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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10090#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1416 fasta sequence
[CACGCATCTCCACTCCTCTTGCATCTCCGGCGAGTTCTCTCCGGCGAGCTCCCTCGCCGCCGGCGATGGAGTTCATCGACGACGACTGGGACTACCAGCCACGCGCGCGAGTCATCCACTCCCGCAGCAACGCTAACTCCAACGGTGCCACCACCGCCTCGTCGTCCCAACCGACCCGCTCCCTCCCCCACACCGCCGCCTGCGCCGCCGCGGCCGTGGCGCTCCTCGCCGCGGCGTACTACCTCCTCCCGGACTACCAGGTCCTCGCATCCGTCGTCGTCTGGGTCGCGTCCTCCCTCCTCCTCGCCCCCTTCGCGCCCTCCTCCGCCACCGGCGGCGACGTCTCCGTCGGCCGCGGGGATCCCCTCCCCGAGCAGGAGCCCGTCGAGGAACCCGTCTCGGATCCCGCCCCCACCTCCCGCCGCGGTCGGCGCCAGAGCTCGAGCTCGAACCCGACGCCTCCGCCCCCGAAGCCCTCAGATCCGATCGCGCCTCCGCCGCCGCGACACGCGGCGGCTGCGGCTGCGGCTGCGGCGACGGCCGTGTCGGATGGCGGCGAGGCGGTGGAGGACGCCGGCGAGTGGACCGACCAAGAGATGGACATCCTCCGCCGCCAGATGGTGAAGCACCCGGCGGGTGAGCCGCAGCGGTGGGAGAAGATTGCCGCGGCGTTCGGCGGCCGCCGCACGCCGGAGAGCGTAATCCGCGCGGCGAAGTCCGGCGGCGGCGCTGCTGCCGCGGGGGCCTCGTTCGACCAGTTCCTCCGCAAGCGCAAGCCGCTCGACCCGAGGTCCGAGGCGACCGACGCAGGAGGTGGCAATGCCGGAGGAGGAGGAGGGGAGAGTGGTGATGGGTCTTGGAGCGCCGGCGATGACCGGGCATTGCTCAACGCGCTCAAGGAGTTCCCCAAGGACACGGCGATGAGGTGGGAGAAGGTGGCGGTGGCGGTGCCCGGGAAGACGAAGGCAGCTTGCATGAAGAGGGTCACCGAGCTCAAGCGCGATTTCCGGAGCAGCAAGGCAGCATCGGAGGCAGCTCCATAGCTGCAAATGCTACCTAGTTGCCTGCAATTCTTCTTTGAGAGTAAGGTTTTAGAC--AGAGATTTACCATGATGAAACGAGAAACGAAAAGCCATTTGCTCCGGGGTGATGCCAAATGAAGGAGACAACTGAATTATAGAACAGATGGTGTACTTTTATTGTTTTG-AGAAAGGTCAGGAAAAAAATCCTTGATACATGAAGATACTGGGACACACGAAAACAAACAGATTGCCAGATTGTAAAAGAAATTGTAGCCCCTTGTTTGGTTGTAGTGTCACTCAAGCCTCCATCCAACATGTGTTAACATTACGTGACTGTTTCTGCTCATCTTTTGATAGGGCTAATACGATACACACTGTTCTCTTCCAAAAAAAAA]
[+] EMBL AK073617 [CACGCATCTCCACTCCTCTTGCATCTCCGGCGAGTTCTCTCCGGCGAGCTCCCTCGCCGCCGGCGATGGAGTTCATCGACGACGACTGGGACTACCAGCCACGCGCGCGAGTCATCCACTCCCGCAGCAACGCTAACTCCAACGGTGCCACCACCGCCTCGTCGTCCCAACCGACCCGCTCCCTCCCCCACACCGCCGCCTGCGCCGCCGCGGCCGTGGCGCTCCTCGCCGCGGCGTACTACCTCCTCCCGGACTACCAGGTCCTCGCATCCGTCGTCGTCTGGGTCGCGTCCTCCCTCCTCCTCGCCCCCTTCGCGCCCTCCTCCGCCACCGGCGGCGACGTCTCCGTCGGCCGCGGGGATCCCCTCCCCGAGCAGGAGCCCGTCGAGGAACCCGTCTCGGATCCCGCCCCCACCTCCCGCCGCGGTCGGCGCCAGAGCTCGAGCTCGAACCCGACGCCTCCGCCCCCGAAGCCCTCAGATCCGATCGCGCCTCCGCCGCCGCGACACGCGGCGGCTGCGGCTGCGGCTGCGGCGACGGCCGTGTCGGATGGCGGCGAGGCGGTGGAGGACGCCGGCGAGTGGACCGACCAAGAGATGGACATCCTCCGCCGCCAGATGGTGAAGCACCCGGCGGGTGAGCCGCAGCGGTGGGAGAAGATTGCCGCGGCGTTCGGCGGCCGCCGCACGCCGGAGAGCGTAATCCGCGCGGCGAAGTCCGGCGGCGGCGCTGCTGCCGCGGGGGCCTCGTTCGACCAGTTCCTCCGCAAGCGCAAGCCGCTCGACCCGAGGTCCGAGGCGACCGACGCAGGAAGTGGCAATGCCGGAGGAGGAGGAGGGGAGAGTGGTGATGGGTCTTGGAGCGCCGGCGATGACCGGGCATTGCTCAACGCGCTCAAGGAGTTCCCCAAGGACACGGCGATGAGGTGGGAGAAGGTGGCGGTGGCGGTGCCCGGGAAGACGAAGGCAGCTTGCATGAAGAGGGTCACCGAGCTCAAGCGCGATTTCCGGAGCAGCAAGGCAGCATCGGAGGCAGCTCCATAGCTGCAAATGCTACCTAGTTGCCTGCAATTCTTCTTTGAGAGTAAGGTTTTAGAC AGAGATTTACCATGATGAAACGAGAAACGAAAAGCCATTTGCTCCGGGGTGATGCCAAATGAAGGAGACAACTGAATTATAGAACAGATGGTGTACTTTTATTGTTTTG AGAAAGGTCAGGAAAAAAATCCTTGATACATGAAGATACTGGGACACACGAAAACAAACAGATTGCCAGATTGTAAAAGAAATTGTAGCCCCTTGTTTGGTTGTAGTGTCACTCAAGCCTCCATCCAACATGTGTTAACATTACGTGACTGTTTCTGCTCATCTTTTGATAGGGCTAATACGATACACAC ]
[+] EMBL AK103973 [ ACGCATCTCCACTCCTCTTGCATCTCCGGCGAGTTCTCTCCGGCGAGCTCCCTCGCCGCCGGCGATGGAGTTCATCGACGACGACTGGGACTACCAGCCACGCGCGCGAGTCATCCACTCCCGCAGCAACGCTAACTCCAACGGTGCCACCACCGCCTCGTCGTCCCAACCGACCCGCTCCCTCCCCCACACCGCCGCCTGCGCCGCCGCGGCCGTGGCGCTCCTCGCCGCGGCGTACTACCTCCTCCCGGACTACCAGGTCCTCGCATCCGTCGTCGTCTGGGTCGCGTCCTCCCTCCTCCTCGCCCCCTTCGCGCCCTCCTCCGCCACCGGCGGCGACGTCTCCGTCGGCCGCGGGGATCCCCTCCCCGAGCAGGAGCCCGTCGAGGAACCCGTCTCGGATCCCGCCCCCACCTCCCGCCGCGGTCGGCGCCAGAGCTCGAGCTCGAACCCGACGCCTCCGCCCCCGAAGCCCTCAGATCCGATCGCGCCTCCGCCGCCGCGACACGCGGCGGCTGCGGCTGCGGCTGCGGCGACGGCCGTGTCGGATGGCGGCGAGGCGGTGGAGGACGCCGGCGAGTGGACCGACCAAGAGATGGACATCCTCCGCCGCCAGATGGTGAAGCACCCGGCGGGTGAGCCGCAGCGGTGGGAGAAGATTGCCGCGGCGTTCGGCGGCCGCCGCACGCCGGAGAGCGTAATCCGCGCGGCGAAGTCCGGCGGCGGCGCTGCTGCCGCGGGGGCCTCGTTCGACCAGTTCCTCCGCAAGCGCAAGCCGCTCGACCCGAGGTCCGAGGCGACCGACGCAGGAAGTGGCAATGCCGGAGGAGGAGGAGGGGAGAGTGGTGATGGGTCTTGGAGCGCCGGCGATGACCGGGCATTGCTCAACGCGCTCAAGGAGTTCCCCAAGGACACGGCGATGAGGTGGGAGAAGGTGGCGGTGGCGGTGCCCGGGAAGACGAAGGCAGCTTGCATGAAGAGGGTCACCGAGCTCAAGCGCGATTTCCGGAGCAGCAAGGCAGCATCGGAGGCAGCTCCATAGCTGCAAATGCTACCTAGTTGCCTGCAATTCTTCTTTGAGAGTAAGGTTTTAGAC AGAGATTTACCATGATGAAACGAGAAACGAAAAGCCATTTGCTCCGGGGTGATGCCAAATGAAGGAGACAACTGAATTATAGAACAGATGGTGTACTTTTATTGTTTTG AGAAAGGTCAGGAAAAAAATCCTTGATACATGAAGATACTGGGACACACGAAAACAAACAGATTGCCAGATTGTAAAAGAAATTGTAGCCCCTTGTTTGGTTGTAGTGTCACTCAAGCCTCCATCCAACATGTGTTAACATTACGTGACTGTTTCTGCTCATCTTTTGATAGGGCTAATACGATACACAC ]
[+] EMBL CB966186 [ CACGCTGGAGAGCGTAAT CGCGCGGCGAAGT CGGCGGCGGCGCTGCTGCCGCGGGGGCCTCGTTCGACCAGTTCCTCCGCAAGCGCAAGCCGCTCGA CCGAGGTCCGAGGCGACCGACGCAGGAGGTGGCAATGCCGGAGGAGGAGGAGGGGAGAGTGGTGATGGGTCTTGGAGCGCCGGCGATGACCGGGCATTGCTCAACGCGCTCAAGGAGTTCCCCAAGGACACGGCGATGAGGTGGGAGAAGGTGGCGGTGGCGGTGCCCGGGAAGACGAAGGCAGCTTGCACGAAGAGGGTCACCGAGCTCAAGCGCGATTTCCGGAGCAGCAAGGCAGCATCGGAGGCAGCTCCATAGCTGCAAATGCTACCTAGTTGCCTGCAATTCTTCTTTGAGAGTAAGGTTTTAGACAAAGAGATATACCATGATGAAACGAGAAACGAAAAGCCATTTGCTCCGGGGTGATGCCAAATGAAGGAGACAACTGAATTATAGAACAGATGGTGTACTTTTATT ]
[+] EMBL BU667315 [ CGGAGAGCGTAAT CGCGCGGCGAAGTCCGGCGGCGGCGCTG TGCCGCCGGGGCCTCGTTCGACCAGTTCCTCCGCAAGCGCAAGCCGCTCGACCCGAGGTCCGAGGCGACCGACGCAGGAGGTGGCAATGCCGGAGGAGGAGGAGGGGAGAGTGGTGATGGGTCTTGGAGCGCCGG GATGACCGGGCATTGCTCAACGCGCTCAAGGAGTTCCCCAAGGACACGGCGATGAGGTGGGAGAAGGTGGCGGTGGCGGTGCCCGGGAAGACGAAGGCAGCTTGCATGAAGAGGGTCACCGAGCTCAAGCGCGATTTCCGGAGCAGCAAGGCAGCATCAGAGGCAGCTCCATAGCTGCAAATGCTACCTAGTTGCCTGCAATTCTTCTTTGAGAGTAAGGTTTTAGAC AGAGATTTACCATGATGAAACGAGAAACGAAAAGCCATTTGCTCCGGGGTGATGCCAAATGAAGGAGACAACTGAATTATAGAACAGATGGTGTACTTTTATTGTTTTGAAGAA ]
[+] EMBL BI305648 [ GAGAGCGTAATCCGCGCGGCGAAGTCCGGCGGCGGCGCTGCTGCCGCGGGGGCCTCGTTCGACCAGTTCCTCCGCAAGCGCAAGCCGCTCGACCCGAGGTCCGAGGCGACCGACGCAGGAGGTGGCAATGCCGGAGGAGGAGGAGGGGAGAGTGGTGATGGGTCTTGGAGCGCCGGCGATGACCGGGCATTGCTCAACGCGCTCAAGGAGTTCCCCAAGGACACGGCGATGAGGTGGGAGAAGGTGGCGGTGGCGGTGCCCGGGAAGACGAAGGCAGCTTGCACGAATAGGGTCACCGAGCTCAAGCTCGATTTCCGGAGCATCAAGGCAGCTTCGGATGCAGCTCCATAGCTGCAAATGCTACCTAGTTGCCTGCAATTCTTCTTTGAGAGTTAGGTTTTAGACAAAGAGATTTACCATGATGAAACCAGAAACCAAAAGCCATTTTCTCCGGGGTGATGCCNATTGAAGGAGACAACTGAATTATATAACAGATGGTGTTCTTTTTTTGTTTTG AGAAAGGTCAGGAAAAAAATCCT ]
[+] EMBL AU070932 [ CAATGCCGGAGGAGGAGGAGGGGAGAGTGGTGATGGGTCTTGGAGCGCCGGCGATGACCGGGCATTGCTCAACGCGCTCAAGGAGTTCCCCAAGGACACGGCGATGAGGTGGGAGAAGGTGGCGGTGGCGGTGCCCGGGAAGACGAAGGCAGCTTGCATGAAGAGGGTCACCGAGCTCAAGCGCGATTTCCGGAGCAGCAAGGCAGCATCGGAGGCAGCTCCATAGCTGCAAATGCTACCTAGTTGCCTGCAATTCTTCTTTGAGAGTAAGGTTTTAGAC AGAGATTTACCATGATGAAACGAGAAACGAAAAGCCATTTGCTCCGGGGTGATGCCAAATGAAGGAGACAACTGAATTATAGAACAGATGGTGTACTTTTATTGTTTTG AGAAAGGTCAGGAAAAAAATCCTTGATACATGAAGATACTGGGACACACGAAAACAAACAGATTGCCAGATTGTAAAAGAAATTGTAGCCCCTTGTTTGGTTGTAGTGTCACTCAAGCCTCCATCCAACATGTGTTAACATTACGTGACTGTTTCTGCTCATCTTTTGATANGGCTAATACGATACACACTGTTCTCTTCCAAAAAAAAA]
consensusID : consensus_10090#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence
[CGGCGCTGCTGCCGCGGGGGCCTAGTTCGACCACTTCCTCCGTAAGCTCAAGCCGCTCGACCAGAGGAATCATGATCGTCACCTACGCCGTGCAGATAGAATTCTAAACTTTCAGTACCGCACTGACGGCCATTTATTATTATGCATATAGTACCTATTCCTTTTGGTCAGATACATTAGTTTACCTATATAAATCTTCCGACTTCTTATTTTTTTACATGCTTCCGTTATATTAT]
[+] EMBL CA756872 [CGGCGCTGCTGCCGCGGGGGCCTAGTTCGACCACTTCCTCCGTAAGCTCAAGCCGCTCGACCAGAGGAATCATGATCGTCACCTACGCCGTGCAGATAGAATTCTAAACTTTCAGTACCGCACTGACGGCCATTTATTATTATGCATATAGTACCTATTCCTTTTGGTCAGATACATTAGTTTACCTATATAAATCTTCCGACTTCTTATTTTTTTACATGCTTCCGTTATATTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10090#0 CACGCATCTCCACTCCTCTTGCATCTCCGGCGAGTTCTCTCCGGCGAGCTCCCTCGCCGC 60
consensus_10090#1 ------------------------------------------------------------
consensus_10090#0 CGGCGATGGAGTTCATCGACGACGACTGGGACTACCAGCCACGCGCGCGAGTCATCCACT 120
consensus_10090#1 ------------------------------------------------------------
consensus_10090#0 CCCGCAGCAACGCTAACTCCAACGGTGCCACCACCGCCTCGTCGTCCCAACCGACCCGCT 180
consensus_10090#1 ------------------------------------------------------------
consensus_10090#0 CCCTCCCCCACACCGCCGCCTGCGCCGCCGCGGCCGTGGCGCTCCTCGCCGCGGCGTACT 240
consensus_10090#1 ------------------------------------------------------------
consensus_10090#0 ACCTCCTCCCGGACTACCAGGTCCTCGCATCCGTCGTCGTCTGGGTCGCGTCCTCCCTCC 300
consensus_10090#1 ------------------------------------------------------------
consensus_10090#0 TCCTCGCCCCCTTCGCGCCCTCCTCCGCCACCGGCGGCGACGTCTCCGTCGGCCGCGGGG 360
consensus_10090#1 ------------------------------------------------------------
consensus_10090#0 ATCCCCTCCCCGAGCAGGAGCCCGTCGAGGAACCCGTCTCGGATCCCGCCCCCACCTCCC 420
consensus_10090#1 ------------------------------------------------------------
consensus_10090#0 GCCGCGGTCGGCGCCAGAGCTCGAGCTCGAACCCGACGCCTCCGCCCCCGAAGCCCTCAG 480
consensus_10090#1 ------------------------------------------------------------
consensus_10090#0 ATCCGATCGCGCCTCCGCCGCCGCGACACGCGGCGGCTGCGGCTGCGGCTGCGGCGACGG 540
consensus_10090#1 ------------------------------------------------------------
consensus_10090#0 CCGTGTCGGATGGCGGCGAGGCGGTGGAGGACGCCGGCGAGTGGACCGACCAAGAGATGG 600
consensus_10090#1 ------------------------------------------------------------
consensus_10090#0 ACATCCTCCGCCGCCAGATGGTGAAGCACCCGGCGGGTGAGCCGCAGCGGTGGGAGAAGA 660
consensus_10090#1 ------------------------------------------------------------
consensus_10090#0 TTGCCGCGGCGTTCGGCGGCCGCCGCACGCCGGAGAGCGTAATCCGCGCGGCGAAGTCCG 720
consensus_10090#1 ------------------------------------------------------------
consensus_10090#0 GCGGCGGCGCTGCTGCCGCGGGGGCCTCGTTCGACCAGTTCCTCCGCAAGCGCAAGCCGC 780
consensus_10090#1 ----CGGCGCTGCTGCCGCGGGGGCCTAGTTCGACCACTTCCTCCGTAAGCTCAAGCCGC 56
*********************** ********* ******** **** ********
consensus_10090#0 TCGACCCGAGGTCCGAGGCGACCGACGCAGGAGGTGGCAATGCCGGAGGAGGAGGAGGGG 840
consensus_10090#1 TCGACCAGAGGAATCA--TGATCGTCAC---------CTACGCCGT--------GCAGAT 97
****** **** * ** ** * * * * **** * *
consensus_10090#0 AGAGTGGTGATGGGTCTTGGAGCGCCGGCGATGACCGGGCATTGCTCAACGCGCTCAAGG 900
consensus_10090#1 AGAATTCTAA--ACTTTCAGTACCGCACTGACGGCCATTTATTATTATGCATATAGTACC 155
*** * * * * * * * * ** * ** *** * * *
consensus_10090#0 AGTTCCCCAAGGACACGGCGATGAGGTGGGAGAAGGTGGCGGTGGCGGTGCCCGGGAAGA 960
consensus_10090#1 TATTCCTTTTGGTCAGATACATTAGTTTACCTATATAAATCTTCCGACTTCTTATTTTTT 215
**** ** ** ** ** * * * * *
consensus_10090#0 CGAAGGCAGCTTGCATGAAGAGGGTCACCGAGCTCAAGCGCGATTTCCGGAGCAGCAAGG 1020
consensus_10090#1 TACATGCTTCCGTTATATTAT--------------------------------------- 236
* ** * **
consensus_10090#0 CAGCATCGGAGGCAGCTCCATAGCTGCAAATGCTACCTAGTTGCCTGCAATTCTTCTTTG 1080
consensus_10090#1 ------------------------------------------------------------
consensus_10090#0 AGAGTAAGGTTTTAGACAGAGATTTACCATGATGAAACGAGAAACGAAAAGCCATTTGCT 1140
consensus_10090#1 ------------------------------------------------------------
consensus_10090#0 CCGGGGTGATGCCAAATGAAGGAGACAACTGAATTATAGAACAGATGGTGTACTTTTATT 1200
consensus_10090#1 ------------------------------------------------------------
consensus_10090#0 GTTTTGAGAAAGGTCAGGAAAAAAATCCTTGATACATGAAGATACTGGGACACACGAAAA 1260
consensus_10090#1 ------------------------------------------------------------
consensus_10090#0 CAAACAGATTGCCAGATTGTAAAAGAAATTGTAGCCCCTTGTTTGGTTGTAGTGTCACTC 1320
consensus_10090#1 ------------------------------------------------------------
consensus_10090#0 AAGCCTCCATCCAACATGTGTTAACATTACGTGACTGTTTCTGCTCATCTTTTGATAGGG 1380
consensus_10090#1 ------------------------------------------------------------
consensus_10090#0 CTAATACGATACACACTGTTCTCTTCCAAAAAAAAA 1416
consensus_10090#1 ------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||