cluster # 10061

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Oryza sativa
cluster # 10061 cluster # 10061 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10061#0 length = 556 sequences # 6

consensus_10061#1 length = 429 sequences # 1

consensusID : consensus_10061#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 556
fasta sequence

                              [GGAGGCGAGGCTGTGCGGTGGTCGCCGACGACGACGAGGAGGAGGAGGATATCGATCGCCGGCGATGGGGTACTGGTGGGACCGCGTCGTGCTTCCGGTGAGGAGGGCGTGGCTCGGCGTCGCCGCCCGATTCGGGGTTCGG-CAGACAGGGCTGTGGAGGCTGAGGCAGGAGGTGAGCACGTGCGAGTACGAGGACGTGCGCGTGATGTGGGAGATGCTGAGCCGCACCAGCACGGCGGGGGCGGGGGCGGGGCGGGCGGCGCCGCCGGC-GAGGAGGCACAGCCGGTTCCGGCAGCCGCGGCCGTGGACCGAGAGCATCTGCCTCTGCGCGGGCTTCTAGAAGGTCTCCCTTGTGGGCTTGTGGCTGTGGCTTAGCTCGTCCTCTTCTCTTCGCGACTTCTCTTTGATTTTTTTT---TTCTTCCTTTTTTTTTCTTTTCTCCGTCTCACTACTGGGCTCTGAGATGTAGTAATCGATTCCTCCTCTTGTATCGATCCGCCTAGATGATACTTGGGGTATGT-GAATGAACAGAGCTGTTTCAGATTATTAAAAAAAAAA]

[+] EMBL AK066494             [GGAGGCGAGGCTGTGCGGTGGTCGCCGACGACGACGGGGAGGAGGAGGATATCGATCGCCGGCGATGGGGTACTGGTGGGACCGCGTCGTGCTTCCGGTGAGGAGGGCGTGGCTCGGCGTCGCCGCCCGATTCGGGGTTCGG CAGACAGGGCTGTGGAGGCTGAGGCAGGAGGTGAGCACGTGCGAGTACGAGGACGTGCGCGTGATGTGGGAGATGCTGAGCCGCACCAGCACGGCGGGGGCGGGGGCGGGGCGGGCGGCGCCGCCGGC GAGGAGGCACAGCCGGTTCCGGCAGCCGCGGCCGTGGACCGAGAGCATCTGCCTCTGCGCGGGCTTCTAGAAGGTCTCCCTTGTGGGCTTGTGGCTGTGGCTTAGCTCGTCCTCTTCTCTTCGCGACTTCTCTTTGATTTTTTTT   TTCTTCCTTTTTTTTTCTTTTCTCCGTCTCACTACTGGGCTCTGAGATGTAGTAATCGATTCCTCCTCTTGTATCGATCCGCCTAGATGATACTTGGGGTATGT GAATGAACAGAGCT                       ]
[+] EMBL OSC4931              [              GCGGTGGTCGCCGACGACGACGAGGAGGAGGAGGATATCGATCGCCGGCNATGGGGTACTGGTGGGACCGCGTCGTGCTTCCGGTGAGGAGGGCGTGGCTCGGCGTCGCCGCCCGATTCGGGGTTCGG NAGACAGGGCTGTGGAGGCTGAGGCAGGAGGTGAGCACGTNCNANTACGAGGACGTGCGCTTAATGTGGGAGATGCTGAGNCGCACCAGCACGGCGGGGGCGGNGGCGGGGCGGGCGGNGCC CCGGCAAAGGAGGCACAGCCGGTTNCGGCAACCGCGGCCGTG                                                                                                                                                                                                                                                              ]
[+] EMBL AU076239             [                 GTGGTCGCCGACGACGACGAGGAGGAGGAGGATATCGATCGCCGGCGATGGGGTACTGGTGGGACCGCGTCGTGCTTCCGGTGAGGAGGGCGTGGCTCGGCGTCGCCGCCCGATTCGGGGTTCGG CAGACAGGGCTGTGGAGGCTGAGGCAGGAGGTGAGCACGTGCGAGTACGAGGACGTGCGCGTGATGTGGGAGATGCTGAGCCGCACCAGCACGGCGGGGGCNGGGGCGGGGCGGGCGGCGCCGCCGGC GAGGAGGCACANCCGGTTC                                                                                                                                                                                                                                                                               ]
[+] EMBL BI798300             [                                                      ATCGCC GCGATGGGGTACTGGTGGGACCGCGTCGTGCTTCCGGTGAGGAGGGCGTGGCTCGGCGTCGCCGCCCGATTCGGGGTTCGGCCAGACAGGCCTGTGGAGGCTGAGGCAGGAGGTGAGCACGTGCGAGTACGAGGACGTGCGCGTGATGTGGGAGAT CTGA CCGCACCAGCAC GC GGGGCGGGGGCGGGAC GGCGGCGCCGCCGGC GAGGAGGCACAGCCGGTTCCGGCAGCCGCGGCCATGGACCGAGAGCATCTGCCTCTGCGCGGGCTTCTAGAAGGTCTCCCTTGTGGGCTTGTGGCTGTGGCTTAGCTCGTCCTCTTCTCTTCGCGACTTCTCTTTGA TTTTTTT   TTCTTCCTTTTTTTTTCTTTTCTCCGTCTCACTACTGGGCTCTGAGATGTAGTAATCGATTCCTCCTCTTGTATCGATCCGCCTAGATGATACTTGGGGTATGTCGAATGAACAGAGCTGTTTCATATTATTAAAAAA    ]
[+] EMBL AU174426             [                                                                                                              GGCTCGGCGTCNCCGCCCGATTCGGGGTTCGG CAGACAGGGCTGTGGAGGCTNAGGCAGGAGGTGAGCACGTGCGAGTACGAGGACGTGCGCGTGATGTGGGAGATGCTGAGCCGCACCAGCACGGCGGGGGCGGGGGCGGGGCGGGCGGCNCCGCCGGC GAGGAGGCACAGCCGGTTCCGGCANCCGCGGCCGTGGACCGAGAGCATCTGCCTCTGCGCGGGCTTNTAGAAGGTCTCCCTTGTGGGCTTGTGGCTGTGGCTTAGCTCGTCCTCTTCTCTTCGCGACTTCTCTTTGATTTTTTTT   TTCTTCCTTTTTTTTTCTTTTCTCCGTCTCACTACTGGGCTCTGAGATGTAGTAATCGATTCCTCCTCTTGTATCGATCCGCCTAGATGATACTTGGGGTATGT GAATGAACAGAGCTGTTTCAGATTATTAAAAAAA   ]
[+] EMBL AU071269             [                                                                                                                                                                                                                                                                  CGGCGCCNCCGGC GAGGNGGCACAGCCGGTTCCGGCAGCCGCGGCCGTGGACCGAGAGCATCTGCCTCTGCGCGGGCTTCTAGAAGGTCTCCCTTGTGGGCTTGTGGCTGTGGCTTAGCTCGTCCTCTTCTCTTCGCGACTTCTCTTTGATTTTTTTTTTCTTCTTCCTTTTTTTTTCTTTTCTCCGTCTCACTACTGGGCTCTGAGATGTNGTAATCGATTCCTCCTCTTGTATCGATCCGCCTAGATGATACTTGGGGTATGT GAATGAACAGAGCTGTTTCNGATTAAAAAAAAAAAAA]




>consensus_10061#0
GGAGGCGAGGCTGTGCGGTGGTCGCCGACGACGACGAGGAGGAGGAGGATATCGATCGCC
GGCGATGGGGTACTGGTGGGACCGCGTCGTGCTTCCGGTGAGGAGGGCGTGGCTCGGCGT
CGCCGCCCGATTCGGGGTTCGGCAGACAGGGCTGTGGAGGCTGAGGCAGGAGGTGAGCAC
GTGCGAGTACGAGGACGTGCGCGTGATGTGGGAGATGCTGAGCCGCACCAGCACGGCGGG
GGCGGGGGCGGGGCGGGCGGCGCCGCCGGCGAGGAGGCACAGCCGGTTCCGGCAGCCGCG
GCCGTGGACCGAGAGCATCTGCCTCTGCGCGGGCTTCTAGAAGGTCTCCCTTGTGGGCTT
GTGGCTGTGGCTTAGCTCGTCCTCTTCTCTTCGCGACTTCTCTTTGATTTTTTTTTTCTT
CCTTTTTTTTTCTTTTCTCCGTCTCACTACTGGGCTCTGAGATGTAGTAATCGATTCCTC
CTCTTGTATCGATCCGCCTAGATGATACTTGGGGTATGTGAATGAACAGAGCTGTTTCAG
ATTATTAAAAAAAAAA

consensusID : consensus_10061#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 429
fasta sequence

                              [GGGGCTAACTCCGGCGATGTTTTTTTGGGTTTGTTTGGTCGCAGGGCTGTGGAGGCTGAGGCAGGAGGTGAGCACGTGCGAGTACGAGGACGTGCGCGTGATGTGGGAGATGCTGAGCCGCACCAGCACGGCGGGGGCGGGGGCGGGGCGGGCGGCGCCGCCGGCGAGGAGGCACAGCCGGTTCCGGCAGCCGCGGCCGTGGACCGAGAGCATCTGCCTCTGCGCGGGCTTCTAGAAGGTCTCCCTTGTGGGCTTGTGGCTGTGGCTTAGCTCGTCCTCTTCTCTTCGCGACTTCTCTTTGATTTTTTTTTTTCTTCCTTTTTTTTTCTTTTCTCCGTCTCACTACTGGGCTCTGAGATGTAGTAATCGATTCCTCCTCTTGTATCGATCCGCCTAGATGATACTTGGGGTATGTGAATGAACAGAGCT]

[+] EMBL AK107011             [GGGGCTAACTCCGGCGATGTTTTTTTGGGTTTGTTTGGTCGCAGGGCTGTGGAGGCTGAGGCAGGAGGTGAGCACGTGCGAGTACGAGGACGTGCGCGTGATGTGGGAGATGCTGAGCCGCACCAGCACGGCGGGGGCGGGGGCGGGGCGGGCGGCGCCGCCGGCGAGGAGGCACAGCCGGTTCCGGCAGCCGCGGCCGTGGACCGAGAGCATCTGCCTCTGCGCGGGCTTCTAGAAGGTCTCCCTTGTGGGCTTGTGGCTGTGGCTTAGCTCGTCCTCTTCTCTTCGCGACTTCTCTTTGATTTTTTTTTTTCTTCCTTTTTTTTTCTTTTCTCCGTCTCACTACTGGGCTCTGAGATGTAGTAATCGATTCCTCCTCTTGTATCGATCCGCCTAGATGATACTTGGGGTATGTGAATGAACAGAGCT]




>consensus_10061#1
GGGGCTAACTCCGGCGATGTTTTTTTGGGTTTGTTTGGTCGCAGGGCTGTGGAGGCTGAG
GCAGGAGGTGAGCACGTGCGAGTACGAGGACGTGCGCGTGATGTGGGAGATGCTGAGCCG
CACCAGCACGGCGGGGGCGGGGGCGGGGCGGGCGGCGCCGCCGGCGAGGAGGCACAGCCG
GTTCCGGCAGCCGCGGCCGTGGACCGAGAGCATCTGCCTCTGCGCGGGCTTCTAGAAGGT
CTCCCTTGTGGGCTTGTGGCTGTGGCTTAGCTCGTCCTCTTCTCTTCGCGACTTCTCTTT
GATTTTTTTTTTTCTTCCTTTTTTTTTCTTTTCTCCGTCTCACTACTGGGCTCTGAGATG
TAGTAATCGATTCCTCCTCTTGTATCGATCCGCCTAGATGATACTTGGGGTATGTGAATG
AACAGAGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10061#0      GGAGGCGAGGCTGTGCGGTGGTCGCCGACGACGACGAGGAGGAGGAGGATATCGATCGCC 60
consensus_10061#1      ------------------------------------------------------------
                                                                                   

consensus_10061#0      GGCGATGGGGTACTGGTGGGACCGCGTCGTGCTTCCGGTGAGGAGGGCGTGGCTCGGCGT 120
consensus_10061#1      --------------------------------------------GGGGCTAACTC--CGG 14
                                                                   ***  *  ***  ** 

consensus_10061#0      CGCCGCCCGATTCGGG--GTTCGGCAGACAGGGCTGTGGAGGCTGAGGCAGGAGGTGAGC 178
consensus_10061#1      CGATGTTTTTTTGGGTTTGTTTGGTCG-CAGGGCTGTGGAGGCTGAGGCAGGAGGTGAGC 73
                       **  *     ** **   *** **  * ********************************

consensus_10061#0      ACGTGCGAGTACGAGGACGTGCGCGTGATGTGGGAGATGCTGAGCCGCACCAGCACGGCG 238
consensus_10061#1      ACGTGCGAGTACGAGGACGTGCGCGTGATGTGGGAGATGCTGAGCCGCACCAGCACGGCG 133
                       ************************************************************

consensus_10061#0      GGGGCGGGGGCGGGGCGGGCGGCGCCGCCGGCGAGGAGGCACAGCCGGTTCCGGCAGCCG 298
consensus_10061#1      GGGGCGGGGGCGGGGCGGGCGGCGCCGCCGGCGAGGAGGCACAGCCGGTTCCGGCAGCCG 193
                       ************************************************************

consensus_10061#0      CGGCCGTGGACCGAGAGCATCTGCCTCTGCGCGGGCTTCTAGAAGGTCTCCCTTGTGGGC 358
consensus_10061#1      CGGCCGTGGACCGAGAGCATCTGCCTCTGCGCGGGCTTCTAGAAGGTCTCCCTTGTGGGC 253
                       ************************************************************

consensus_10061#0      TTGTGGCTGTGGCTTAGCTCGTCCTCTTCTCTTCGCGACTTCTCTTTGATTTTTTTTTT- 417
consensus_10061#1      TTGTGGCTGTGGCTTAGCTCGTCCTCTTCTCTTCGCGACTTCTCTTTGATTTTTTTTTTT 313
                       *********************************************************** 

consensus_10061#0      CTTCCTTTTTTTTTCTTTTCTCCGTCTCACTACTGGGCTCTGAGATGTAGTAATCGATTC 477
consensus_10061#1      CTTCCTTTTTTTTTCTTTTCTCCGTCTCACTACTGGGCTCTGAGATGTAGTAATCGATTC 373
                       ************************************************************

consensus_10061#0      CTCCTCTTGTATCGATCCGCCTAGATGATACTTGGGGTATGTGAATGAACAGAGCTGTTT 537
consensus_10061#1      CTCCTCTTGTATCGATCCGCCTAGATGATACTTGGGGTATGTGAATGAACAGAGCT---- 429
                       ********************************************************    

consensus_10061#0      CAGATTATTAAAAAAAAAA 556
consensus_10061#1      -------------------