Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 10078 cluster # 10078       Sequences # 7       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10078#0 length = 1068 sequences # 7  

consensusID : consensus_10078#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1068
fasta sequence
                              [TTTTTGTTTTTTTTTTTGACGTATCAATCCATTACATTACATTGCCCTTTTCACATCATTACAATTTCAGGCTCAGCTCAGACATTCAGTAGAACAAAATTTTTCCTAATAATGCAGCTTTCTTGTTATTGTTTTATTATTAGACATGTTATGGAAGAGAAAAAACTCACAACCGAGAAACACAAGCAAATAAACCATACACCAAAATAGGTTGGCACCCACAAAGCACACACATATATCTAGCTTTGGTAATATTTATAAGCGGATCAATTTCTTCCGTGGCCAAGCTGCTGCAGGAGTTGTCCATGCCCCCTCCCATTAGCGTTTCCATGATCGTTGTCCGATATCTTAAGCTTGCGAACGACTTCATGCATGTGTACCTCCTGATGCATATGATTCATCTTCTGATGCACCTCCACGCCGTGATACTCAATTGATGTCCCTCCCTTGTGCTTTTGCTCGAGATCCTTAATTTTTCGCTGCAATTTCTTGTTCTCCTCCTCGAGACGCCTGTTCTCTTTCCTCTTTGTGTCTACCTTTAAATTGAGATTTTCTTTGTCTCTCTTCAATCTTTTCTGCTCTTCCTCGGCAGCTGTTTTGTCGGCCTGGAGAACCTTTTTTTCTTCCCTTTTTTCCCTTAGTTTTATGTCTAGATCTTCCTTCTGTCTCTTCATTCTTTCAAGGTCTTTCTTGTATCTCTCTATTTCTTCCTTTACATCATCCGGAATAACCGATTCAATCTTGACACTGGATGCCATCTTCTTGAGGCGTTCGTACAGCTTCCCCACATCCACAGTCCCTCGCACCTCCACCTTCAAACTGCTGCTCTCTGGATTTTTGCTGTAGTTTCTATACTCGATAGATTCTTTGAATTCTTGACGAAGTACATTCTTGACCTCAGTCTCGCTTGCACCCCGAACCTTTAGCTTCACTTGTTTCTTGTCACCCATTTTGCTTCAGCTATGGAATGAAACAAAAACGAGAAGGAAGTCGGAGACAAGTGCAAGATCGAGCTAGCTAGTTCTGCTTCAAGCACAACATCGCCATGTGTTCTGAACTTAAATACGG]

[+] EMBL CF319984             [TTTTTGTTTTTTTTTTTGACGTATCAATCCATTACATTACATTGCCCTTTTCACATCATTACAATTTCAGGCTCAGCTCAGACATTCAGTAGAACAAAACGGTTCCTAATAATGCAGCTTTCTTGTTATTGTTTTATTATTAGACATGTTATGGAAGAGAAAAAACTCACAACCGAGAAACACAAGCAAATAAACCATACACCAAAATAGGTTGGCACCCACAAAGCACACACATATATCTAGCTTTGGTAATATTTATAAGCGGATCAATTTCTTCCGTGGCCAAGCTGCTGCAGGAGTTGTCCATGCCCCCTCCCATTAGCGTTTCCATGATCGTTGTCCGATATCTTAAGCTTGCGAACGACTTCATGCATGTGTACCTCCTGATGCATATGATTCATCTTCTGATGCACCTCCACGCCGTGATACTCAATTGATGTCCCTCCCTTGTGCTTTTGCTCGAGATCCTTAATTTTTCGCTGCAATTTCTTGTTCTCCTCCTCGAGACGCCTGTTCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CF318755             [                                                                                                   TTTTTCCTAATAATGCAGCTTTCTTGTTATTGTTTTATTATTAGACATGTTATGGAAGAGAAAAAACTCACAACCGAGAAACACAAGCAAATAAACCATACACCAAAATAGGTTGGCACCCACAAAGCACACACATATATCTAGCTTTGGTAATATTTATAAGCGGATCAATTTCTTCCGTGGCCAAGCTGCTGCAGGAGTTGTCCATGCCCCCTCCCATTAGCGTTTCCATGATCGTTGTCCGATATCTTAAGCTTGCGAACGACTTCATGCATGTGTACCTCCTGATGCATATGATTCATCTTCTGATGCACCTCCACGCCGTGATACTCAATTGATGTCCCTCCCTTGTGCTTTTGCTCGAGATCCTTAATTTTTCGCTGCAATTTCTTGTTCTCCTCCTCGAGACGCCTGTTCTCTTTCCTCTTTGTGTCTACCTTTAAATTGAGATTTTCTTTGTCTCTCTTCAATCTTTTCTGCTCTTCCTCGGCAGCTGTTTTGTCGGCCTGGAGAACCTTTTTTTCTTCCCTTTTTTCCCTTAGTTTTATGTCTAGATCTTCCTTCTGTCT                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL AU166333             [                                                                                                 ttTTTTTCCTAATAATGCAGCTTTCTTGTTATTGTTTTATTATTAGACATGTTATGGAAGAGAAAAAACTCACAACCGAGAAACACAAGCAAATAAACCATACACCAAAATAGGTTGGCACCCACAAAGCACACACATATATCTAGCTTTGGTAATATTTATAAGCGGATCAATTTCTTCCGTGGCCAAGCTGCTGCAGGAGTTGTCCATGCCCCCTCCCATTAGCGTTTCCATGATCGTTGTCCGATATCTTAAGCTTGCGAACGACTTCATGCATGTGTACCTCCTGATGCATATGATTCATCTTCTGATGCACCTCCACGCCGTGATACTCAATTGATGTCCCTCCCTTGTGCTTTTGCTCGAGATCCTTAATTTTTCGCTGCAATTTCTTGTTCTCCTCCTCGAGACGCCTGTTCTCTTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CF319983             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CTCGAGACGCCTGTTCTCTTTCCTCTTTGTGTCTACCTTTAAATTGAGATTTTCTTTGTCTCTCTTCAATCTTTTCTGCTCTTCCTCGGCAGCTGTTTTGTCGGCCTGGAGAACCTTTTTTTCTTCCCTTTTTTCCCTTAGTTTTATGTCTAGATCTTCCTTCTGTCTCTTCATTCTTTCAAGGTCTTTCTTGTATCTCTCTATTTCTTCCTTTACATCATCCGGAATAA CGATTCAATCTTGACACTGGATGCCATCTTCTTGAGGCGTTCGTACAGCTTCCCCACATCCACAGTCCCTCGCACCTCCACCTTCAAACTGCTGCTCTCTGGATTTTTGCTGTAGTTTCTATACTCGATAGATTCTTTGAATTCTTGACGAAGTACATTCTTGACCTCAGTCTCGCTTGCACCCCGAACCTTTAGCTTCACTTGTTTCTTGTCACCCATTTTGCTTCAGCTATGGAATGAAACAAAAACGAGAAGGAAGTCGGAGACAAGTGCAAGATCGAGCTAGCTAG                                               ]
[-] EMBL CF318754             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TTTGTGTCTACCTTTAAATTGAGATTTTCTTTGTCTCTCTTCAATCTTTTCTGCTCTTCCTCGGCAGCTGTTTTGTCGGCCTGGAGAACCTTTTTTTCTTCCCTTTTTTCCCTTAGTTTTATGTCTAGATCTTCCTTCTGTCTCTTCATTCTTTCAAGGTCTTTCTTGTATCTCTCTATTTCTTCCTTTACATCATCCGGAATAACCGATTCAATCTTGACACTGGATGCCATCTTCTTGAGGCGTTCGTACAGCTTCCCCACATCCACAGTCCCTCGCACCTCCACCTTCAAACTGCTGCTCTCTGGATTTTTGCTGTAGTTTCTATACTCGATAGATTCTTTGAATTCTTGACGAAGTACATTCTTGACCTCAGTCTCGCTTGCACCCCGAACCTTTAGCTTCACTTGTTTCTTGTCACCCATTTTGCTTCAGCTATGGAATGAATCAAAAACGAGAAGGAAGTCGGAGACAAGTGCAAGATCGAGCTAGCTAGTTCTGCTTCAAGCACAACATCGCCATGTGTTCTGAACTTAAATACGG]
[-] EMBL AK062765             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TATGTCTAGATCTTCCTTCTGTCTCTTCATTCTTTCAAGGTCTTTCTTGTATCTCTCTATTTCTTCCTTTACATCATCCGGAATAACCGATTCAATCTTGACACTGGATGCCATCTTCTTGAGGCGTTCGTACAGCTTCCCCACATCCACAGTCCCTCGCACCTCCACCTTCAAACTGCTGCTCTCTGGATTTTTGCTGTAGTTTCTATACTCGATAGATTCTTTGAATTCTTGACGAAGTACATTCTTGACCTCAGTCTCGCTTGCACCCCGAACCTTTAGCTTCACTTGTTTCTTGTCACCCATTTTGCTTCAGCTATGGAATGAAACAAAAACGAGAAGGAAGTCGGAGACAAGTGCAAGATCGAGCTAGCTAG                                               ]
[-] EMBL OSC111461            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TTTCAAGGTCTTTCTTGTATCTCTCTATTTCTTCCTTTACATCATCCGGAATAACCGATTCAATCTTGACACTGGATGCCATCTTCTTGAGGCGTTCGTACAGCTTCCCCACATCCACAGTCCCTCGCACCTCCACCTTCAAACTGCTGCTCTCTGGATTTTTGCTGTAGTTTCTATACTCGATAGATTCTTTGAATTCTTGACGAAGTACATTCTTGACCTCAGTCTCGCTTGCACCCCGAACCTTTAGCTTCACTTGTTTCTTGTCACCCATTTTGCTTCAGCTATGGAATGAAACAAAAACGAGAAGGAAGTCGGcgg                                                                       ]


>consensus_10078#0 TTTTTGTTTTTTTTTTTGACGTATCAATCCATTACATTACATTGCCCTTTTCACATCATT ACAATTTCAGGCTCAGCTCAGACATTCAGTAGAACAAAATTTTTCCTAATAATGCAGCTT TCTTGTTATTGTTTTATTATTAGACATGTTATGGAAGAGAAAAAACTCACAACCGAGAAA CACAAGCAAATAAACCATACACCAAAATAGGTTGGCACCCACAAAGCACACACATATATC TAGCTTTGGTAATATTTATAAGCGGATCAATTTCTTCCGTGGCCAAGCTGCTGCAGGAGT TGTCCATGCCCCCTCCCATTAGCGTTTCCATGATCGTTGTCCGATATCTTAAGCTTGCGA ACGACTTCATGCATGTGTACCTCCTGATGCATATGATTCATCTTCTGATGCACCTCCACG CCGTGATACTCAATTGATGTCCCTCCCTTGTGCTTTTGCTCGAGATCCTTAATTTTTCGC TGCAATTTCTTGTTCTCCTCCTCGAGACGCCTGTTCTCTTTCCTCTTTGTGTCTACCTTT AAATTGAGATTTTCTTTGTCTCTCTTCAATCTTTTCTGCTCTTCCTCGGCAGCTGTTTTG TCGGCCTGGAGAACCTTTTTTTCTTCCCTTTTTTCCCTTAGTTTTATGTCTAGATCTTCC TTCTGTCTCTTCATTCTTTCAAGGTCTTTCTTGTATCTCTCTATTTCTTCCTTTACATCA TCCGGAATAACCGATTCAATCTTGACACTGGATGCCATCTTCTTGAGGCGTTCGTACAGC TTCCCCACATCCACAGTCCCTCGCACCTCCACCTTCAAACTGCTGCTCTCTGGATTTTTG CTGTAGTTTCTATACTCGATAGATTCTTTGAATTCTTGACGAAGTACATTCTTGACCTCA GTCTCGCTTGCACCCCGAACCTTTAGCTTCACTTGTTTCTTGTCACCCATTTTGCTTCAG CTATGGAATGAAACAAAAACGAGAAGGAAGTCGGAGACAAGTGCAAGATCGAGCTAGCTA GTTCTGCTTCAAGCACAACATCGCCATGTGTTCTGAACTTAAATACGG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)