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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10087#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1669 fasta sequence
[CCCGCCCACCGACGGCCGACGGCCGACGGCGAACCCGCTCCTCCGCCTCCGCCGCTGCCTGAGCCAGCCAGCCATTGGAGTGGAGGATCCGGCCTCTGCTCCCCTCGCAAACCCCCGCCACTCCTCACCCGCACCCGATCCGATCCAGCCCCGCATCCCCCGATCCCTCCCACGGGACCAAGATTCGGATCCG-CCTCGCCGTGATGGATCCCGACGAGAACCCCACGCCGCCGCCGCCATACCAGGAAGCGGAGGCTGCGGTGCCGGTCGACGAGCAGCCTCCGCCCCCCGTAGAGGAAGAGCAGGCGGAGGCGGCACGCCAGGAGTCAGCTGCGCCGGTTGAACAAGATGCGGCGGCGGCAGAGGGAGGAGGAGGCGATCGCGCCGCGGGCGGGGAGCGGAGCCGCGAGGAGCTGGAGCGGGTGGTGATGGAGCTCGGCTTCCAGAACGACTACCTCAAGTCCCAGATCGCGGCCGCCGAGGGTGGGAGTGGGGCGGCGGAGTCGGAGCTCGTGAAGGGGTTGAAGGAGCAGGTGGAGAGGCTGAGGAAGGAGGTGGAGGAGCACAAGCAGACGCAGAAGGCCACCGAGGCCGCCCTCGAGCACGTCAATGTCGCCTACGCCGAGGCGGACGCCAAGGTCCAGGACCTCACCGCCAAGCTCACCCAAGCTCAGCAGAAAATGGATAAAGAACTAAAAGAAAGAGATGAAAAATATGTTGAGCTGGATACCAAGTTCCAGAGGCTTCACAAGCGTGCTAAACAACGCATACAGGATATACAGAAGGAAAAAGATGACATGGAAGCTCGCTTTAATGAAATTAACCAGAAGGCTGAGCAGGCTTCTTCTCTGCAGTCAGCAGCACAACAGGAACTGGAACGTGCTCGTCAGCAGGCTAGTGAGGCTTTACGGTCAATGGATGCTGAAAGGCAGCAATTGCGAACGGTGAACAGCAAGTTAAGAACTAATCTTGATGAGGCACGTGTTGCCTTGGAGGCCAGGAATAATGTCCTTGAGAAGTTGCGACAATCGATGTTTGAAAAAGAACAGTTGTTAGAGCAAACCCAAGCATCACTTCAATCTGCAGAAGAAAAGAGAAATGCATCAATTGCGGAGCTTACTGCTAAGCATCAGAAGCAATTAGAAAGCTTGGAGGCACAGCTAACTGAGGTTTCTGCGGAGAGGACAAAAGCATCTGAAACGATCCAATCTCTTCAGATGTTGCTTGTGGAGAAAGATTCAGAAATAGCTGAAATTGAAGCAGCTTCTACTGGGGAAGCTGCTCGAATTAGAGCTGCCATGGAGGAGCTTAAAGGCGAGCTTGCTCATCTGAAGGACCAACATGAAAAAGAAAGGCAAAATTGGGAAACTACTTGTGAATCGCTTAGGACAAAATTGGAAGCATCAGAAAGTGCATGCCATATATCTGTGATAGAATCTACTAAAGTTAAAAGTCAACTGGAGTTGGAGTTATCAAAGCAAAACCAATTACTACAAACCAAAGACTCTGATCTATTGGCTGCAAAAGACGAGATTAGTCGGCTGGAAAGCGAGTTTTCTGCATATAAGGTCCGCGCACATGCACTTCTGCAAAAGAAGGATGCTGAGCTGAACACAGCTAAAAACTCAGATTTGATTAAAGCACATGAAGAAGCAATAAGGGAAGCTGA]
[+] EMBL AK066964 [CCCGCCCACCGACGGCCGACGGCCGACGGCGAACCCGCTCCTCCGCCTCCGCCGCTGCCTGAGCCAGCCAGCCATTGGAGTGGAGGATCCGGCCTCTGCTCCCCTCGCAAACCCCCGCCACTCCTCACCCGCACCCGATCCGATCCAGCCCCGCATCCCCCGATCCCTCCCACGGGACCAAGATTCGGATCCG CCTCGCCGTGATGGATCCCGACGAGAACCCCACGCCGCCGCCGCCATACCAGGAAGCGGAGGCTGCGGTGCCGGTCGACGAGCAGCCTCCGCCCCCCGTAGAGGAAGAGCAGGCGGAGGCGGCACGCCAGGAGTCAGCTGCGCCGGTTGAACAAGATGCGGCGGCGGCAGAGGGAGGAGGAGGCGATCGCGCCGCGGGCGGGGAGCGGAGCCGCGAGGAGCTGGAGCGGGTGGTGATGGAGCTCGGCTTCCAGAACGACTACCTCAAGTCCCAGATCGCGGCCGCCGAGGGTGGGAGTGGGGCGGCGGAGTCGGAGCTCGTGAAGGGGTTGAAGGAGCAGGTGGAGAGGCTGAGGAAGGAGGTGGAGGAGCACAAGCAGACGCAGAAGGCCACCGAGGCCGCCCTCGAGCACGTCAATGTCGCCTACGCCGAGGCGGACGCCAAGGTCCAGGACCTCACCGCCAAGCTCACCCAAGCTCAGCAGAAAATGGATAAAGAACTAAAAGAAAGAGATGAAAAATATGTTGAGCTGGATACCAAGTTCCAGAGGCTTCACAAGCGTGCTAAACAACGCATACAGGATATACAGAAGGAAAAAGATGACATGGAAGCTCGCTTTAATGAAATTAACCAGAAGGCTGAGCAGGCTTCTTCTCTGCAGTCAGCAGCACAACAGGAACTGGAACGTGCTCGTCAGCAGGCTAGTGAGGCTTTACGGTCAATGGATGCTGAAAGGCAGCAATTGCGAACGGTGAACAGCAAGTTAAGAACTAATCTTGATGAGGCACGTGTTGCCTTGGAGGCCAGGAATAATGTCCTTGAGAAGTTGCGACAATCGATGTTTGAAAAAGAACAGTTGTTAGAGCAAACCCAAGCATCACTTCAATCTGCAGAAGAAAAGAGAAATGCATCAATTGCGGAGCTTACTGCTAAGCATCAGAAGCAATTAGAAAGCTTGGGGGCACAGCTAACTGAGGTTTCTGCGGAGAGGACAAAAGCATCTGAAACGATCCAATCTCTTCAGATGTTGCTTGTGGAGAAAGATTCAGAAATAGCTGAAATTGAAGCAGCTTCTACTGGGGAAGCTGCTCGAATTAGAGCTGCCATGGAGGAGCTTAAAGGCGAGCTTGCTCATCTGAAGGACCAACATGAAAAAGAAAGGCAAAATTGGGAAACTACTTGTGAATCGCTTAGGACAAAATTGGAAGCATCAGAAAGTGCATGCCATATATCTGTGATAGAATCTACTAAAGTTAAAAGTCAACTGGAGTTGGAGTTATCAAAGCAAAACCAATTACTACAAACCAAAGACTCTGATCTATTGGCTGCAAAAGACGAGATTAGTCGGCTGGAAAGCGAGTTTTCTGCATATAAGGTCCGCGCACATGCACTTCTGCAAAAGAAGGATGCTGAGCTGAACACAGCTAAAAACTCAGATTTGATTAAAGCACATGAAGAAGCAATAAGGGAAGCTGA]
[+] EMBL CB627799 [ acccGATCCGATCTCGCCGTGATGGATCCCGACGAGAACCCCACGCCGCCGCCGCCATACCAGGAAGCGGAGGCTGCGGTGCCGGTCGACGAGCAGCCTCCGCCCCCCGTAGAGGAAGAGCAGGCGGAGGCGGCACGCCAGGAGTCAGCTGCGCCGGTTGAACAAGATGCGGCGGCGGCAGAGGGAGGAGGAGGCGATCGCGCCGCGGGCGGGGAGCGGAGCCGCGAGGAGCTGGAGCGGGTGGTGATGGAGCTCGGCTTCCAGAACGACTACCTCAAGTCCCAGATCGCGGCCGCCGAGGGTGGGAGTGGGGCGGCGGAGTCGGAGCTCGTGAAGGGGTTGAAGGAGCAGGT ]
[+] EMBL CB668933 [ ctttGAAGGAGGTGGAGGAGCACAAGCAGACGCAGAAGGCCACCGAGGCCGCCCTCGAGCACGTCAATGTCGCCTACGCCGAGGCGGACGCCAAGGTCCAGGACCTCACCGCCAAGCTCACCCAAGCTCAGCAGAAAATGGATAAAGAACTAAAAGAAAGAGATGAAAAATATGTTGAGCTGGATACCAAGTTCCAGAGGCTTCACAAGCGTGCTAAACAACGCATACAGGATATACAGAAGGAAAAAGATGACATGGAAGCTCGCTTTAATGAAATTAACCAGAAGGCTGAGCAGGCTTCTTCTCTGCAGTCAGCAGCACAACAGGAACTGGAACGTGCTCGTCAGCAGGCTAGTGAGGCTTTACGGTCAATGGATGCTGAAAGGCAGCAATTGCGAACGGTGAACAGCAAGTTAAGAACTAATCTTGATGAGGCACGTGTTGCCTTGGAGGCCAGGAATAATGTCCTTGAGAAGTTGCGACAATCGATGTTTGAAAAAGAACAGTTGTTAGAGCAAACCCAAGCATCACTTCAATCTGCAGAAGAAAAGAGAAATGCATCAATTGCGGAGCTTACTGCTAAGCATCAGAAGCAATTAGAAAGCTTGGAGGCACAGCTAACTGAGGTTTCTGCGGAGAGGACAAAAGCATCTGAAACGATCCAATCTCTTCAGATGTTGCTTGTGGAGAAAGATTCAGAAATAGCTGAAATTGAAGCAGCTTCTACTGGGGAA ]
[+] EMBL CB000199 [ GACGCAGAAGGCCACCGAGGCCGCCCTCGAGCCCTTCAAAGTCGCCTACGCCGAGGCGGACGCCAAGGGCCAGGACCTCACCGCCAAGCTCACCCAAGCTCAGCAGAAAATGGATAAAGAACTAAAAGAAAGAGATGAAAAATATGTTGAGCTGGATACCAAGTTCCAGAGGCTTCACAAGCGTGCTAAACAACGCATACAGGATATACAGAAGGAAAAAGATGACATGGAAGCTCGCTTTAATGAAATTAACCAGAAGGCTGAGCAGGCTTCTTCTCTGCAGTCAGCAGCACAACAGGAACTGGAACGTGCTCGTCAGCAGGCTAGTGAGGCTTTACGGTCAATGGATGCTGAAAGGCAGCAATTGCGAACGGTGAACAGCAAGTTAAGAACTAATCTTGATGAGGCACGTGTTGCCTTGGAGGCCAGGAATAATGTCCTTGAGAAGTTGCGACAATCGATGTTTGAAAAAGAACAGTTGTTAGAGCAAACCCAAGCATCACTTCAATCTGCAGAAGAAAAGAGAAATGCATCAATTGCGGAGCTTACTGCTAAGCATCAGAAGCAATTAGAAAGCTTGGAGGCACAGCTAACTGAGGTTTCTGCGGAGAGGACAAAAGCATCTGAAACGATCCAATCTCTTCAGATGTTGCTTGTGGAGAAAGATTCAGAAATAGCTGAAATTGAAGCAGCTTCTACTGGGGAAGCTGCTCGAATTAGAGCTGCCATGGAGGAGCTTAAAGGCGAGCTTGCTCATCTGAAGGACC ]
[+] EMBL AY224523 [ GAACTAAAAGAAAGAGATGAAAAATATGTTGAGCTGGATACCAAGTTCCAGAGGCTTCACAAGCGTGCTAAACAACGCATACAGGATATACAGAAGGAAAAAGATGACATGGAAGCTCGCTTTAATGAAATTAACCAGAAGGCTGAGCAGGCTTCTTCTCTGCAGTCAGCAGCACAACAGGAACTGGAACGTGCTCGTCAGCAGGCTAGTGAGGCTTTACGGTCAATGGATGCTGAAAGGCAGCAATTGCGAACGGTGAACAGCAAGTTAAGAACTAATCTTGATGAGGCACGTGTTGCCTTGGAGGCCAGGAATAATGTCCTTGAGAAGTTGCGACAATCGATGTTTGAAAAAGAACAGTTGTTAGAGCAAACCCAAGCATCACTTCAATCTGCAGAAGAAAAGAGAAATGCATCAATTGCGGAGCTTACTGCTAAGCATCAGAAGCAATTAGAAAGCTTGGAGGCACAGCTAACTGAGGTTTCTGCGGAGAGGACAAAAGCATCTGAAACGATCCAATCTCTTCAGATGTTGCTTGTGGAGAAAGATTCAGAAATAGCTGAAATTGAAGCAGCTTCTACTGGGGAAGCTGCTCGAATTAGAGCTGCCATGGAGGAGCTTAAAGGCGAGCTTGCTCATCTGAAGGACCAACATGAAAAAGAAAGGCAAAATTGGGAAACTACTTGTGAATCGCTTAGGACAAAATTGGAAGCATCAGAAAGTGCATGCCATATATCTGTGATAGAATCTACTAAAGTTAAAAGTCAACTGGAGTTGGAGTTATCAAAGCAAAACCAATTACTACAAACCAAAGACTCTGATCTATTGGCTGCAAAAGACGAGATTAGTCGGCTGGAAAGCGAGTTTTCTGCATATAAGGTCCGCGCACATGCACTTCTGCAAAAGAAGGATGCTGAGCTGAACACAGCTAAAAACTCAGATTTGATTAAAGCACATGAAGAAGCAATAAGGGAAGCTGA]
consensusID : consensus_10087#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 537 fasta sequence
[TATCTTGAAGTGATGCTTGGGGGCACAGCTAACTGACGTTTCTGCGGAGAGGACAATAGCATCTGAAACGATCCAATCTCTTCACATGTTGCTTGTGGAGAAAGATTCAGAAATAGCTGAAATTGAAGCAGCTTCTACTGGGGAAGCTGCTCCAATTAAAGCTGCCATGGAGGAGCTTAAAGGCGAGCTTGCTCATCTGAAGGACCAACATGAAAAAGAAAGGCAAAATTGGGAAACTACTTGTGAATCGCTTAGGACAAAATTGGAAGCATCAGAAAGTGCATGCCATATATCTGTGATAGAATCTACTAAAGTTAAAAGTCAACTGGAGTTGGAGTTATCAAAGCAAAACCAATTACTACAAACCAAAGACTCTGATCTATTGGCTGCAAAAGACGAGATTAGTCGGCTGGAAAGCGAGTTTTCTGCATATAAGGTCCGCGCACATGCACTTCTGCAAAAGAAGGATGCTGAGCTGAACACAGCTAAAAACTCAGATTTGATTAAAGCACATGAAGAAGCAATAAGGGAAGCTGA]
[+] EMBL CB683260 [TATCTTGAAGTGATGCTTGGGGGCACAGCTAACTGACGTTTCTGCGGAGAGGACAATAGCATCTGAAACGATCCAATCTCTTCACATGTTGCTTGTGGAGAAAGATTCAGAAATAGCTGAAATTGAAGCAGCTTCTACTGGGGAAGCTGCTCCAATTAAAGCTGCCATGGAGGAGCTTAAAGGCGAGCTTGCTCATCTGAAGGACCAACATGAAAAAGAAAGGCAAAATTGGGAAACTACTTGTGAATCGCTTAGGACAAAATTGGAAGCATCAGAAAGTGCATGCCATATATCTGTGATAGAATCTACTAAAGTTAAAAGTCAACTGGAGTTGGAGTTATCAAAGCAAAACCAATTACTACAAACCAAAGACTCTGATCTATTGGCTGCAAAAGACGAGATTAGTCGGCTGGAAAGCGAGTTTTCTGCATATAAGGTCCGCGCACATGCACTTCTGCAAAAGAAGGATGCTGAGCTGAACACAGCTAAAAACTCAGATTTGATTAAAGCACATGAAGAAGCAATAAGGGAAGCTGA]
[+] EMBL OSC105481 [ ATTGGCTGCAAAAGACGAGATTAGTCGGCTGGAAAGCGAGTTTTCTGCATATAAGGTCCGCGCACATGCACTTCTGCAAAAGAAGGATGCTGANCTGAACACAGCTAAAAACTCAGATTTGATTAAAGCACATGAAGAAGCAATAAGGGAAGCTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10087#0 CCCGCCCACCGACGGCCGACGGCCGACGGCGAACCCGCTCCTCCGCCTCCGCCGCTGCCT 60
consensus_10087#1 ------------------------------------------------------------
consensus_10087#0 GAGCCAGCCAGCCATTGGAGTGGAGGATCCGGCCTCTGCTCCCCTCGCAAACCCCCGCCA 120
consensus_10087#1 ------------------------------------------------------------
consensus_10087#0 CTCCTCACCCGCACCCGATCCGATCCAGCCCCGCATCCCCCGATCCCTCCCACGGGACCA 180
consensus_10087#1 ------------------------------------------------------------
consensus_10087#0 AGATTCGGATCCGCCTCGCCGTGATGGATCCCGACGAGAACCCCACGCCGCCGCCGCCAT 240
consensus_10087#1 ------------------------------------------------------------
consensus_10087#0 ACCAGGAAGCGGAGGCTGCGGTGCCGGTCGACGAGCAGCCTCCGCCCCCCGTAGAGGAAG 300
consensus_10087#1 ------------------------------------------------------------
consensus_10087#0 AGCAGGCGGAGGCGGCACGCCAGGAGTCAGCTGCGCCGGTTGAACAAGATGCGGCGGCGG 360
consensus_10087#1 ------------------------------------------------------------
consensus_10087#0 CAGAGGGAGGAGGAGGCGATCGCGCCGCGGGCGGGGAGCGGAGCCGCGAGGAGCTGGAGC 420
consensus_10087#1 ------------------------------------------------------------
consensus_10087#0 GGGTGGTGATGGAGCTCGGCTTCCAGAACGACTACCTCAAGTCCCAGATCGCGGCCGCCG 480
consensus_10087#1 ------------------------------------------------------------
consensus_10087#0 AGGGTGGGAGTGGGGCGGCGGAGTCGGAGCTCGTGAAGGGGTTGAAGGAGCAGGTGGAGA 540
consensus_10087#1 ------------------------------------------------------------
consensus_10087#0 GGCTGAGGAAGGAGGTGGAGGAGCACAAGCAGACGCAGAAGGCCACCGAGGCCGCCCTCG 600
consensus_10087#1 ------------------------------------------------------------
consensus_10087#0 AGCACGTCAATGTCGCCTACGCCGAGGCGGACGCCAAGGTCCAGGACCTCACCGCCAAGC 660
consensus_10087#1 ------------------------------------------------------------
consensus_10087#0 TCACCCAAGCTCAGCAGAAAATGGATAAAGAACTAAAAGAAAGAGATGAAAAATATGTTG 720
consensus_10087#1 ------------------------------------------------------------
consensus_10087#0 AGCTGGATACCAAGTTCCAGAGGCTTCACAAGCGTGCTAAACAACGCATACAGGATATAC 780
consensus_10087#1 ------------------------------------------------------------
consensus_10087#0 AGAAGGAAAAAGATGACATGGAAGCTCGCTTTAATGAAATTAACCAGAAGGCTGAGCAGG 840
consensus_10087#1 ------------------------------------------------------------
consensus_10087#0 CTTCTTCTCTGCAGTCAGCAGCACAACAGGAACTGGAACGTGCTCGTCAGCAGGCTAGTG 900
consensus_10087#1 ------------------------------------------------------------
consensus_10087#0 AGGCTTTACGGTCAATGGATGCTGAAAGGCAGCAATTGCGAACGGTGAACAGCAAGTTAA 960
consensus_10087#1 ------------------------------------------------------------
consensus_10087#0 GAACTAATCTTGATGAGGCACGTGTTGCCTTGGAGGCCAGGAATAATGTCCTTGAGAAGT 1020
consensus_10087#1 ------------------------------------------------------------
consensus_10087#0 TGCGACAATCGATGTTTGAAAAAGAACAGTTGTTAGAGCAAACCCAAGCATCACTTCAAT 1080
consensus_10087#1 ------------------------------------------------------------
consensus_10087#0 CTGCAGAAGAAAAGAGAAATGCATCAATTGCGGAGCTTACTGCTAAGCATCA-GAAGCAA 1139
consensus_10087#1 -----------------------------------------------TATCTTGAAGTGA 13
*** **** *
consensus_10087#0 TTAGAAAGCTTGGAGGCACAGCTAACTGAGGTTTCTGCGGAGAGGACAAAAGCATCTGAA 1199
consensus_10087#1 T------GCTTGGGGGCACAGCTAACTGACGTTTCTGCGGAGAGGACAATAGCATCTGAA 67
* ****** *************** ******************* **********
consensus_10087#0 ACGATCCAATCTCTTCAGATGTTGCTTGTGGAGAAAGATTCAGAAATAGCTGAAATTGAA 1259
consensus_10087#1 ACGATCCAATCTCTTCACATGTTGCTTGTGGAGAAAGATTCAGAAATAGCTGAAATTGAA 127
***************** ******************************************
consensus_10087#0 GCAGCTTCTACTGGGGAAGCTGCTCGAATTAGAGCTGCCATGGAGGAGCTTAAAGGCGAG 1319
consensus_10087#1 GCAGCTTCTACTGGGGAAGCTGCTCCAATTAAAGCTGCCATGGAGGAGCTTAAAGGCGAG 187
************************* ***** ****************************
consensus_10087#0 CTTGCTCATCTGAAGGACCAACATGAAAAAGAAAGGCAAAATTGGGAAACTACTTGTGAA 1379
consensus_10087#1 CTTGCTCATCTGAAGGACCAACATGAAAAAGAAAGGCAAAATTGGGAAACTACTTGTGAA 247
************************************************************
consensus_10087#0 TCGCTTAGGACAAAATTGGAAGCATCAGAAAGTGCATGCCATATATCTGTGATAGAATCT 1439
consensus_10087#1 TCGCTTAGGACAAAATTGGAAGCATCAGAAAGTGCATGCCATATATCTGTGATAGAATCT 307
************************************************************
consensus_10087#0 ACTAAAGTTAAAAGTCAACTGGAGTTGGAGTTATCAAAGCAAAACCAATTACTACAAACC 1499
consensus_10087#1 ACTAAAGTTAAAAGTCAACTGGAGTTGGAGTTATCAAAGCAAAACCAATTACTACAAACC 367
************************************************************
consensus_10087#0 AAAGACTCTGATCTATTGGCTGCAAAAGACGAGATTAGTCGGCTGGAAAGCGAGTTTTCT 1559
consensus_10087#1 AAAGACTCTGATCTATTGGCTGCAAAAGACGAGATTAGTCGGCTGGAAAGCGAGTTTTCT 427
************************************************************
consensus_10087#0 GCATATAAGGTCCGCGCACATGCACTTCTGCAAAAGAAGGATGCTGAGCTGAACACAGCT 1619
consensus_10087#1 GCATATAAGGTCCGCGCACATGCACTTCTGCAAAAGAAGGATGCTGAGCTGAACACAGCT 487
************************************************************
consensus_10087#0 AAAAACTCAGATTTGATTAAAGCACATGAAGAAGCAATAAGGGAAGCTGA 1669
consensus_10087#1 AAAAACTCAGATTTGATTAAAGCACATGAAGAAGCAATAAGGGAAGCTGA 537
**************************************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||