These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10076#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1145 fasta sequence [TTTTTTAGCGAACAAAAGCGATTTATTTACATACGTACAATCGTATATACAATCTATACTAATTTTTCAGGAGATATGCAAGCTACACTGACAAATTACATGTTTAAACCTAACGATTATTCTCTGAATCATTAGTTCGGTGTACACTTGCTAGCAGCTACTTCTTTCTATACTGCAATCTAGCC-TGTCCATGCAAGGAGATAGGACTGAAAACTAACGAAATCT-TGGGACATTTGCTCAAAGACCATGAGCACAGAGAACACCCCCATCCCT-ACTAAAACTGGCTTTGCACTAGTCAAGTCCACATTGCCACTGCCACCGGCGACAGATGATTCCGCTTCGACAGATCCAGCTCTCGAATCTGACATCCTGGAGGC-GATAGCCCAC-GCCATCAA-TGGAGGAAGAACGCCAT-ACAAGATGGTCATGCAGTAACCGCCTGCA-ATGTCAGTAGCAATGGAGAATGAATTCGGAACGGTAGCTGCAATTAGCACGGTTGGGGCAACCACAGCCCCTGCAGCGATGTAGCTGAGCCTGTTGTTGTCCACAGCCGTTTTCGCTCCACGATGCCTTAATGCTTCTTCTTCATGTCCTTGGGCTGAAGAAGAGACAAGATTGGTCATCTGCTCAATGAAGAACTGTGAAGCTCCCAGCAGTGTTCCGAT-CAGCGACGTCCCGACAGCAAGGAGTGAGAACGTCTCCACAACAGTATAACTCCATTCTGTATTAAGCATA-TCCAGGATGTCAAACCCATCAAGATCCGTGGAGATGCTGAGCGCGATGTCGTCCCACACGAGCAAGGACAGCAATGGCACGATGCTCCCGACGAGTATCGAGAGCCGAATCCTCACGAGGTCCCCTCCAAGGTACGCGCATATCACTGGTGCGATATCATGGAAGACCAGCGTGAAGATGATCACCGGAAGCGTTGCAGGGACCTGCTCCCAGTTGGTGTTAGCTGGCAGGGTCAGGCCGGCACCGAATGCTACTGCAGACACCTCGATCGTCAGCAGTAATCCTATCATGACGAAAGTGAGCAGCTGGTTCACTTTGTCGGTGACGCCCGTGCCACCGGCGGCGATGAGGAGCGCAAGGGCGGCGGTGAAGGCGCAGCCGGAGACGGGCTCGGGAACGCCGGCGACCACGCT] [-] EMBL BM421787 [TTTTTTAGCGAACAAAAGCGATTTATTTACATACGTACAATCGTATATACAATCTATACTAATTTTTCAGGAGATATGCAAGCTACACTGACAAATTACATGTTTAAACCTAACGATTATTCTCTGAATCATTAGTTCGGTGTACACTTGCTAGCAGCTACTTCTTTCTATACTGCAATCTAGCCGTGTCCATGCAAGGAGATAGGACTGAAAACTAACGAAATC TGGGACATTTGCTCAAAGACCATGAGCACAGAGAACACCCCCATCCCT ACTAAAACTGGCTTTGCACTAGTCAAGTCCACATTGCCACTGCCACCGGCGACAGATGATTCCGCTTCGACAGATCCAGCTCTCGAATCTGACATCCTGGAGGC GATAGCCCAC GCCATCAA TGGAGGAAGAACGCCAT ACAAGATGGTCATGCAGTAACCGCCTGCA ATGTCAGTAGCAATGGAGAATGAATTCGGAACGGTAGCTGCAATTAGCACGGTTGGGGCAA CACAG CCCTGCAGCGATGTAGCTGAGCCTGTTGTTGTCCACAGNCG TTTCGCTCCACGATGCCTTAATG ] [+] EMBL CB624264 [ CGAACAAAAGCGATTTATTTACATACGTACCCTCGTATATACAATCTATACTAATTTTTCAGGAGATATGCAAGCTACACTGACAAATTACATGTTTAAACCTAACGATTATTCTCTGAATCATTAGTTC GTGTACACTTGCTAGCAGCTACTTCTTTCTATACTGCAATCTAGCC TGTCCATGCAAGGAGATAGGACTGAAAACTAACGAAATCT TGGGACATTTGCTCAAAGACCATGAGCACAGAGAACACCCCCATCCCT ACTAAAACTGGCTTTGCACTAGTCAAGTCCACATTGCCACTGCCACCGGCGACAGATGATTCCGCTTCGACAGATCCAGCTCTCGAATCTGACATCCTGGAGGC GATAGCCCAC GCCATCAA TGGAGGAAGAACGCCAT ACAAGATGGTCATGCAGTAACCGCCTGCA ATGTCAGTAGCAATGGAGAATGAATTCGGAACGGTAGCTGCAATTAGCACGGTTGGGGCAACCACAGCCCCTGCAGCGATGTAGCTGAGCCTGTTGTTGTCCACAGCCGTTTTCGCTCCACGATGCCTTAATGCTTCTTCTTCATGTCCTTGGGCTGAAGAAGAGACAAGATTGGTCATCTGCTCAATGAAGAACTGTGAAGCTCCCAGCAGTGTTCCTAT CAGCGACGTCCCGACAGCAAGGAGTGAGAACGTCTCCACAACAGTATAACTCCATTCTGTATTAAGCATA TCCAGGATGTCAAACCCATCAAGATCCGTGGAGATGCTGAGCGCGATGTCGTCCCACACGAGCAAG ] [-] EMBL BI807495 [ ttttttttTTACATGTTTAAACCTAACGATTATTCTCTGAATCATTAGTTCTGTGTACACTTGCTAGCAGCTACTTCTTTCTATACTGGAATCTAGCC GGTCCATGCAAGGAGATAGGACTGAAAACTAACGAAATCTGTGGGACATTTGCTCAAAGACCATGAGCACAGAGAA AACCCCATCCCT ACTAAAACGGGCTTTGCACTAGTCAAGTCCACATTGGCACTGCCACCGG GACAGATGATTCCG TTCGA AGATCCAG TCTCGAATCTGACATCCTGGAGGCGGATAGCCCACAGCCATCAAGTGGAGGAAGAACGCCATAACAAGATGGTCATGCAGTAACCGCCTGCACTTGTCAGTAGCAATGGAGAATGAATTCGGAACGGTAGCTGCAATTAGCACGGTGGGGGC ACCACAGCCCCTGCAGCGATGTAGCTGAGCCTGT ] [-] EMBL AU057472 [ TGGGACATTTGCTCAAAGACCATGAGCACAGAGAACACCCCCATCCCTAACTAAAACTGGCTTTGCACTAGTCAAGTCCACATTGCCACTGCCACCGGCGACAGATGATTCCGCTTCGACAGATCCAGCTCTCGAATCTGACATCCTGGAGGC GATAGCCCAC GCCATCAA TGGAGGAAGAACGCCAT ACAAGATGGTCATGCAGTAACCGCCTGCA ATGTCAGTAGCAATGGAGAATGAATTCGGAACGGTAGCTGCAATTAGCACGGTTGGGGCAACCACAGCCCCTGCAGCGATGTAGCTGAGCCTGTTGTTGTCCACAGCCGTTTTCGCTCCACGATGCCTTAATGCTTCTTCTTCATGTCCTTGGGCTGAAGAAGAGACAAGATTGGTCATCTGCTCAATGAAGAACTGTGAAGCTCCCAGCAGTGTTCCGAT CAGCGACGTCCCGACAG ] [-] EMBL AU056599 [ CCACGATGCCTTAATGCTTCTTCTTCATGTCCTTGGGCTGAAGAAGAGACAAGATTGGTCATCTGCTCAATGAAGAACTGTGAAGCTCCCAGCAGTGTTCCGATCCAGCGACGTCCCGACAGCAAGGAGTGAGAACGTCTCCACAACAGTATAACTCCATTCTGTATTAAGCATATTCCAGGATGTCAAACCCATCAAGATCCGTGGAGATGCTGAGCGCGATGTCGTCCCACACGAGCAAGGACAGCAATGGCACGATGCTCCCGACGAGTATCGAGAGCCGAATCCTCACGAGGTCCCCTCCAAGGTACGCGCATATCACTGGTGCGATATCATGGAAGACCAGCGTGAAGATGATCACCGGAAGCGTTGCAGGGACCTGCTCCCAGTTGGTGTTAGCTGGCAGGGTCAGGCCGGCACCGAATGCTACTGCAGACACCTCGATCGTCAGCAGTAATCCTATCATGACGAAAGTGAGCAGCTGGTTCACTTTGTCGGTGACGCCCGTGCCACCGGCGGCGATGAGGAGCGCAAGGGCGGCGGTGAAGGCGCAGCCGGAGACGGGCTCGGGAACGCCGGCGACCACGCT] consensusID : consensus_10076#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [AGAGAAGCAGATTGCAGGTGAACCTGTACACAACGTGTTCTTGCTAGTGCAGTAGTGCTACAGCGGAGACGCTCACTCTGTATTAAGCATATCCAGGATGTCAAACCCATCAAGATCCGTGGAGATGCTGAGCGCGATGTCGTCCCACACGAGCAAGGACAGCAATGGCACGATGCTCCCGACGAGTATCGAGAGCCGAATCCTCACGAGGTCCCCTCCAAGCGTGAAGATGATCACCGGAAGCGTTGCAGGGACCTGCTCCCAGTTGGTGTTAGCTGGCAGGGTCAGGCCGGCACCGAATGCTACTGCAGACACCTCGATCGTCAGCAGTAATCCTGCATCAGTAGACAGATCCCGATGGTAGTTAGTACTTAGTACTAGTGCGCAAGACAGATCATGTTGATGACAGCAAGAACCTGAGGTGTATGGATGTAATATGGTTATCAGCTACAGTAGGTTTGCTCTTACTTCAGCACAGTGCATTGTGTTGCAAGTAGTATGGAGCTCCCAGTGGGGAGAGTGGGTGTTTGTTCGTCATTGTCTCTACACTTTCAGAAATGAGTTACTACTCCACTACATGCCATCTTTGAATTCCAGTTGGGCGAACCAGTGTTTGTTCATCTCTGTTTTCCCAATTTCAGAAACGAGTTACTGTTCCAAAAAAAAAAAAAAAAAA] [-] EMBL CA762382 [AGAGAAGCAGATTGCAGGTGAACCTGTACACAACGTGTTCTTGCTAGTGCAGTAGTGCTACAGCGGAGACGCTCACTCTGTATTAAGCATATCCAGGATGTCAAACCCATCAAGATCCGTGGAGATGCTGAGCGCGATGTCGTCCCACACGAGCAAGGACAGCAATGGCACGATGCTCCCGACGAGTATCGAGAGCCGAATCCTCACGAGGTCCCCTCCAAGCGTGAAGATGATCACCGGAAGCGTTGCAGGGACCTGCTCCCAGTTGGTGTTAGCTGGCAGGGTCAGGCCGGCACCGAATGCTACTGCAGACACCTCGATCGTCAGCAGTAATCCTGCATCAGTAGACAGATCCCGATGGTAGTTAGTACTTAGTACTAGTGCGCAAGACAGATCATGTTGATGACAGCAAGAACCTGAGGTGTATGGATGTAATATGGTTATCAGCTACAGTAGGTTTGCTCTTACTTCAGCACAGTGCATTGTGTTGCAAGTAGTATGGAGCTCCCAGTGGGGAGAGTGGGTGTTTGTTCGTCATTGTCTCTACACTTTCAGAAATGAGTTACTACTCCACTACATGCCATCTTTGAATTCCAGTTGGGCGAACCAGTGTTTGTTCATCTCTGTTTTCCCAATTTCAGAAACGAGTTACTGTTCCAAAAAAAAAAAAAAAAAA] consensusID : consensus_10076#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence [TTTTTTTTTTTTTTTAAACCTAACGATTATTCTCTGAATCATTAGTTCGTGTACACTTGCTAGCAGCTACTTCTTTCTATACTGCAATCTAGCCTGTCCATGCAAGGAGATAGGACTGAAAACTAACGAAATCTTGGGACATTTGCTCAAAGACCATGAGCACAGAGAACACCCCCATCCCTACTAAAACTGGCTTTGCACTAGTCAAGTCCACATTGCCACTGCCACCGGCGACAGATGATTCCGCTTCGACAGATCCAGCTCTCGAATCTGACATCCTGGAGGCGATAGCCACGCCATCAATGGAGGAAGAACGCCATACAAGATGGTCATGCAGTAACCGCCTGCAATGTCAGTAGCAATGGAGAATGAATTCGGAACGGTAGCTGCAATTAGCACGGTTGGGGCAACCACAGCCCCTGCAGCGATTTTAGCTGAGCCTGTTGTTGTCCA] [-] EMBL AU057473 [TTTTTTTTTTTTTTTAAACCTAACGATTATTCTCTGAATCATTAGTTCGTGTACACTTGCTAGCAGCTACTTCTTTCTATACTGCAATCTAGCCTGTCCATGCAAGGAGATAGGACTGAAAACTAACGAAATCTTGGGACATTTGCTCAAAGACCATGAGCACAGAGAACACCCCCATCCCTACTAAAACTGGCTTTGCACTAGTCAAGTCCACATTGCCACTGCCACCGGCGACAGATGATTCCGCTTCGACAGATCCAGCTCTCGAATCTGACATCCTGGAGGCGATAGCCACGCCATCAATGGAGGAAGAACGCCATACAAGATGGTCATGCAGTAACCGCCTGCAATGTCAGTAGCAATGGAGAATGAATTCGGAACGGTAGCTGCAATTAGCACGGTTGGGGCAACCACAGCCCCTGCAGCGATTTTAGCTGAGCCTGTTGTTGTCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10076#0 TTTTTTAGCGAACAAAAGCGATTTATTTACATACGTACAATCGTATATACAATCTATACT 60 consensus_10076#2 ------------------------------------------------------------ consensus_10076#1 ---------------------AGAGAAGCAGATTGCAGGTGAACCTGTACACAACGTGTT 39 consensus_10076#0 AATTTTTCAGGAGATATGCAAGCTACACTGACAAATTACATGTTTAAACCTAACGATTAT 120 consensus_10076#2 ------------------------------TTTTTTTTTTTTTTTAAACCTAACGATTAT 30 consensus_10076#1 CTTGCTAGTGCAGTAGTGCTACAGCGGAGACGCTCACTCTGTATTAAGCATATCCAGGAT 99 **** * ** * * ** consensus_10076#0 TCTCTGAATCATTAGTTCGGTGTACACTTGCTAGCAGCTACTTCTTTCTATACT------ 174 consensus_10076#2 TCTCTGAATCATTAGTTCG-TGTACACTTGCTAGCAGCTACTTCTTTCTATACT------ 83 consensus_10076#1 G-TCAAACCCATCAAGATC-CGTGGAGATGCTGAGCGCGATGTCGTCCCACACGAGCAAG 157 ** * *** * ** * **** ** * ** * * * ** consensus_10076#0 ----GCAAT--CTAGCCTGTCCATGCAAGGAGATAGGACTGAAAACTAACGAAATC---T 225 consensus_10076#2 ----GCAAT--CTAGCCTGTCCATGCAAGGAGATAGGACTGAAAACTAACGAAATC---T 134 consensus_10076#1 GACAGCAATGGCACGATGCTCCCGACGAGTATCGAGAGCCGAATCCTCACGAGGTCCCCT 217 ***** * * *** * ** * ** * *** ** **** ** * consensus_10076#0 TGGGACATTTGCTCAAAGACCATGAGCACAGAGAACACCCCCATCCCTACTAAAACTGGC 285 consensus_10076#2 TGGGACATTTGCTCAAAGACCATGAGCACAGAGAACACCCCCATCCCTACTAAAACTGGC 194 consensus_10076#1 CCAAGCGTGAAGATGATCACCGGAAGCGTTGCAGGGACCTGC-TCCCAGTTGGTGTTAGC 276 * * * *** *** * *** * **** * * ** consensus_10076#0 T--TTGCACTAGTCAAGTCCACATTGCCACTGC---CACC---GGCGACAG--ATGATTC 335 consensus_10076#2 T--TTGCACTAGTCAAGTCCACATTGCCACTGC---CACC---GGCGACAG--ATGATTC 244 consensus_10076#1 TGGCAGGGTCAGGCCGGCACCGAATGCTACTGCAGACACCTCGATCGTCAGCAGTAATCC 336 * * ** * * * * *** ***** **** ** *** * ** * consensus_10076#0 CGCTTC----GACAGATCCAGCT-----CTCGAATCTGACATCC-TGGAGGCGATAGCCC 385 consensus_10076#2 CGCTTC----GACAGATCCAGCT-----CTCGAATCTGACATCC-TGGAGGCGATAGCC- 293 consensus_10076#1 TGCATCAGTAGACAGATCCCGATGGTAGTTAGTACTTAGTACTAGTGCGCAAGACAGATC 396 ** ** ********* * * * * * * * ** ** ** consensus_10076#0 ACGCCATCAATGGAGGAAGAACGCCATACAAGATGGTCATGCAGTAACCGCCTGCAAT-- 443 consensus_10076#2 ACGCCATCAATGGAGGAAGAACGCCATACAAGATGGTCATGCAGTAACCGCCTGCAAT-- 351 consensus_10076#1 ATGTTGATGACAGCAAGAACCTGAGGTGTATGGATGTAATATGGTTATCAGCTACAGTAG 456 * * * * * * * * * ** ** ** * * ** ** * consensus_10076#0 GTCAGT---------AGCAATGGAGAATGAATTCGGAACGGTA----GCTGCAATTAGCA 490 consensus_10076#2 GTCAGT---------AGCAATGGAGAATGAATTCGGAACGGTA----GCTGCAATTAGCA 398 consensus_10076#1 GTTTGCTCTTACTTCAGCACAGTGCATTGTGTTGCAAGTAGTATGGAGCTCCCAGTGGGG 516 ** * **** * * ** ** * *** *** * * * * consensus_10076#0 CGGTTGGGG------CAACCACAGCCCCTGCAGCGATGT-AGCTGAGCCTGTTGTTGTCC 543 consensus_10076#2 CGGTTGGGG------CAACCACAGCCCCTGCAGCGATTTTAGCTGAGCCTGTTGTTGTCC 452 consensus_10076#1 AGAGTGGGTGTTTGTTCGTCATTGTCTCTACA-CTTTCAGAAATGAGTTACTACTCCACT 575 * **** ** * * ** ** * * * **** * * * consensus_10076#0 ACAGCCGTTTTCGCTCCACGATGCCTTAATGCTTCTTCTTCATGTCCTTGGGCTGAAGAA 603 consensus_10076#2 A----------------------------------------------------------- 453 consensus_10076#1 ACATGCCATCTTTGAATTCCAGTTGGGCGAACCAGTGTTTGTTCATCTCTGTTTTCCCAA 635 * consensus_10076#0 GAGACAAGATTGGTCATCTGCTCAATGAAGAACTGTGAAGCTCCCAGCAGTGTTCCGATC 663 consensus_10076#2 ------------------------------------------------------------ consensus_10076#1 TTTCAGAAACGAGTTACTGTTCCAAAAAAAAAAAAAAAAAA------------------- 676 consensus_10076#0 AGCGACGTCCCGACAGCAAGGAGTGAGAACGTCTCCACAACAGTATAACTCCATTCTGTA 723 consensus_10076#2 ------------------------------------------------------------ consensus_10076#1 ------------------------------------------------------------ consensus_10076#0 TTAAGCATATCCAGGATGTCAAACCCATCAAGATCCGTGGAGATGCTGAGCGCGATGTCG 783 consensus_10076#2 ------------------------------------------------------------ consensus_10076#1 ------------------------------------------------------------ consensus_10076#0 TCCCACACGAGCAAGGACAGCAATGGCACGATGCTCCCGACGAGTATCGAGAGCCGAATC 843 consensus_10076#2 ------------------------------------------------------------ consensus_10076#1 ------------------------------------------------------------ consensus_10076#0 CTCACGAGGTCCCCTCCAAGGTACGCGCATATCACTGGTGCGATATCATGGAAGACCAGC 903 consensus_10076#2 ------------------------------------------------------------ consensus_10076#1 ------------------------------------------------------------ consensus_10076#0 GTGAAGATGATCACCGGAAGCGTTGCAGGGACCTGCTCCCAGTTGGTGTTAGCTGGCAGG 963 consensus_10076#2 ------------------------------------------------------------ consensus_10076#1 ------------------------------------------------------------ consensus_10076#0 GTCAGGCCGGCACCGAATGCTACTGCAGACACCTCGATCGTCAGCAGTAATCCTATCATG 1023 consensus_10076#2 ------------------------------------------------------------ consensus_10076#1 ------------------------------------------------------------ consensus_10076#0 ACGAAAGTGAGCAGCTGGTTCACTTTGTCGGTGACGCCCGTGCCACCGGCGGCGATGAGG 1083 consensus_10076#2 ------------------------------------------------------------ consensus_10076#1 ------------------------------------------------------------ consensus_10076#0 AGCGCAAGGGCGGCGGTGAAGGCGCAGCCGGAGACGGGCTCGGGAACGCCGGCGACCACG 1143 consensus_10076#2 ------------------------------------------------------------ consensus_10076#1 ------------------------------------------------------------ consensus_10076#0 CT 1145 consensus_10076#2 -- consensus_10076#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||