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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10084#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1219 fasta sequence
[CACACATGGCAGGTACAAACCACTGAGCTAACCACAGTAGCTCACAGGCCATTATCCTGTCAGTACTTAAGAGAGTGAAGCACGCAACACACGGTTGCTAATCTCCTTAGCCCTCTCCTCCATTGGAGCTATAGCTAGCAAAC-TTTTTTTTTTACTGAGCAAATTCAGTTAGCGAAGCGAAAACCATGAAGAAGGAGATCATTATCAGGATTTCCGTGAAAACCGACAAATGCCAGAAGAAGGCCATGAAAGAGGCTGCTACTGTCAGCGGGGTGCAGTCGGTGACGCTGGCCGGCGGCGACCGGAACCTGCTGCTGGTGATCGGCGAGGGCGTGGACACGAACAAGCTGACCAAGAAGCTCAAGAGGAAGGTGGGCTCCGGTGAGATCGTCGAGCTGAGGACCGTCGACACGTTCGAGGCGG-CGGCGGCGATGTTCCCGGGCGGGATGATCATGCCGCCGCCGGCGCCGGGGAGCAAGGACGCCGCCGCCGCCAGGGCGATGGCGACGACGCGGGCGTCGCCGTACCACTACCAGCCG-TCGCCGTACGGCCCGTACCACCAGCAGCAGCAGTGGCAGCCGCCGTACGCCATGGCGCCCAGCCCGTACGCGTA-CCCGTACCAGTACCACCCGTCGCCGATGGCGATGGCCGCCGGCGGCGGCGGCTACGGCTACGGCGGCAGCAGCTACTC-CCGCGCGGTGGCGCTCAGCCACCCGGCCATCTACTCGCCGCTGGTGGAGAAGCACGACTACCACCCCATGAACCACTCCACCACCACCAAGAAGAAGACCACCACCACCACCACCACCACCGGCGCCGGCACCGGCCGCGCCGCCGCCGCAGCCGCCGGCGGCAAGACCTTCAAGGCGGTGTCCCGCTCCCGCCGCCACCACGAGAGCGACAGCAACGCCTGCTGCATTCTCTAGCACCAAATTAATCTCGATCCATAAAATTACCTATATATGTGCATGCATGTACATATGTGTGATTTTGCTTGTTGCTTTCTTGCCTTGTTCTTTTCCATTTTTGAAGGTCGTTAACCTTTTGCTGCTTTCTTTTGCGGTTAATTAATTTGGCAGCTTTTGCTGCACAACCTAGTGAATTAACCATGTATAATAATAAAACTGTATATCGTAAAAACTGTACCTGTAAAACTCTGTTACTGCTTGGATTTCTTCAGAGATTATCTGAAGTTCTTGCAAGAACAAAAAAAAAAAAA]
[+] EMBL AK102380 [CACACATGGCAGGTACAAACCACTGAGCTAACCACAGTAGCTCACAGGCCATTATCCTGTCAGTACTTAAGAGAGTGAAGCACGCAACACACGGTTGCTAATCTCCTTAGCCCTCTCCTCCATTGGAGCTATAGCTAGCAAACTTTTTTTTTTTACTGAGCAAATTCAGTTAGCGAAGCGAAAACCATGAAGAAGGAGATCATTATCAGGATTTCCGTGAAAACCGACAAATGCCAGAAGAAGGCCATGAAAGAGGCTGCTACTGTCAGCGGGGTGCAGTCGGTGACGCTGGCCGGCGGCGACCGGAACCTGCTGCTGGTGATCGGCGAGGGCGTGGACACGAACAAGCTGACCAAGAAGCTCAAGAGGAAGGTGGGCTCCGGTGAGATCGTCGAGCTGAGGACCGTCGACACGTTCGAGGCGG CGGCGGCGATGTTCCCGGGCGGGATGATCATGCCGCCGCCGGCGCCGGGGAGCAAGGACGCCGCCGCCGCCAGGGCGATGGCGACGACGCGGGCGTCGCCGTACCACTACCAGCCG TCGCCGTACGGCCCGTACCACCAGCAGCAGCAGTGGCAGCCGCCGTACGCCATGGCGCCCAGCCCGTACGCGTA CCCGTACCAGTACCACCCGTCGCCAATGGCGATGGCCGCCGGCGGCGGCGGCTACGGCTACGGCGGCAGCAGCTACTC CCGCGCGGTGGCGCTCAGCCACCCGGCCATCTACTCGCCGCTGGTGGAGAAGCACGACTACCACCCCATGAACCACTCCACCACCACCAAGAAGAAGACCACCACCACCACCACCACCACCGGCGCCGGCACCGGCCGCGCCGCCGCCGCAGCCGCCGGCGGCAAGACCTTCAAGGCGGTGTCCCGCTCCCGCCGCCACCACGAGAGCGACAGCAACGCCTGCTGCATTCTCTAGCACCAAATTAATCTCGATCCATAAAATTACCTATATATGTGCATGCATGTACATATGTGTGATTTTGCTTGTTGCTTTCTTGCCTTGTTCTTTTCCATTTTTGAAGGTCGTTAACCTTTTGCTGCTTTCTTTTGCGGTTAATTAATTTGGCAGCTTTTGCTGCACAACCTAGTGAATTAACCATGTATAATAATAAAACTGTATATCGTAAAAACTGTACCTGTAAAACTCTGTTACTGCTTGGATTTCTTCAGAGATTATCTG ]
[+] EMBL C26476 [ GCCATTATCCTGTCAGTACTTAAGAGAGTGAAGCACGCAACACACGGTTGCTAATCTCCTTAGCCCTCTCCTCCATTGGAGCTATAGCTAGCAAAC TTTTTTTTTTACTGAGCAAATTCAGTTAGCGAAG NATAACCATGAAGAAGGAGATCATTATCAGGATTTCCGTGAAAACCGACAAATGCCAGAAGAAGGCCATGAAAGNGGCTGCTACTGTCAGCGGGGTGCAGTCGGTGACGCTGGCCGGCGGCGACCGGAACCTGCTGCTGGTGATCGGCGAGGGCGTGGACACGAACAAGCTGACCANGAAGCTCAAGAGGAAGGTGGGCTCCGGTNAGATCGTCGAGCTGAGGACCGTCGACACGTTCGGGGGGGCCGGCGGCGATGTTCCC ]
[+] EMBL AK059791 [ CTTAGCCCTCTCCTCCATTGGAGCTATAGCTAGCAAAC TTTTTTTTTTACTGAGCAAATTCAGTTAGCGAAGCGAAAACCATGAAGAAGGAGATCATTATCAGGATTTCCGTGAAAACCGACAAATGCCAGAAGAAGGCCATGAAAGAGGCTGCTACTGTCAGCGGGGTGCAGTCGGTGACGCTGGCCGGCGGCGACCGGAACCTGCTGCTGGTGATCGGCGAGGGCGTGGACACGAACAAGCTGACCAAGAAGCTCAAGAGGAAGGTGGGCTCCGGTGAGATCGTCGAGCTGAGGACCGTCGACACGTTCGAGGCGG CGGCGGCGATGTTCCCGGGCGGGATGATCATGCCGCCGCCGGCGCCGGGGAGCAAGGACGCCGCCGCCGCCAGGGCGATGGCGACGACGCGGGCGTCGCCGTACCACTACCAGCCG TCGCCGTACGGCCCGTACCACCAGCAGCAGCAGTGGCAGCCGCCGTACGCCATGGCGCCCAGCCCGTACGCGTA CCCGTACCAGTACCACCCGTCGCCGATGGCGATGGCCGCCGGCGGCGGCGGCTACGGCTACGGCGGCAGCAGCTACTC CCGCGCGGTGGCGCTCAGCCACCCGGCCATCTACTCGCCGCTGGTGGAGAAGCACGACTACCACCCCATGAACCACTCCACCACCACCAAGAAGAAGACCACCACCACCACCACCACCACCGGCGCCGGCACCGGCCGCGCCGCCGCCGCAGCCGCCGGCGGCAAGACCTTCAAGGCGGTGTCCCGCTCCCGCCGCCACCACGAGAGCGACAGCAACGCCTGCTGCATTCTCTAGCACCAAATTAATCTCGATCCATAAAATTACCTATATATGTGCATGCATGTACATATGTGTGATTTTGCTTGTTGCTTTCTTGCCTTGTTCTTTTCCATTTTTGAAGGTCGTTAACCTTTTGCTGCTTTCTTTTGCGGTTAATTAATTTGGCAGCTTTTGCTGCACAACCTAGTGAATTAACCATGTATAATAATAAAACTGTATATCGTAAAAACTGTACCTGTAAAACTCTGTTACTGCTTGGATTTCTTCAGAGATTATCTGAAG ]
[+] EMBL AU108638 [ aatTACCAGCCGTTCGCCGTACGGCCCGTACCACCAGCAGCAGAAGTGGCAGCCGCCGTACGCCATGGCNCCCAGCCCGTACGCGTACCCCGTACCAGTACCACCCGTCGCCGATGGCGATGCGCGCCGGCGGCGGCGGCTACGGCTACGGCGGCAGCAGCTACTCNCCGCGCGGTGGCGCTCAGCCACCCGGCCATCTACTCGCCGCTGGTGGAGAAGCACGACTACCACCCCATGAACCACTCCACCACCACCAAGAAGAAGACCACCACCACCACCACCACCACCGGCGCCGGCACCGGCCGCGCCGCCGCCGCAGCCGCCGGCGGCAAGACCTTCAAGGCGGTGTCCCGCTCCCGCCGCCACCACGAGAGCGACAGCAACGCCTGCTGCATTCTCTAGCACCAAATTAATCTCGATCCATAAAATTACCTATATATGTGCATGCATGTACATATGTGTGATTTTGCTTGTTGCTTTCTTGCCTTGTTCTTTTCCATTTTTGAAGGTCGTTAACCTTTTGCTGCTTTCTTTTGCGGTTAATTAATTTGGCAGCTTTTGCTGCACAACCTAGTGAATTAACCATGTATAATAATAAAACTGTATATCGTAAAAACTGTACCTGTAAAACTCTGTTACTGCTaaaaaaa ]
[+] EMBL AU070972 [ GCCGCCACCACGAGAGCGACA CAACGCCTGCTGCATTCTCTAGCACCAAATTAATCTCGATCCATAAAATTACCTATATATGTGCATGCATGTACATATGTGTGATTTTGCTTGTTGCTTTCTTGCCTTGTTCTTTTCCATTTTTGAAGGTCGTTAACCTTTTGCTGCTTTCTTTTGCGGTTAATTAATTTGGCAGCTTTTGCTGCACAACCTAGTGAATTAACCATGTATAATAATAAAACTGTATATCGTAAAAACTGTACCTGTAAAACTCTGTTACTGCTTGGATTTCTTCAGAGATTATCTGAAGTTCTTGCAAGAACAAAAAAAAAAAAA]
[+] EMBL AU108582 [ CACCACGAGAGCGACAGCAACGCNTGCTGCATTCTCTAGCACCAAATTAATCTCGATCCATAAAATTACCTATATATGTGCATGCATGTACATATGTGTGATTTTGCTTGTTGCTTTCTTGCCTTGTTCTTTTCCATTTTTGAAGGTCGTTAACCTTTTGCTGCTTTCTTTTGCGGTTAATTAATTTGGCAGNTTTTGCTGCACAACCTAGTGAATTAACCATGTATAATAATAAAACTGTATATCGTAAAAACTGTACCTGTAAAACTCTGTTACTGCTaaaaaaa ]
consensusID : consensus_10084#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence
[NCNAANTACTTAAGAGAGTGAAGCACGCAACACACGGTTNCTAATCTCCTTAGCCCTCTNCTCCATTGGAGCTATAGCTAGCAAACTTTNNNANTTACTGAGCAAATTCAGTTAGCGACGANAGACCATGAAGAAGGAGATCATTATCAGGATTTCCGTGAAAACCGACAAATGCCAGAAGAAGGCCATGAAAGAGGCTGCTACTTGTCAGCGGGGTGCAGTCGGTNACGCTGGCCGGCGGGAACCGGAACCTTGCTTCTTGGTGATCGGCGAGGGCNTGGACACGAACAAGCTNACCCAAGAAGCTCAAGAGGAAGGTTGGCTTCGGTTAGATCGTCGAGCTTAGGGNCCTCGGACACGGTTCGAGGCNGCGGCCGGCAAATGTTTCCCGGG]
[+] EMBL C26749 [NCNAANTACTTAAGAGAGTGAAGCACGCAACACACGGTTNCTAATCTCCTTAGCCCTCTNCTCCATTGGAGCTATAGCTAGCAAACTTTNNNANTTACTGAGCAAATTCAGTTAGCGACGANAGACCATGAAGAAGGAGATCATTATCAGGATTTCCGTGAAAACCGACAAATGCCAGAAGAAGGCCATGAAAGAGGCTGCTACTTGTCAGCGGGGTGCAGTCGGTNACGCTGGCCGGCGGGAACCGGAACCTTGCTTCTTGGTGATCGGCGAGGGCNTGGACACGAACAAGCTNACCCAAGAAGCTCAAGAGGAAGGTTGGCTTCGGTTAGATCGTCGAGCTTAGGGNCCTCGGACACGGTTCGAGGCNGCGGCCGGCAAATGTTTCCCGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10084#0 CACACATGGCAGGTACAAACCACTGAGCTAACCACAGTAGCTCACAGGCCATTATCCTGT 60
consensus_10084#1 ---------------------------------------------------------NCN 3
consensus_10084#0 CAGTACTTAAGAGAGTGAAGCACGCAACACACGGTTGCTAATCTCCTTAGCCCTCTCCTC 120
consensus_10084#1 AANTACTTAAGAGAGTGAAGCACGCAACACACGGTTNCTAATCTCCTTAGCCCTCTNCTC 63
* ********************************* ******************* ***
consensus_10084#0 CATTGGAGCTATAGCTAGCAAACTTTTTTTTTTACTGAGCAAATTCAGTTAGCGAAGCGA 180
consensus_10084#1 CATTGGAGCTATAGCTAGCAAACTTTNNNANTTACTGAGCAAATTCAGTTAGCGACG-AN 122
************************** ************************ *
consensus_10084#0 AAACCATGAAGAAGGAGATCATTATCAGGATTTCCGTGAAAACCGACAAATGCCAGAAGA 240
consensus_10084#1 AGACCATGAAGAAGGAGATCATTATCAGGATTTCCGTGAAAACCGACAAATGCCAGAAGA 182
* **********************************************************
consensus_10084#0 AGGCCATGAAAGAGGCTGCTACT-GTCAGCGGGGTGCAGTCGGTGACGCTGGCCGGCGGC 299
consensus_10084#1 AGGCCATGAAAGAGGCTGCTACTTGTCAGCGGGGTGCAGTCGGTNACGCTGGCCGGCGGG 242
*********************** ******************** **************
consensus_10084#0 GACCGGAACCT-GCTGCT-GGTGATCGGCGAGGGCGTGGACACGAACAAGCTGACC-AAG 356
consensus_10084#1 AACCGGAACCTTGCTTCTTGGTGATCGGCGAGGGCNTGGACACGAACAAGCTNACCCAAG 302
********** *** ** **************** **************** *** ***
consensus_10084#0 AAGCTCAAGAGGAAGGTGGGCTCCGGTGAGATCGTCGAGCTGAGGACCGTCG-ACACG-T 414
consensus_10084#1 AAGCTCAAGAGGAAGGTTGGCTTCGGTTAGATCGTCGAGCTTAGGGNCCTCGGACACGGT 362
***************** **** **** ************* *** * *** ***** *
consensus_10084#0 TCGAGGCGGCGGC-GGCGA-TGTTCCCGGGCGGGATGATCATGCCGCCGCCGGCGCCGGG 472
consensus_10084#1 TCGAGGCNGCGGCCGGCAAATGTTTCCCGGG----------------------------- 393
******* ***** *** * **** ** **
consensus_10084#0 GAGCAAGGACGCCGCCGCCGCCAGGGCGATGGCGACGACGCGGGCGTCGCCGTACCACTA 532
consensus_10084#1 ------------------------------------------------------------
consensus_10084#0 CCAGCCGTCGCCGTACGGCCCGTACCACCAGCAGCAGCAGTGGCAGCCGCCGTACGCCAT 592
consensus_10084#1 ------------------------------------------------------------
consensus_10084#0 GGCGCCCAGCCCGTACGCGTACCCGTACCAGTACCACCCGTCGCCGATGGCGATGGCCGC 652
consensus_10084#1 ------------------------------------------------------------
consensus_10084#0 CGGCGGCGGCGGCTACGGCTACGGCGGCAGCAGCTACTCCCGCGCGGTGGCGCTCAGCCA 712
consensus_10084#1 ------------------------------------------------------------
consensus_10084#0 CCCGGCCATCTACTCGCCGCTGGTGGAGAAGCACGACTACCACCCCATGAACCACTCCAC 772
consensus_10084#1 ------------------------------------------------------------
consensus_10084#0 CACCACCAAGAAGAAGACCACCACCACCACCACCACCACCGGCGCCGGCACCGGCCGCGC 832
consensus_10084#1 ------------------------------------------------------------
consensus_10084#0 CGCCGCCGCAGCCGCCGGCGGCAAGACCTTCAAGGCGGTGTCCCGCTCCCGCCGCCACCA 892
consensus_10084#1 ------------------------------------------------------------
consensus_10084#0 CGAGAGCGACAGCAACGCCTGCTGCATTCTCTAGCACCAAATTAATCTCGATCCATAAAA 952
consensus_10084#1 ------------------------------------------------------------
consensus_10084#0 TTACCTATATATGTGCATGCATGTACATATGTGTGATTTTGCTTGTTGCTTTCTTGCCTT 1012
consensus_10084#1 ------------------------------------------------------------
consensus_10084#0 GTTCTTTTCCATTTTTGAAGGTCGTTAACCTTTTGCTGCTTTCTTTTGCGGTTAATTAAT 1072
consensus_10084#1 ------------------------------------------------------------
consensus_10084#0 TTGGCAGCTTTTGCTGCACAACCTAGTGAATTAACCATGTATAATAATAAAACTGTATAT 1132
consensus_10084#1 ------------------------------------------------------------
consensus_10084#0 CGTAAAAACTGTACCTGTAAAACTCTGTTACTGCTTGGATTTCTTCAGAGATTATCTGAA 1192
consensus_10084#1 ------------------------------------------------------------
consensus_10084#0 GTTCTTGCAAGAACAAAAAAAAAAAAA 1219
consensus_10084#1 ---------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||