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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10086#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1321 fasta sequence
[TTCTCATTCCTCGCGGGGAGGGGCGGCGCCGACGCCTCATCGACTAGTTCACTCCATCTCCATCTCCATCTCCATCTCCATCTACATATACGGCCGCTTCCAACTGCAATCTCCTGCCTGCCCAGCGATTCTTCCCACGATTTCCTTTCCTGCTTTTCTCATCCCTTTTGTTTCTTCACTCCGGCTCACCGCGCGAACCAATCTTCTGCCTTCACACAACCAATTCATCAAGCAGATCGAGATGGAGTGCGAGAGCAACTACAGCAAGGAGCAGAGGCTCAACGGCGACAGCCTCGTCTTCGACCTTGATGACACGCTGTATCCGGTGACCTCCGGCATTGGAGCCGACGTCGTAAGGAACATCCAAGCTTATATGATCGAAAAGCTTGGTGTGGAAGAGAGCATCAGTTTGGAGCTATGCGTCCTCCTCTACAAGCAGTATGGAACTACCATGGCCGGTTTGAGGGCTGTTGGGTACCAGTTTGATTATGACGACTTCCACAGCTATGTTCATGG-AAGGTTGGCTTATGAGAAAATTAAGCCTGATCCAGTACTTAGGAACATTCTCCTAAGCTTGCCAATCCGCAAAGTTGTCTTCACAAATGGTGACAGAATTCATGCTTCAAGGGCCCTCAAGAGGCTAGGAATAGAAGATTGCTTTGAAAGAGTTGTGTGCTTTGAGACACTGAACCCAACATCATCCTCTCTTTCGGCAGCTGGTCAGGTTGAAATTTTTGATATAATGAAGCATCTGGCTCATCCAGAGCCTGGGGTTGAACTACCAAAGTCGCCAATCCTGTGCAAGCCAAATATAGATGCCATGCGGCAAGCTCTCAAGGTTGCCTCCATCAATCCGAAGACATCGATATTGTTTGATGACAGCGCCAGGAACAT-CCAGGCTGCGAAGCTAATAGGAATGTATACTGTCCTGGTTGGAACTTCTGAAAGAATAAAGGGTGCTGACCATGCGTTGGAAAGCCTTCACAACATGAAGGAAGCATTGCCTGAGCTGTGGGATGAAGCTGTGAAGGATGAGGATGTCAGGAAGTCAAGCAAAGTCGGAATTGAGACATCTGTGATCGCTTAAAACTCCCATGAATGTTTCTGATGGAGAACAGCATGAGATGAGTGGATCATTTTTCAGAGCTCATCTCTGCACTTTCTTATGTCTGAAAGTAGATGTGCTAATTTAGGGGAGATTTTACTCTTCTTCATGTACTGTGTGAGTGTGTGACTGCCTGTAATAAATAAATAAATAAATGCCATCTATGAACTGACAATACAATTCCTGGTGATGTTTTGTTCTAAAAAAAAAAANAAA]
[+] EMBL AK103593 [TTCTCATTCCTCGCGGGGAGGGGCGGCGCCGACGCCTCATCGACTAGTTCACTCCATCTCCATCTCCATCTCCATCTCCATCTACATATACGGCCGCTTCCAACTGCAATCTCCTGCCTGCCCAGCGATTCTTCCCACGATTTCCTTTCCTGCTTTTCTCATCCCTTTTGTTTCTTCACTCCGGCTCACCGCGCGAACCAATCTTCTGCCTTCACACAACCAATTCATCAAGCAGATCGAGATGGAGTGCGAGAGCAACTACAGCAAGGAGCAGAGGCTCAACGGCGACAGCCTCGTCTTCGACCTTGATGACACGCTGTATCCGGTGACCTCCGGCATTGGAGCCGACGTCGTAAGGAACATCCAAGCTTATATGATCGAAAAGCTTGGTGTGGAAGAGAGCATCAGTTTGGAGCTATGCGTCCTCCTCTACAAGCAGTATGGAACTACCATGGCCGGTTTGAGGGCTGTTGGGTACCAGTTTGATTATGACGACTTCCACAGCTATGTTCATGG AAGGTTGGCTTATGAGAAAATTAAGCCTGATCCAGTACTTAGGAACATTCTCCTAAGCTTGCCAATCCGCAAAGTTGTCTTCACAAATGGTGACAGAATTCATGCTTCAAGGGCCCTCAAGAGGCTAGGAATAGAAGATTGCTTTGAAAGAGTTGTGTGCTTTGAGACACTGAACCCAACATCATCCTCTCTTTCGGCAGCTGGTCAGGTTGAAATTTTTGATATAATGAAGCATCTGGCTCATCCAGAGCCTGGGGTTGAACTACCAAAGTCGCCAATCCTGTGCAAGCCAAATATAGATGCCATGCGGCAAGCTCTCAAGGTTGCCTCCATCAATCCGAAGACATCGATATTGTTTGATGACAGCGCCAGGAACAT CCAGGCTGCGAAGCTAATAGGAATGTATACTGTCCTGGTTGGAACTTCTGAAAGAATAAAGGGTGCTGACCATGCGTTGGAAAGCCTTCACAACATGAAGGAAGCATTGCCTGAGCTGTGGGATGAAGCTGTGAAGGATGAGGATGTCAGGAAGTCAAGCAAAGTCGGAATTGAGACATCTGTGATCGCTTAAAACTCCCATGAATGTTTCTGATGGAGAACAGCATGAGATGAGTGGATCATTTTTCAGAGCTCATCTCTGCACTTTCTTATGTCTGAAAGTAGATGTGCTAATTTAGGGGAGATTTTACTCTTCTTCATGTACTGTGTGAGTGTGTGACTGCCTGTAATAAATAAATAAATAAATGCCATCTATGAACTGACAATACA ]
[+] EMBL C74526 [ GCGGGGAGGGGCGGCG CGACG CTCATCGACTAGTTCACTCCATCTCCATCTCCATCTCCATCTCCATCTACATATACGGCCGCTTCCAACTGCAATCTCCTGCCTGCCCAGCGATTCTTCCCACGATTTCCTTTCCTGCTTTTCTCATCCCTTTTGTTTCTTCACTCCGGCTCACCGCGCGAACCAATCTTCTGCCTTCACACAACCAATTCATCAAGCAGATCGAGATGGAGTTCGAGA NAACTACAGC ]
[+] EMBL CF321370 [ GTTCACTCCATCTCCATCTCCATCTCCATCTCCATCTACATATACGGCCGCTTCCAACTGCAATCTCCTGCCTGCCCAGCGATTCTTCCCACGATTTCCTTTCCTGCTTTTCTCATCCCTTTTGTTTCTTCACTCCGGCTCACCGCGCGAACCAATCTTCTCCCTTCACACAACCAATTCATCAAGCAGATCGAGATGGAGTGCGAGAGCAACTACAGCAAGGAGCAGAGGCTCAACGGCGACAGCCTCGTCTTCGACCTTGATGACACGCTGTATCCGGTGACCTCCGGCATTGGAGCCGACGTCGTAAGGAACATCCAAGCTTATATGATCGAAAAGCTTGGTGTGGAAGAGAGCATCAGTTTGGAGCTATGCGTCCTCCTCTACAAGCAGTATGGAACTACCATGGCCGGTTTGAGGGCTGTTGGGTACCAGTTTGATTATGACGACTTCCACAGCTATGTTCATGGAAAGGTTGGCTTATGAGAAAATTAAGCCTGATCCAGTACTTAGGAACATTCT ]
[+] EMBL OS0112A [ CTTTCCTGCTTTTCTCATCCCTTTTGTTTCTTCACNNCNGCTCACCGCGCGAACCAATCTTCTGCCTTCACACAACCAATTCATCAAGCAGATCGAGATGGAGTGCGAGA CAACTACAGCAAGGAGCAGAGGCTCAACGGCGACA CCTCGTCTTCGACCTTGATGACACGCTGTATCCGGTGACCTNCGGCATTGGAGCCGACGTCGTAAGGAACATCCAAGCTTATATGATCGAAAAGCTTGGTGTGGAAGAGAGCATCAGTTTGGAGCTATGCGTCCTNCTCTACAAGCAGTATGG ACTACCATGG ]
[+] EMBL AU166135 [ CTCAAGGTTGCCTCCATCAATCCGAAGACATCGATATTGTTTGATGACAGCGCCAGGAACATCCCAGGCTGCGAAGCTAATAGGAATGTATACTGTCCTGGTTGGAACTTCTGAAAGAATAAAGGNTGCTGACCATNCGTTGGAAAGCCTTCACAACATGAAGGAAGCATTGCCTNAGCTGTGGGATGAAGCTNTGAAGGATGAGGATNTCAGGAAGTCAAGCAAAGTCGGAATTGAGACATCTGTGATCGCTTAAAACTCCCATGAATGTTTCTGATGGAGAACAGCATGAGATGAGTGGATCATTTTTCAGAGCTCATCTCTGCACTTTCTTATGTCTGAAAGTAGATGTGCTAATTTAGGGGAGATTTTACTCTTCTTCATGTACTGTGTGAGTGTGTGACTGCCTGTAATAAATAAATAAATAAATGCCATCTATGAACTGACAATACAATTCCTGGTGATGTTTTGTTCTAAAAAAAAAAANAAA]
[+] EMBL C97914 [ ATTGTTTGATGACAGCGCCAGGAACAT CCAGGCTGCGAAGCTNATAGGAATGTATACTGTCCTGGTTGGAACTTCTGAAAGAATAAAGGGTGCTGACCATGCGTTGGAAAGCCTTCACAACATGAAGGAAGCATTGCCTGAGCTGTGGGATGAAGCTGTGAAGGATGAGGATGTCAGGAAGTCAAGCAAAGTCGGAATTGAGACATCTGTGATCGCTTAAAACTCCCATGAATGTTTCTGATGGAGAACAGCATGAGATGAGTGGATCATTTTTCAGAGCTCATCTCTGCACTTTCTTATGTCTGAAAGTAGATGTGCTAATTTAGGGGAGATTTTACTCTTCTTCATGTACTGTGTGAGTGTGTGACTGCCTGTAATAAATAAATAAATAAATGCCATCTATGAACTGACAATACAATTCCTGGTGATGTTTTGTTCTAAAAAA ]
consensusID : consensus_10086#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence
[AATTTTTGATATAATGAAGCATCTGGCTCATCCAGAGCCTGGGGTTGAACTACCAAAGTCGCCAATCCTGTGCAAGCCAAATATAGATGCCATGCGGCAGGCTCTCAAGGTTGCCTCCATCAATCCGAAGACATCGATATTGTTTGATGACAGCGCCAGGAACATCCAGGCTGCGAAGCTAATAGGAATGTATACTGTCCTGGTTGGAACTTCTGAAAGAATAAAGGGTGCTGCCCATGCGTTGGAAAGCCTTCCCAACATGAAGGAAGCATTGCCTGAGCTGTGGGATGAAGCTGTGAAGGATGAGGATGTCAGGAAGTCAAGCAAAGTCGGAATTGAGACATCTGTGATCGCTTAAAACTCCCATGAATGTTTCTGATGGAGACCAGCATGAGATGAGTGGATCATTTTTCAGAGCTCATCTCTGCACTTTCTTATGTCTGAAAGTAGATGTGCTAATTTAGGGGAGATTTTACTCTTCTTCATGTACTGTGTGAGTGTGTGACTGCCTGTAATAAATAAATAAATAAATGCCATTTATGAACTGCCAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF321371 [AATTTTTGATATAATGAAGCATCTGGCTCATCCAGAGCCTGGGGTTGAACTACCAAAGTCGCCAATCCTGTGCAAGCCAAATATAGATGCCATGCGGCAGGCTCTCAAGGTTGCCTCCATCAATCCGAAGACATCGATATTGTTTGATGACAGCGCCAGGAACATCCAGGCTGCGAAGCTAATAGGAATGTATACTGTCCTGGTTGGAACTTCTGAAAGAATAAAGGGTGCTGCCCATGCGTTGGAAAGCCTTCCCAACATGAAGGAAGCATTGCCTGAGCTGTGGGATGAAGCTGTGAAGGATGAGGATGTCAGGAAGTCAAGCAAAGTCGGAATTGAGACATCTGTGATCGCTTAAAACTCCCATGAATGTTTCTGATGGAGACCAGCATGAGATGAGTGGATCATTTTTCAGAGCTCATCTCTGCACTTTCTTATGTCTGAAAGTAGATGTGCTAATTTAGGGGAGATTTTACTCTTCTTCATGTACTGTGTGAGTGTGTGACTGCCTGTAATAAATAAATAAATAAATGCCATTTATGAACTGCCAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10086#0 TTCTCATTCCTCGCGGGGAGGGGCGGCGCCGACGCCTCATCGACTAGTTCACTCCATCTC 60
consensus_10086#1 ------------------------------------------------------------
consensus_10086#0 CATCTCCATCTCCATCTCCATCTACATATACGGCCGCTTCCAACTGCAATCTCCTGCCTG 120
consensus_10086#1 ------------------------------------------------------------
consensus_10086#0 CCCAGCGATTCTTCCCACGATTTCCTTTCCTGCTTTTCTCATCCCTTTTGTTTCTTCACT 180
consensus_10086#1 ------------------------------------------------------------
consensus_10086#0 CCGGCTCACCGCGCGAACCAATCTTCTGCCTTCACACAACCAATTCATCAAGCAGATCGA 240
consensus_10086#1 ------------------------------------------------------------
consensus_10086#0 GATGGAGTGCGAGAGCAACTACAGCAAGGAGCAGAGGCTCAACGGCGACAGCCTCGTCTT 300
consensus_10086#1 ------------------------------------------------------------
consensus_10086#0 CGACCTTGATGACACGCTGTATCCGGTGACCTCCGGCATTGGAGCCGACGTCGTAAGGAA 360
consensus_10086#1 ------------------------------------------------------------
consensus_10086#0 CATCCAAGCTTATATGATCGAAAAGCTTGGTGTGGAAGAGAGCATCAGTTTGGAGCTATG 420
consensus_10086#1 ------------------------------------------------------------
consensus_10086#0 CGTCCTCCTCTACAAGCAGTATGGAACTACCATGGCCGGTTTGAGGGCTGTTGGGTACCA 480
consensus_10086#1 ------------------------------------------------------------
consensus_10086#0 GTTTGATTATGACGACTTCCACAGCTATGTTCATGGAAGGTTGGCTTATGAGAAAATTAA 540
consensus_10086#1 ------------------------------------------------------------
consensus_10086#0 GCCTGATCCAGTACTTAGGAACATTCTCCTAAGCTTGCCAATCCGCAAAGTTGTCTTCAC 600
consensus_10086#1 ------------------------------------------------------------
consensus_10086#0 AAATGGTGACAGAATTCATGCTTCAAGGGCCCTCAAGAGGCTAGGAATAGAAGATTGCTT 660
consensus_10086#1 ------------------------------------------------------------
consensus_10086#0 TGAAAGAGTTGTGTGCTTTGAGACACTGAACCCAACATCATCCTCTCTTTCGGCAGCTGG 720
consensus_10086#1 ------------------------------------------------------------
consensus_10086#0 TCAGGTTGAAATTTTTGATATAATGAAGCATCTGGCTCATCCAGAGCCTGGGGTTGAACT 780
consensus_10086#1 ---------AATTTTTGATATAATGAAGCATCTGGCTCATCCAGAGCCTGGGGTTGAACT 51
***************************************************
consensus_10086#0 ACCAAAGTCGCCAATCCTGTGCAAGCCAAATATAGATGCCATGCGGCAAGCTCTCAAGGT 840
consensus_10086#1 ACCAAAGTCGCCAATCCTGTGCAAGCCAAATATAGATGCCATGCGGCAGGCTCTCAAGGT 111
************************************************ ***********
consensus_10086#0 TGCCTCCATCAATCCGAAGACATCGATATTGTTTGATGACAGCGCCAGGAACATCCAGGC 900
consensus_10086#1 TGCCTCCATCAATCCGAAGACATCGATATTGTTTGATGACAGCGCCAGGAACATCCAGGC 171
************************************************************
consensus_10086#0 TGCGAAGCTAATAGGAATGTATACTGTCCTGGTTGGAACTTCTGAAAGAATAAAGGGTGC 960
consensus_10086#1 TGCGAAGCTAATAGGAATGTATACTGTCCTGGTTGGAACTTCTGAAAGAATAAAGGGTGC 231
************************************************************
consensus_10086#0 TGACCATGCGTTGGAAAGCCTTCACAACATGAAGGAAGCATTGCCTGAGCTGTGGGATGA 1020
consensus_10086#1 TGCCCATGCGTTGGAAAGCCTTCCCAACATGAAGGAAGCATTGCCTGAGCTGTGGGATGA 291
** ******************** ************************************
consensus_10086#0 AGCTGTGAAGGATGAGGATGTCAGGAAGTCAAGCAAAGTCGGAATTGAGACATCTGTGAT 1080
consensus_10086#1 AGCTGTGAAGGATGAGGATGTCAGGAAGTCAAGCAAAGTCGGAATTGAGACATCTGTGAT 351
************************************************************
consensus_10086#0 CGCTTAAAACTCCCATGAATGTTTCTGATGGAGAACAGCATGAGATGAGTGGATCATTTT 1140
consensus_10086#1 CGCTTAAAACTCCCATGAATGTTTCTGATGGAGACCAGCATGAGATGAGTGGATCATTTT 411
********************************** *************************
consensus_10086#0 TCAGAGCTCATCTCTGCACTTTCTTATGTCTGAAAGTAGATGTGCTAATTTAGGGGAGAT 1200
consensus_10086#1 TCAGAGCTCATCTCTGCACTTTCTTATGTCTGAAAGTAGATGTGCTAATTTAGGGGAGAT 471
************************************************************
consensus_10086#0 TTTACTCTTCTTCATGTACTGTGTGAGTGTGTGACTGCCTGTAATAAATAAATAAATAAA 1260
consensus_10086#1 TTTACTCTTCTTCATGTACTGTGTGAGTGTGTGACTGCCTGTAATAAATAAATAAATAAA 531
************************************************************
consensus_10086#0 TGCCATCTATGAACTGACAATACAATTCCTGGTGATGTTTTGTTCTAAAAAAAAAAANAA 1320
consensus_10086#1 TGCCATTTATGAACTGCCAAAAAAA---------------------AAAAAAAAAAAA-- 568
****** ********* *** * ** ***********
consensus_10086#0 A 1321
consensus_10086#1 -
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||