 [TTCACTTTCTCTTCTCATCATCTATATCACGATCGATCACAAAGAGGTTAACAGTAACACATGGGGTTCGGCTCGAGGGAGATGGCCTGCGCGCTCGTGGCGCTGGTGCTCGGGCTCTGCTGCGTCGGCGGCGCACGGGCGACGGGGAGGATCGACGAGGGGCTGGAGGTGATGTGGGGCGACGGCCGGGGGAGCGTCTCGCCGGACGGGCAGGTGATGGCGCTGTCGCTCGACCACACCTCCGGCTCCGGGTGGAGGTCCAAGAACACGTACCTGTTCGCGCGCGTCGACCTGCAGATCAAGCTCGTCGCCAACAACTCCGCCGGCACGGTCACCACCTGCTACTTCATGTCGGAAGGGGAGTGGGATATCCACGATGAGGTGGACCTGGAGTTCCTCGGCAACGTCACCGGGCAGCCGTACACGCTGCACACCAACGTCTTCGCCAATGGCACCGGGGGCAAAGAGCAGCAGTTCCACCTCTGGTTCGACCCCACCACCGACTTCCACACCTACTCCATCGTCTGGACCTCGCAGCACATCCTTGTGCTGGTGGACGGGACGCCGATCCGGGAGATGAAGAACCACGCGGACAAGGGGATCGCCTACCCGTCGTCGCAGCGGATGCGGCTGTACGGGAGCCTGTGGAACGCCGACGACTGGGCCACGCAGGGCGGGCGCGTCAAGACGGACTGGTCGCAGGCGCCGTTCGTCGCGCGGTACCGCAACTTCACCGCCACGGAAGCCGCGTCGTCGTCGTCGCCGGCAGGGTACGACCAGCAGATGGACGCCACGGCGCAGCAGGCGATGAAGTGGGCGCGCGACAACTACATGGTGTACGACTACTGCGCCGACAGCAAGCGGTTCCCGCAGGGCTTCCCGCCCGAGTGCTCCATGCCGTAGAGTGGAGTGGAGACGCGCCAAAGCCTCGGTGCACTTTGATGAACGCGGACTCGATCGAACTCACGCAGGGCACGCATTGACCTCGTTTTTTTATTTTTACTTCTCTTGATTGAATTGATTCATTCTTTCTATGTAAAGTAGATATATATATATATATATGTATATGTATGCACGAAAGATTTAAAGA ] [+] EMBL OSS1234A [ TATATCACGATCGATCACAAAGAGGTTAACAGTAACACATGGGGTTCGGCTCGAGGGAGATGGCCTGCGCGCTCGTGGCGCTGGTGCTCGGGCTCTNCTGCGTCGGCGGCGCACGGGCGACGGGGAGGATCGACGAGGGGCTGGAGGTGATGTGGGGCGACGGCCGGGGGAGCGTCTCGCCGGACGGGCAGGTGATGGCGCTGTCGCTCGACCACACCTCCGGCTCCGGGTGGAGGTCCAAGA ] [+] EMBL OSS1173A [ TATATCACGATCGATCACAAAGAGGTTAACAGTAACACATGGGGTTCGGCTCGNGGGAGATGGCCTGCGCGCTCGTGGCGCTGGTGCTCGGGCTCTGCTGCGTCGGCGGCGCACGGGCGACGGGGAGNATCGACGAGGGGCTGGAGGTGATGTGGNNCGACGGCCGNGGNAGCGTCTCGCC ] [+] EMBL AU075356 [ CTACTCCATCGTCTGNACCTCGCAGCACATCCTTGTGCTGGTGGACGGGACGCCGATCCGGGAGATGAAGAACCACCCGGANAAGGGGATCGCCTACCCGTCGTCGCAGCGGATGCGGCTGTACGGGAGCCTGTGGAACGCCGACGACTGGGCCACGCAGGGCGGGCGCGTCAAGACGGACTGGTCGCAGGCGCCGTTCGTCGCGCGGTACCGCAACTTCACCGCCACGGAAGCCGCGTCGTCGTCGTCGCCGGCAGGGTACGACCAGCAGATGGACGCCACGGCGCAGCAGGCGATGAAGTGGGCGCGCGACAACTACATGGTGTACGACTACTGCGCCGACAGCAAGCGGTTCCCGCAGGGCTTCCCGCCCGAGTGCTCCATGCCGTAGAGTGGAGTGGAGACGCGCCAAAGCCTCGGTGCACTTTGATGAACGCGGACTCGATCGAACTCACGCAGGGCACGCATTGACCTCGTTTTTTTATTTTTACTTCTCTTGATTGAATTGATTCATTCTTTCTATGTAAAGTAG ATATATATATATATGTATATGTATGCACGAAAGATTTAAAGAATGGAGTGTGAAAGAAAAAATATGTTTGCATTGCAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10055#0 -------------CTCATCATCTATATCACGATCGATCACAAAGAGGTTAACAGTAACAC 47 consensus_10055#1 TTCACTTTCTCTTCTCATCATCTATATCACGATCGATCACAAAGAGGTTAACAGTAACAC 60 *********************************************** consensus_10055#0 ATGGGGTTCGGCTCGAGGGAGATGGCCTGCGCGCTCGTGGCGCTGGTGCTCGGGCTCTGC 107 consensus_10055#1 ATGGGGTTCGGCTCGAGGGAGATGGCCTGCGCGCTCGTGGCGCTGGTGCTCGGGCTCTGC 120 ************************************************************ consensus_10055#0 TGCGTCGGCGGCGCACGGGCGACNGGGAGGATCGACGAGGGGCTGGAGGTGATGTGGGGC 167 consensus_10055#1 TGCGTCGGCGGCGCACGGGCGACGGGGAGGATCGACGAGGGGCTGGAGGTGATGTGGGGC 180 *********************** ************************************ consensus_10055#0 GACGGCCGGGGGAGCGTCTCGCCGGACGGGCAGGTGATGGCGCTGTCGCTCGACCACACC 227 consensus_10055#1 GACGGCCGGGGGAGCGTCTCGCCGGACGGGCAGGTGATGGCGCTGTCGCTCGACCACACC 240 ************************************************************ consensus_10055#0 TCCGGCTCCGGGTGGAGGTCCAAGAACACGTACCTGTTCGCGCGCNTCGACCTGCAGATC 287 consensus_10055#1 TCCGGCTCCGGGTGGAGGTCCAAGAACACGTACCTGTTCGCGCGCGTCGACCTGCAGATC 300 ********************************************* ************** consensus_10055#0 AAGCTCGTCGCCAACAACTCCGCCGGCACGGTCACCACCTGCTACTTCATGTCGGAAGGG 347 consensus_10055#1 AAGCTCGTCGCCAACAACTCCGCCGGCACGGTCACCACCTGCTACTTCATGTCGGAAGGG 360 ************************************************************ consensus_10055#0 GAGTTGGATATCCACGATGAGGTGGACCTGGAGTTCCTCGGCAACGTCACCGGGCAGCCG 407 consensus_10055#1 GAGTGGGATATCCACGATGAGGTGGACCTGGAGTTCCTCGGCAACGTCACCGGGCAGCCG 420 **** ******************************************************* consensus_10055#0 TACACGCTGCACACCAACGTCTTCGCCAATGGCACCGGCGGCAAAGAGCAGCAGTTCCAC 467 consensus_10055#1 TACACGCTGCACACCAACGTCTTCGCCAATGGCACCGGGGGCAAAGAGCAGCAGTTCCAC 480 ************************************** ********************* consensus_10055#0 CTCTGGTTCGACCCCACCACCGACTTCCACACCTACTCCATCGTCTGGACCTCGCAGCAC 527 consensus_10055#1 CTCTGGTTCGACCCCACCACCGACTTCCACACCTACTCCATCGTCTGGACCTCGCAGCAC 540 ************************************************************ consensus_10055#0 ATCCTTGTGCTGGTGGACGGGACGCCGATCCGGGAGATGAAGAACCACGCGGACAAGGGG 587 consensus_10055#1 ATCCTTGTGCTGGTGGACGGGACGCCGATCCGGGAGATGAAGAACCACGCGGACAAGGGG 600 ************************************************************ consensus_10055#0 ATCGCCTACCCGTCGTCNCAGCGGATGCGGCTGTACGGGAGCCTGTGGAACGCCGACGAC 647 consensus_10055#1 ATCGCCTACCCGTCGTCGCAGCGGATGCGGCTGTACGGGAGCCTGTGGAACGCCGACGAC 660 ***************** ****************************************** consensus_10055#0 TGGGCCACGCAGGGCGGGCGCGTCAAGACGGACTGGTCGCAGGCGCCGTTCGTCGCGCGG 707 consensus_10055#1 TGGGCCACGCAGGGCGGGCGCGTCAAGACGGACTGGTCGCAGGCGCCGTTCGTCGCGCGG 720 ************************************************************ consensus_10055#0 TACCGCAACTTCACCGCCACGGAAGCCGCGTCGTCGTCGTCGCCGGCAGGGTACGACCAG 767 consensus_10055#1 TACCGCAACTTCACCGCCACGGAAGCCGCGTCGTCGTCGTCGCCGGCAGGGTACGACCAG 780 ************************************************************ consensus_10055#0 CAGATGGACGCCACGGCGCAGCAGGCGATGAAGTGGGCGCGCGACAAATACATGGTGTAC 827 consensus_10055#1 CAGATGGACGCCACGGCGCAGCAGGCGATGAAGTGGGCGCGCGACAACTACATGGTGTAC 840 *********************************************** ************ consensus_10055#0 GACTATTGCGCCGACAGCAAGCGGTTCCCGCAGGGNTTCCCGCCCGAGTGTTCCATGCCG 887 consensus_10055#1 GACTACTGCGCCGACAGCAAGCGGTTCCCGCAGGGCTTCCCGCCCGAGTGCTCCATGCCG 900 ***** ***************************** ************** ********* consensus_10055#0 TAGAGTGGAGTGGAGACGCGCCAAAGCCTCGGTGCACTTTGATGAACGCGGACTCGATCG 947 consensus_10055#1 TAGAGTGGAGTGGAGACGCGCCAAAGCCTCGGTGCACTTTGATGAACGCGGACTCGATCG 960 ************************************************************ consensus_10055#0 AACTCACGCAGGGCACGCATTGACCTCGTTTTTTTATTTTTACTTCTCTTGATTGAATTG 1007 consensus_10055#1 AACTCACGCAGGGCACGCATTGACCTCGTTTTTTTATTTTTACTTCTCTTGATTGAATTG 1020 ************************************************************ consensus_10055#0 ATTCATTCTTTCTATGTAAAGTAGATATATATATATATATATATATATATATATATATAT 1067 consensus_10055#1 ATTCATTCTTTCTATGTAAAGTAGATATATATATATATATAT------------------ 1062 ****************************************** consensus_10055#0 ATATATATGTATATGTATGCACGAAAGATTTAAAGAATGGAGTGTGAAAGAAAAAATATG 1127 consensus_10055#1 --------GTATATGTATGCACGAAAGATTTAAAGAATGGAGTGTGAAAGAAAAAATATG 1114 **************************************************** consensus_10055#0 TTTGCATTGCAAAAAAAAAAA 1148 consensus_10055#1 TTTGCATTGCAAAAAAAAA-- 1133 ******************* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||