These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10085#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1009 fasta sequence [TTCCATTCCCATTCCTATCCCGAAAGCTCCCAAACCCCAGCCGGCGAGCGACACCGCCGGGCGCGCGAGGCGGCGGCTCACGAGCAGCGCCACCGAGGGCGCGAGCGGCCGGCCGGCCGGACGCCGGGGAGAGTGCCGGTGAGTTCGCGTCTCCCCGCAGCGGCAGCCAGCGAGACGCGGAGCGGCACGAAGACTTCCAGGAAAACATTGGTAGAACTGAAGAATAGACAGATATGGCTTCTGGTGGCATGAAGGACTTTTACCGGCAGAAGAAGAAAGGAGGTCCCACCAAAGCATCGTCATCTTCCAAGAAGAAAACACAGCATTACACTGGAGGGGCCTCTGTTGGGGCCTCAGACACTGCTCAGACATCAGCACTAATTTCTCATGGTAACCTAGATCTTAAAGATGATTTCAGTGAG-CAAGAGGAGCAGTTGCGACTGTTTGATATGGACATGAAGTTTGGCCCTTGCATTGGCGTTACTCGTCTTCAGCGTTGGGAACGTGCTTCTGCCATGGGTCTTCA-CCCACCACCTCATCTCAGGGATCTCTTACTGAACAATACTCATGCAGGCAATCACAATAACAATGGTCCCTCCCTTGAGTGCCTCTGGGAGGGCAAAGTCTAGAACAAACAAATAGTCTGTACTACTGTAAATCCTGCACTGTTCATAGCTACTCGCTATGCCTAGCCCTTCAA-ACCCCACCCCAACTGATGGATGAATCCCTGTATTTCTTCTTAGTCGAGGGCTTTGGGCTCAGTCAATGACCTTGTGTTGTCGCAATCCTTTGTTTCTGCTACGTTTTCTGACAATACTGCAGTGTTTCTTCAGTTTGTTCTTAATCCTAAGCTGTTACTAGTAAAAATAAGGAGAATGAGCTGGCAGTGTATCTCCAGTTTGCCCCAAATCCAATGTTTGCCAAAAGGATAATGTAACTGCTGGTGATTGATGCGAGAAAAAGGAAATATGGAAATAGCCAATTAAGTTAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK119678 [TTCCATTCCCATTCCTATCCCGAAAGCTCCCAAACCCCAGCCGGCGAGCGACACCGCCGGGCGCGCGAGGCGGCGGCTCACGAGCAGCGCCACCGAGGGCGCGAGCGGCCGGCCGGCCGGACGCCGGGGAGAGTGCCGGTGAGTTCGCGTCTCCCCGCAGCGGCAGCCAGCGAGACGCGGAGCGGCACGAAGACTTCCAGGAAAACATTGGTAGAACTGAAGAATAGACAGATATGGCTTCTGGTGGCATGAAGGACTTTTACCGGCAGAAGAAGAAAGGAGGTCCCACCAAAGCATCGTCATCTTCCAAGAAGAAAACACAGCATTACACTGGAGGGGCCTCTGTTGGGGCCTCAGACACTGCTCAGACATCAGCACTAATTTCTCATGGTAACCTAGATCTTAAAGATGATTTCAGTGAG CAAGAGGAGCAGTTGCGACTGTTTGATATGGACATGAAGTTTGGCCCTTGCATTGGCGTTACTCGTCTTCAGCGTTGGGAACGTGCTTCTGCCATGGGTCTTCA CCCACCACCTCATCTCAGGGATCTCTTACTGAACAATACTCATGCAGGCAATCACAATAACAATGGTCCCTCCCTTGAGTGCCTCTGGGAGGGCAAAGTCTAGAACAAACAAATAGTCTGTACTACTGTAAATCCTGCACTGTTCATAGCTACTCGCTATGCCTAGCCCTTCAA ACCCCACCCCAACTGATGGATGAATCCCTGTATTTCTTCTTAGTCGAGGGCTTTGGGCTCAGTCAATGACCTTGTGTTGTCGCAATCCTTTGTTTCTGCTACGTTTTCTGACAATACTGCAGTGTTTCTTCAGTTTGTTCTTAATCCTAAGCTGTTACTAGTAAAAATAAGGAGAATGAGCTGGCAGTGTATCTCCAGTTTGCCCCAAATCCAATGTTTGCCAAAAGGATAATGTAACTGCTGGTGATTGATGCGAGAAAAAGGAAATATGGAAATAGC ] [+] EMBL AK120041 [ CCGAAAGCTCCCAAACCCTAGCCGGCGAGCGACACCGCCGGGCGCGCGAGGCGGCGGCTCACGAGCAGCGCCACCGAGGGCGCGAGCGGCCGGCCGGCCGGACGCCGGGGAGAGTGCCGGTGAGTTCGCGTCTCCCCGCAGCGGCAGCCAGCGAGACGCGGAGCGGCACGA AGGAAAACATTGGTAGAACTGAAGAATAGACAGATATGGCTTCTGGTGGCATGAAGGACTTTTACCGGCAGAAGAAGAAAGGAGGTCCCACCAAAGCATCGTCATCTTCCAAGAAGAAAACACAGCATTACACTGGAGGGGCCTCTGTTGGGGCCTCAGACACTGCTCAGACATCAGCACTAATTTCTCATGGTAACCTAGATCTTAAAGATGATTTCAGTGAG CAAGAGGAGCAGTTGCGACTGTTTGATATGGACATGAAGTTTGGCCCTTGCATTGGCGTTACTCGTCTTCAGCGTTGGGAACGTGCTTCTGCCATGGGTCTTCT CCCACCACCTCATCTCAGGGATCTCTTACTGAACAATACTCATGCAGGCAATCACAATAACAATGGTCCCTCCCTTGAGTGCCTCTGGGAGGGCAAAGTCTAGAACAAACAAATAGTCTGTACTACTGTAAATCCTGCACTGTTCATAGCTACTCGCTATGCCTAGCCCTTCAA ACCCCACCCCAACTGATGGATGAATCCCTGTATTTCTTCTTAGTCGAGGGCTTTGGGCTCAGTCAACGACCTTGTGTTGTCGCAATCCTTTGTTTCTGCTACGTTTTCTGACAATACTGCAGTGTTTCTTCAGTTTGTTCTTAATCCTAAGCTGTTACTAGTAAAAATAAGGAGAATGAGCTGGCAGTGTATCTCCAGTTTGCCCCAAATCCAATGTTTGCCAAAAGGATAATGTAACTGCTGGTGATTGATGC ] [-] EMBL CA762520 [ ccaggccGAGCCAAGGGGAGCAGTTGCGACTGTTTGATATGGACATGAAGTTTGGCCCTTGCATGGGCGTTACTCGTTTTTAGCGTTGGGAACGTGCTTCTGCCATGGGTCTTCACCCCACCACCTCATCTCAGGGATCTCTTACTGAACAATACTCATGCAGGCAATCACAATAACAATGGTCCCTCCCTTGAGTGCCTCTGGGAGGGCAAAGTCTAGAACAAACAAATAGTCTGTACTACTGTAAATCCTGCCCTGTTCATAGCTACTCGCTATGCCTAGCCCTTCAAGACCCCCCCCCAACTGATGGATGAATCCCTGTATTTTTTTTTAGTCGAGGGCTTTGGGCTCAGTCAATGACCTTGTGTTGTCGCAATCCTTTGTTTTTGCTACGTTTTCTGACAATACTGCAGTGTTTCTTCAGTTTGTTTTTAATCCTAAGCTGTTACTAGTAAAAATAAGGAGAATGAGCTGGCAGTGTATTTCCAGTTTGCCCCAAATCCAATGTTTGCCAAAAGGATAATGTAACTGCTGGTGATTGATGCGAGAAAAAGGAAATATGGAAATAGCCAATTAAGTTAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_10085#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 969 fasta sequence [GTTGCTTACCATGTTTTTGCTGCTTTGTCCTTGAGTTTATGAGGAGTGTTGATTGGGGTTTCCTTTTGTTAAGAACTGCAGTTGAGTGGTCATGAATTGGAGTATGAACCTATAGGTTTCTCACTTCTGATGTTCCCATGTTTTGTATTGTATACTTACTATAGTTCATTTATGCTATTGTTTTGAACATATTTGAAAGTATGTAAACCAAATCCATAAGTCAAAGTTGAAATTTCTCTTGGAAAGACTTCCAGGAAAACATTGGTAGAACTGAAGAATAGACAGATATGGCTTCTGGTGGCATGAAGGACTTTTACCGGCAGAAGAAGAAAGGAGGTCCCACCAAAGCATCGTCATCTTCCAAGAAGAAAACACAGCATTACACTGGAGGGGCCTCTGTTGGGGCCTCAGACACTGCTCAGACATCAGCACTAATTTCTCATGGTAACCTAGATCTTAAAGATGATTTCAGTGAGCAAGAGGAGCAGTTGCGACTGTTTGATATGGACATGAAGTTTGGCCCTTGCATTGGCGTTACTCGTCTTCAGCGTTGGGAACGTGCTTCTGCCATGGGTCTTCACCCACCACCTCATCTCAGGGATCTCTTACTGAACAATACTCA-TGC-AGGCAAT--CACA-A-TAACAA-TGG-TCCCTCCC-TTGAGTGCC-TC-TGGGAGG-GC-AAAGTCTAGAACAAACAAATAGTCTGTACTACTGTAAATCCTGCACTGTTCATAGCTACTCGCTATGCCTAGCCCTTCAAACCCCACCC-CAACTGATGGATGAATCCCTGTATTTCTTCTTAGTCGAGGGCTTTGGGCTC-AGTCAATGACCTTGTGTTGTCGC-AATCCTTTGTTTCTGCTACGTTTTCTGACAATACTGCAGTGTTTCTTCAGTTTGTTCTTAATCCTAAGCTGTTACTAGTANAAAATAAGGAGAATGAGCTGGCAGTGTAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CB643949 [GTTGCTTACCATGTTTTTGCTGCTTTGTCCTTGAGTTTATGAGGAGTGTTGATTGGGGTTTCCTTTTGTTAAGAACTGCAGTTGAGTGGTCATGAATTGGAGTATGAACCTATAGGTTTCTCACTTCTGATGTTCCCATGTTTTGTATTGTATACTTACTATAGTTCATTTATGCTATTGTTTTGAACATATTTGAAAGTATGTAAACCAAATCCATAAGTCAAAGTTGAAATTTCTCTTGGAAAGACTTCCAGGAAAACATTGGTAGAACTGAAGAATAGACAGATATGGCTTCTGGTGGCATGAAGGACTTTTACCGGCAGAAGAAGAAAGGAGGTCCCACCAAAGCATCGTCATCTTCCAAGAAGAAAACACAGCATTACACTGGAGGGGCCTCTGTTGGGGCCTCAGACACTGCTCAGACATCAGCACTAATTTCTCATGGTAACCTAGATCTTAAAGATGATTTCAGTGAGCAAGAGGAGCAGTTGCGACTGTTTGATATGGACATGAAGTTTGGCCCTTGCATTGGCGTTACTCGTCTTCAGCGTTGGGAACGTGCTTCTGCCATGGGTCTTCACCCACCACCTCATCTCAGGGATCTCTTACTGAACAATACTCA TGC AGGCAAT CACA A TAACAA TGG TCCCTCCC TTGAGTGCC TC TGGGAGG GC AAAGTCTAGAACAAACAAATAGTCTGTACTACTGTAAATCCTGCACTGTTCATAGCTACTCG ] [-] EMBL CB643950 [ TATAGGTTTCTCACTTCTGATGTTCCCATGTTTTGTATTGTATACTTACTATAGTTCATTTATGCTATTGTTTTGAACATATTTGAAAGTATGTAAACCAAATCCATAAGTCAAAGTTGAAATTTCTCTTGGAAAGACTTCCAGGAAAACATTGGTAGAACTGAAGAATAGACAGATATGGCTTCTGGTGGCATGAAGGACTTTTACCGGCAGAAGAAGAAAGGAGGTCCCACCAAAGCATCGTCATCTTCCAAGAAGAAAACACAGCATTACACTGGAGGGGCCTCTGTTGGGGCCTCAGACACTGCTCAGACATCAGCACTAATTTCTCATGGTAACCTAGATCTTAAAGATGATTTCAGTGAGCAAGAGGAGCAGTTGCGACTGTTTGATATGGACATGAAGTTTGGCCCTTGCATTGGCGTTACTCGTCTTCAGCGTTGGGAACGTGCTTCTGCCATGGGTCTTCACCCACCACCTCATCTCAGGGATCTCTTACTGAACAATACTCA TGC AGGCAAT CACA A TAACAA TGG TCCCTCCC TTGAGTGCC TC TGGGAGG GC AAAGTCTAGAACAAACAAATAGTCTGTACTACTGTAAATCCTGCACTGTTCATAGCTACTCGCTATGCCTAGCCCTTCAAACCCCACCC CAACTGATGGATGAATCCCTGTATTTCTTCTTAGTCGAGGGCTTTGGGCTC AGTCAATGACCTTGTGTTGTCGC AATCCTTTGTTTCTGCTACGTTTTCTGACAATACTGCAGTGTTTCTTCAGTTTGTTCTTAATCCTAAGCT ] [+] EMBL OSS2804A [ CAGTTGCGACTGTTTGATATGGACATGAAGTTTGGCCCTTGCATTGGCGTTACTCGTCTTCAGCGTTGGGAACGTGCTTCTGCCATGGGTCTTCACCCACCACCTCATCTCAGGGATCTCTTACTGAACAATACTCA TGC AGGCAAT CACA A TAACAA TGG TCCCTCCC TTGAGTGCC TC TGGGAGG GC AAAGTCTAGAACAAACAAATAGTCTGTACTACTGTAAATCCTGCACTGTTCATAGCTACTCGCTATGCCTAGCCCTTCAAACCCCACCC CAACTGATGGATGAATCCCTGTATTTCTTCTT ] [+] EMBL AU097200 [ ACTCATTGCAAGGCAATTCCACAGATTNACAATTGGTTCCCTCCCTTTGAGTGCCNTCTTGGGAGGNGCAAAAGTCTAGAACAAACAAATAGTCTGTACTACTGTAAATCCTGCACTGTTCATAGCTACTCGCTATGCCTAGCCCTTCAAACCCCACCCNCAACTGATGGATGAATCCCTGTATTTCTTCTTAGTCGAGGGCTTTGGGCTCGAGTCAATGACCTTGTGTTGTCGCGAATCCTTTGTTTCTGCTACGTTTTCTGACAATACTGCAGTGTTTCTTCAGTTTGTTCTTAATCCTAAGCTGTTACTAGTANAAAATAAGGAGAATGAGCTGGCAGTGTAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10085#0 -----------------------------------------TTCCATTCCCATTCCTATC 19 consensus_10085#1 GTTGCTTACCATGTTTTTGCTGCTTTGTCCTTGAGTTTATGAGGAGTGTTGATTGGGGTT 60 * *** * consensus_10085#0 CCGAAAGCTCCCAAACCCCAGCCGGCGAGCGAC--ACCGCCGGGCGCGCGAGGCGGCGGC 77 consensus_10085#1 TCCTTTTGTTAAGAACTGCAGTTGAGTGGTCATGAATTGGAGTATGAACCTATAGGTTTC 120 * * *** *** * * * * * * * * ** * consensus_10085#0 TCACGAGCAGCGCCACCGAGGGCGCGAGCGGCCGGCCGGCCGGACGCCGGGGAGAGTGCC 137 consensus_10085#1 TCACTTCTGATGTTCCC-ATGTTTTGTATTGTATACTTACTATAGTTCATTTATGCTATT 179 **** * ** * * * * * * * * * * consensus_10085#0 GGTGAGTTCGCGTCTCCCCGCA-----GCGGCAGCCA---GCGAGACGCGGAGCGGCAC- 188 consensus_10085#1 GTTTTGAACATATTTGAAAGTATGTAAACCAAATCCATAAGTCAAAGTTGAAATTTCTCT 239 * * * * * * * * * * *** * * * * * * * consensus_10085#0 ---GAAGACTTCCAGGAAAACATTGGTAGAACTGAAGAATAGACAGATATGGCTTCTGGT 245 consensus_10085#1 TGGAAAGACTTCCAGGAAAACATTGGTAGAACTGAAGAATAGACAGATATGGCTTCTGGT 299 ******************************************************** consensus_10085#0 GGCATGAAGGACTTTTACCGGCAGAAGAAGAAAGGAGGTCCCACCAAAGCATCGTCATCT 305 consensus_10085#1 GGCATGAAGGACTTTTACCGGCAGAAGAAGAAAGGAGGTCCCACCAAAGCATCGTCATCT 359 ************************************************************ consensus_10085#0 TCCAAGAAGAAAACACAGCATTACACTGGAGGGGCCTCTGTTGGGGCCTCAGACACTGCT 365 consensus_10085#1 TCCAAGAAGAAAACACAGCATTACACTGGAGGGGCCTCTGTTGGGGCCTCAGACACTGCT 419 ************************************************************ consensus_10085#0 CAGACATCAGCACTAATTTCTCATGGTAACCTAGATCTTAAAGATGATTTCAGTGAGCAA 425 consensus_10085#1 CAGACATCAGCACTAATTTCTCATGGTAACCTAGATCTTAAAGATGATTTCAGTGAGCAA 479 ************************************************************ consensus_10085#0 GAGGAGCAGTTGCGACTGTTTGATATGGACATGAAGTTTGGCCCTTGCATTGGCGTTACT 485 consensus_10085#1 GAGGAGCAGTTGCGACTGTTTGATATGGACATGAAGTTTGGCCCTTGCATTGGCGTTACT 539 ************************************************************ consensus_10085#0 CGTCTTCAGCGTTGGGAACGTGCTTCTGCCATGGGTCTTCACCCACCACCTCATCTCAGG 545 consensus_10085#1 CGTCTTCAGCGTTGGGAACGTGCTTCTGCCATGGGTCTTCACCCACCACCTCATCTCAGG 599 ************************************************************ consensus_10085#0 GATCTCTTACTGAACAATACTCATGCAGGCAATCACAATAACAATGGTCCCTCCCTTGAG 605 consensus_10085#1 GATCTCTTACTGAACAATACTCATGCAGGCAATCACAATAACAATGGTCCCTCCCTTGAG 659 ************************************************************ consensus_10085#0 TGCCTCTGGGAGGGCAAAGTCTAGAACAAACAAATAGTCTGTACTACTGTAAATCCTGCA 665 consensus_10085#1 TGCCTCTGGGAGGGCAAAGTCTAGAACAAACAAATAGTCTGTACTACTGTAAATCCTGCA 719 ************************************************************ consensus_10085#0 CTGTTCATAGCTACTCGCTATGCCTAGCCCTTCAAACCCCACCCCAACTGATGGATGAAT 725 consensus_10085#1 CTGTTCATAGCTACTCGCTATGCCTAGCCCTTCAAACCCCACCCCAACTGATGGATGAAT 779 ************************************************************ consensus_10085#0 CCCTGTATTTCTTCTTAGTCGAGGGCTTTGGGCTCAGTCAATGACCTTGTGTTGTCGCAA 785 consensus_10085#1 CCCTGTATTTCTTCTTAGTCGAGGGCTTTGGGCTCAGTCAATGACCTTGTGTTGTCGCAA 839 ************************************************************ consensus_10085#0 TCCTTTGTTTCTGCTACGTTTTCTGACAATACTGCAGTGTTTCTTCAGTTTGTTCTTAAT 845 consensus_10085#1 TCCTTTGTTTCTGCTACGTTTTCTGACAATACTGCAGTGTTTCTTCAGTTTGTTCTTAAT 899 ************************************************************ consensus_10085#0 CCTAAGCTGTTACTAGTAAAAA-TAAGGAGAATGAGCTGGCAGTGTATCTCCAGTTTGCC 904 consensus_10085#1 CCTAAGCTGTTACTAGTANAAAATAAGGAGAATGAGCTGGCAGTGTAAAAAAAAAAAAAA 959 ****************** *** ************************ * consensus_10085#0 CCAAATCCAATGTTTGCCAAAAGGATAATGTAACTGCTGGTGATTGATGCGAGAAAAAGG 964 consensus_10085#1 AAAAAAAAAA-------------------------------------------------- 969 *** ** consensus_10085#0 AAATATGGAAATAGCCAATTAAGTTAAAAAAAAAAAAAAAAAAAA 1009 consensus_10085#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||