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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10060#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1402 fasta sequence
[GGAAACAAATCCAAAACCCGCTTCGTGCGCCACACCCGCTAAGGCCGCCGCCGCTTCTTCCGAAATGGCCGCCGCCGCCGAGTCCCCCTCCTCTTCCCCGCCGCCGCCGCCGATGTCGCCGGCACCGCAGGCCGCTTCGCCGGCGGAGGATCGGCGGGGCGGGAGGGCACCGGTCCCCCCCTACGTGAAGGCGGCGGCGGGGTCGGTCGGCGGCGTGATGGAGGCGTGCTGCCTGCAGCCGATCGACGTCATCAAGACGCGGCTGCAGCTAGACCGCTCGGGGGCGTACCGGGGCATCGCGCACTGCGGCACCACCGTCGTGCGCTCCGAGGGCGTGCGCGCGCTCTGGAAGGGGCTCACGCCCTTCGCCACCCACCTNACGCTCAAGTACGCGCTCCGCCTNGGCTCCAACGCCGTGCTGCAGTCCGCGTTCAAGGACCCCGGCACGGGCAAGGTCTCCGCGCACGGCCGCCTCGCCTCCGGGTTCGGCGCCGGCGTCCTCGAGGCCCTCCTCATCGTCACCCCCTTCGAGGTGGTTAAAATCAGGTTGCAGCAACAAAAAGGTCTAAGCCCTGACCTGCTGAGATATAAGGGGCCAATACATTGTGCTAGGACGATTGTTACTGAGGAGGGTCTTTTTGGCCTGTGGGCTGGAGCATTACCAACCGTCATGCGTAATGGCACAAACCAAGCCGCAATGTTCACTGCCAAGAATACATTTGATATTGTTCTCTGGAAGAAGCATGAAGGAGATGGGAAGGTTCTCCAGCCATGGCAGTCAATGATTTCAGGTTTTCTTGCAGGAACTGCAGGTCCGATCTGCACTGGACCCTTCGATGTCGTGAAGACTAGACTGATGGCCCAGGGGA-GAACTGGTGACATCAAGTACAAGGGTATGGTCCACGCGATACGCACAATATACACTGAAGAGGGTCTCAGAGCCCTTTGGAAAGGTTTGCTTCCGAGGCTTATGAGGATTCCACCTGGTCAGGCTATAATGTGGGCGGTGGCTGATCAGGTGATGGGCCTCTATGAGAGATCATATCTGCAGCCGGCTCATATGTAATCCCCGTACTTAAGTGATGAACTCAAATTTGTTCAGTTCATCACTTTGGATCGGTGGTAGAGGGACAAGGC-GTCAAAAACTC-AAAATCGTTGATC-GGAAAAGTATCTGTTCAATTACCTAGACATTAGATTGTTCATAGCCAAGAGTTGAGTACTGGCCGGAGCAATGAACTGATGTATTCTAAGCAATCAATAATGGTGAAAC-GCCCTATTGGATTTTAAAAAAAGTGTGCTGATGACCGCAATGTATGTAATGGAGTAGTAAATTGCAATAGCGTAGACCTGCCTGTTTTGCTTCTGTGATCAACTGTTCTTTTAGATGCAGAATGCTCAACTG]
[+] EMBL AU166517 [GGAAACAAATCCAAAACCCGCTTCGTGCGCCACACCCGCTAAGGCCGCCGCCGCTTCTTCCGAAATGGCCGCCGCCGCCGAGTCCCCCTCCTCTTCCCCGCCGCCGCCGCCGATGTCGCCGGCACCGCAGGCCGCTTCGCCGGCGGAGGATCGGCGGGGCGGGAGGGCACCGGTCCCCCCCTACGTGAAGGCGGCGGCGGGGTCGGTCGGCGGCGTGATGGAGGCGTGCTGCCTGCAGCCGATCGACGTCATCAAGACGCGGCTGCAGCTAGACCGCTCGGGGGCGTACCGGGGCATCGCGCACTGCGGCACCACCGTCGTGCGCTCCGAGGGCGTGCGCGCGCTCTGGAAGGGGCTCACGCCCTTCGCCACCCACCTNACGCTCAAGTACGCGCTCCGCCTNGGCTCCAACGCCGTGCTGCAGTCCGCGTTCAA ]
[+] EMBL AK069872 [ CGCCGCCGCCGCCGATGTCGCCGGCACCGCAGGCCGCTTCGCCGGCGGAGGATCGGCGGGGCGGGAGGGCACCGGTCCCCCCCTACGTGAAGGCGGCGGCGGGGTCGGTCGGCGGCGTGATGGAGGCGTGCTGCCTGCAGCCGATCGACGTCATCAAGACGCGGCTGCAGCTAGACCGCTCGGGGGCGTACCGGGGCATCGCGCACTGCGGCACCACCGTCGTGCGCTCCGAGGGCGTGCGCGCGCTCTGGAAGGGGCTCACGCCCTTCGCCACCCACCTCACGCTCAAGTACGCGCTCCGCCTCGGCTCCAACGCCGTGCTGCAGTCCGCGTTCAAGGACCCCGGCACGGGCAAGGTCTCCGCGCACGGCCGCCTCGCCTCCGGGTTCGGCGCCGGCGTCCTCGAGGCCCTCCTCATCGTCACCCCCTTCGAGGTGGTTAAAATCAGGTTGCAGCAACAAAAAGGTCTAAGCCCTGACCTGCTGAGATATAAGGGGCCAATACATTGTGCTAGGACGATTGTTACTGAGGAGGGTCTTTTTGGCCTGTGGGCTGGAGCATTACCAACCGTCATGCGTAATGGCACAAACCAAGCCGCAATGTTCACTGCCAAGAATACATTTGATATTGTTCTCTGGAAGAAGCATGAAGGAGATGGGAAGGTTCTCCAGCCATGGCAGTCAATGATTTCAGGTTTTCTTGCAGGAACTGCAGGTCCGATCTGCACTGGACCCTTCGATGTCGTGAAGACTAGACTGATGGCCCAGGGGA GAACTGGTGACATCAAGTACAAGGGTATGGTCCACGCGATACGCACAATATACACTGAAGAGGGTCTCAGAGCCCTTTGGAAAGGTTTGCTTCCGAGGCTTATGAGGATTCCACCTGGTCAGGCTATAATGTGGGCGGTGGCTGATCAGGTGATGGGCCTCTATGAGAGATCATATCTGCAGCCGGCTCATATGTAATCCCCGTACTTAAGTGATGAACTCAAATTTGTTCAGTTCATCACTTTGGATCGGTGGTAGAGGGACAAGGC GTCAAAAACTC AAAATCGTTGATC GGAAAAGTATCTGTTCAATTACCTAGACATTAGATTGTTCATAGCCAAGAGTTGAGTACTGGCCGGAGCAATGAACTGATGTATTCTAAGCAATCAATAATGGTGAAAC GCCCTATTGGATTTTGATACAAGTGTGCTGATGACCGCAATGTATGTAATGGAGTAGTAAATTGCAATAGCGTAGACCTGCCTGTTTTGCTTCTGTGATCAACTGTTCTTTTAGATGCAGAATGCTCAACTG]
[+] EMBL AU166516 [ CCCTTNGATGTCGTGAAAACTAGACTGATGGCCCAGGGGAGGAACTGGTNACATCAAGTACAAGGGTATGGTCCACGCGATACGCCCAATAANCACTGAAGAGGGTCTCAGAGCCCTTTGGAAAGGTTTGCTTCCGAGGCTTATGAGGATTCCACCTGGTCAGGCTATAATGTGGGCGGTGGCTGATCAGGTGATGGGCCTCTATGAGAGATCATATCTGCAGCCGGCTCATATGTAATCCCCGTACTTAAGTGATGAACTCAAATTTGTTCAGTTCATCACTTTGGATCGGTGGTAGAGGGACAAGGCGGTCAAAAACTCNNAAATCGTTGATCGGGNAAAGTATCTGTTCAATTACCTAGACATTAGATTGTTCATAGCCAAGAGTTGAGTACTGGCCGGAACAATGAACTGATGTATTCTAAGCAATCAATAATGGTGNAACNGCCCTATTGGATTTAAAAAA ]
[+] EMBL AU166518 [ TGATGGCCCAGGGGA GAACTGGTGACATCAAGTACAAGGGTATGGTCCACGCGATACGCACAATATACACTGAAGAGGGTCTCAGAGCCCTTTGGAAAGGTTTGCTTCCGAGGCTTATGAGGATTCCACCTGGTCAGGCTATAATGTGGGCGGTGGCTGATCAGGTGATGGGCCTCTATGAGAGATCATATCTGCAGCCGGCTCATATGTAATCCCCGTACTTAAGTGATGAACTCAAATTTGTTCAGTTCATCACTTTGGATCGGTGGTAGAGGGACAAGGC GTCAAAAACTC AAAATCGTTGATC GGAAAAGTATCTGTTCAATTACCTAGACATTAGATTGTTCATAGCCAAGAGTTGAGTACTGGCCGGAGCAATGAACTGATGTATTCTAAGCAATCAATAATGGTGAAACTGCCCTATTGGATTTTAAAAAA ]
[+] EMBL CB682865 [ GCTTCCTAGGCTTATGAGGATTCCACCTGGTCAGGCTATAATGTGGGCGGTGGCTGATCAGGTGATGGGCCTCTATGAGAGATCATATCTGCAGCCGGCTCATATGTAATCCCCGTACTTAAGTGATGAACTCAAATTTGTTCAGTTCATCACTTTGGATCGGTGGTAGAGGGACAAGGC GTCAAAAACTC AAAATCGTTGATC GGAAAAGTATCTGTTCAATTACCTAGACATTAGATTGTTCATAGCCAAGAGTTGAGTACTGGCCGGAGCAATGAACTGATGTATTCTAAGCAATCAATAATGGTGAAAC GCCCT ]
[+] EMBL CB685193 [ aTGCAGTTGGGTCATATGTAATCCCCGTACTTAAGTGATGAACTCAAATTTGTTCAGTTCATCACTTTGGATCGGTGGTAGAGGGACAAGGC GTCAAAAACTC AAAATCGTTGATC GGAAAAGTATCTGTTCAATTACCTAGACATTAGATTGTTCATAGCCAAGAGTTGAGTACTGGCCGGAGCAATGAACTGATGTATTCTAATCAATCAATAATGGTGAAAC GCCCT ]
consensusID : consensus_10060#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 455 fasta sequence
[TCAAGTACGCGCTCCGCCTCGGCTCCAACGCCGTGCTGCAGTCCGCGTTCAAGGACCCCGGCACGGGCAAGGTCTCCGCGCACGGCCGCCTCGCCTCCGGGTTCGGCGCCGGCGTCCTCGAGGCCCTCCTCATCGTCACCCCCTTCGAGGCAAGATCACCCCTGCATCTGTTCCTTTTTTACTTACCTGGAGTATCTGCGAGATCTTGAATCGTTCTTGAATTCTTGGTTTCTCTGCGACTGCGACATAGTTTATAGAATTTGAATAAAAATGTGTTCACTGCTCCAGCGCGAATAAATTATATTTACAAAGGAACATCTCTAGGTGCTTCTTGCCGGAATAAGAACTCGCGAGAGCTGCCATATAGGACACCGATGTAAAAGTACAAATTCACTACTTTAGATATAGAAAAGGAACGGAGGAACATGGGTGGACCAGTTATTTAATCTTGTCTG]
[+] EMBL CF303274 [TCAAGTACGCGCTCCGCCTCGGCTCCAACGCCGTGCTGCAGTCCGCGTTCAAGGACCCCGGCACGGGCAAGGTCTCCGCGCACGGCCGCCTCGCCTCCGGGTTCGGCGCCGGCGTCCTCGAGGCCCTCCTCATCGTCACCCCCTTCGAGGCAAGATCACCCCTGCATCTGTTCCTTTTTTACTTACCTGGAGTATCTGCGAGATCTTGAATCGTTCTTGAATTCTTGGTTTCTCTGCGACTGCGACATAGTTTATAGAATTTGAATAAAAATGTGTTCACTGCTCCAGCGCGAATAAATTATATTTACAAAGGAACATCTCTAGGTGCTTCTTGCCGGAATAAGAACTCGCGAGAGCTGCCATATAGGACACCGATGTAAAAGTACAAATTCACTACTTTAGATATAGAAAAGGAACGGAGGAACATGGGTGGACCAGTTATTTAATCTTGTCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10060#0 GGAAACAAATCCAAAACCCGCTTCGTGCGCCACACCCGCTAAGGCCGCCGCCGCTTCTTC 60
consensus_10060#1 ------------------------------------------------------------
consensus_10060#0 CGAAATGGCCGCCGCCGCCGAGTCCCCCTCCTCTTCCCCGCCGCCGCCGCCGATGTCGCC 120
consensus_10060#1 ------------------------------------------------------------
consensus_10060#0 GGCACCGCAGGCCGCTTCGCCGGCGGAGGATCGGCGGGGCGGGAGGGCACCGGTCCCCCC 180
consensus_10060#1 ------------------------------------------------------------
consensus_10060#0 CTACGTGAAGGCGGCGGCGGGGTCGGTCGGCGGCGTGATGGAGGCGTGCTGCCTGCAGCC 240
consensus_10060#1 ------------------------------------------------------------
consensus_10060#0 GATCGACGTCATCAAGACGCGGCTGCAGCTAGACCGCTCGGGGGCGTACCGGGGCATCGC 300
consensus_10060#1 ------------------------------------------------------------
consensus_10060#0 GCACTGCGGCACCACCGTCGTGCGCTCCGAGGGCGTGCGCGCGCTCTGGAAGGGGCTCAC 360
consensus_10060#1 ------------------------------------------------------------
consensus_10060#0 GCCCTTCGCCACCCACCTNACGCTCAAGTACGCGCTCCGCCTNGGCTCCAACGCCGTGCT 420
consensus_10060#1 -----------------------TCAAGTACGCGCTCCGCCTCGGCTCCAACGCCGTGCT 37
******************* *****************
consensus_10060#0 GCAGTCCGCGTTCAAGGACCCCGGCACGGGCAAGGTCTCCGCGCACGGCCGCCTCGCCTC 480
consensus_10060#1 GCAGTCCGCGTTCAAGGACCCCGGCACGGGCAAGGTCTCCGCGCACGGCCGCCTCGCCTC 97
************************************************************
consensus_10060#0 CGGGTTCGGCGCCGGCGTCCTCGAGGCCCTCCTCATCGTCACCCCCTTCGAGGTGGTTAA 540
consensus_10060#1 CGGGTTCGGCGCCGGCGTCCTCGAGGCCCTCCTCATCGTCACCCCCTTCGAGGC----AA 153
***************************************************** **
consensus_10060#0 AATCAGGTTGCAGCAACAAAAAGGTCTAAGCCCTGACCTGCTGAGATATAAGGGGCCAAT 600
consensus_10060#1 GATCA--CCCCTGCATCTGTTCCTTTT--TTACTTACCTGG-AGTATCTGCGAGATCT-T 207
**** * *** * * * ** ***** ** * * * * *
consensus_10060#0 ACATTGTGCTAGGACGATTG-TTACTGAGGAGGGTCTTTTTGGCCTGTGGGCTGGAGCAT 659
consensus_10060#1 GAATCGTTCTTGAATTCTTGGTTTCTCTGCGACTGCGACATAGTTTATAGAATTT-GAAT 266
** ** ** * * *** ** ** * * * * * * * * * **
consensus_10060#0 TACCAACCGTCATGCGTAATGGCACAAACCAAGCCGCAATGTTCACTGCCAAGAATACAT 719
consensus_10060#1 AAAAATGTGTTCACTGCTCCAGCGCGAATAAA----TTATATTTACAA--AGGAACATCT 320
* * ** * ** * ** ** ** ** ** * *** * *
consensus_10060#0 TT-GATATTGTTCTCTGGAAGAAGCATGAAGGAGA-TGGGAAGGTTCTCCAGCCATGGCA 777
consensus_10060#1 CTAGGTGCTTCTTGCCGGAATAAGAACTCGCGAGAGCTGCCATATAGGACACCGATGTAA 380
* * * * * * **** *** * **** * * * ** * *** *
consensus_10060#0 GTCAATGATTTCA--GGTTTTCTTGCAGGAACTGCAGGTCCGATCTGCACTGGACCCTTC 835
consensus_10060#1 AAGTACAAATTCACTACTTTAGATATAGAAAAGGAACGGAGGAACATGGGTGGACCA--- 437
* * **** *** * ** ** * * * ** * ******
consensus_10060#0 GATGTCGTGAAGACTAGACTGATGGCCCAGGGGAGAACTGGTGACATCAAGTACAAGGGT 895
consensus_10060#1 ---GTTATTTAATCTTGTCTG--------------------------------------- 455
** * * ** * ***
consensus_10060#0 ATGGTCCACGCGATACGCACAATATACACTGAAGAGGGTCTCAGAGCCCTTTGGAAAGGT 955
consensus_10060#1 ------------------------------------------------------------
consensus_10060#0 TTGCTTCCGAGGCTTATGAGGATTCCACCTGGTCAGGCTATAATGTGGGCGGTGGCTGAT 1015
consensus_10060#1 ------------------------------------------------------------
consensus_10060#0 CAGGTGATGGGCCTCTATGAGAGATCATATCTGCAGCCGGCTCATATGTAATCCCCGTAC 1075
consensus_10060#1 ------------------------------------------------------------
consensus_10060#0 TTAAGTGATGAACTCAAATTTGTTCAGTTCATCACTTTGGATCGGTGGTAGAGGGACAAG 1135
consensus_10060#1 ------------------------------------------------------------
consensus_10060#0 GCGTCAAAAACTCAAAATCGTTGATCGGAAAAGTATCTGTTCAATTACCTAGACATTAGA 1195
consensus_10060#1 ------------------------------------------------------------
consensus_10060#0 TTGTTCATAGCCAAGAGTTGAGTACTGGCCGGAGCAATGAACTGATGTATTCTAAGCAAT 1255
consensus_10060#1 ------------------------------------------------------------
consensus_10060#0 CAATAATGGTGAAACGCCCTATTGGATTTTAAAAAAAGTGTGCTGATGACCGCAATGTAT 1315
consensus_10060#1 ------------------------------------------------------------
consensus_10060#0 GTAATGGAGTAGTAAATTGCAATAGCGTAGACCTGCCTGTTTTGCTTCTGTGATCAACTG 1375
consensus_10060#1 ------------------------------------------------------------
consensus_10060#0 TTCTTTTAGATGCAGAATGCTCAACTG 1402
consensus_10060#1 ---------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||