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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10099#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1484 fasta sequence
[GCCAAGACACCCATTGCCTATTCCTGGACCTCAGCCATTGGTGTCAAACGCTCAACAACCTCCGCTTCAATTCCAAGCAAACCCCTCAATTGGGTCTCCCTTTGGTAGACCCCCTGGAATTGTAAGCCCGCAACTAACTCCATCTTCCACATTGCCGCGGTCTGTTAGACCTCTTCAAACACCCCATGCATCTGGAGGATGGCTAAATTTTTCTTCTGTTCCAGTGCAATCTCAGAGGCCTTCACCAGCTTTTATGCCAGTGAGACCTCCTATTTCCGTGTCTCCTCTTGTTTCAAGTCCACAGCTGGAAGGTGCCGCTGTTCCATCGTTTCCTCGTCAATCAAATATCTCCACAAGCTATGGCACTCAGCATCATCCATCAGGCGCAAGCTTTGCATCTTCAGCAACAATGCCTTCCATACCTCCTGGTGCCCCCCAATTGTCACCTCAGGGTCCTTCCTCAATGCCAGTGCTGTCGTCTCCTGCTGGGTTAACAACACAGCCACCTTATCCGCTGCCGATGCAAATGCGTCCTCCCATGGCAACACCTGCTCAAATGAGAGGCCCGCCTTCACCTTTCCCTCAGACTGGGCCAACTCCTGGCATGCCACCTGCTGGCGGGTTTGGTGTGCCTGGTTCTGGAAACATGACCGC-TATGAGGCCACCAC-GCCCAAGC-AGCGGT-GATTTT-ACCTTT--CGGCC-TCTTGTGTC-AGCTTCACC--AACACC--AGAGCTTGGAGCATCAG-GCAG-TCAAGT--GCCA-TTATT--CCA-TCCTGG-CAA--CC-A-G-AGACCACCTATGGCGCGAGTTGAAGGTTTCCAAAGGCCTATTGATATGGGTCATCAGGG-CCGGGCGTATGCCACTGGTCCACCGCATCCACATCAACATCCACATCCACATGCACACTTTGGTGGTGGAGGCTTCCTCCCAAGGAATCCAGCTGCATCTGTGCTTCAATCGGCAGGGACAAGGGGGTTTGTTGGAGCTTTCCCTCTCCCGCCAGCGGCAGTTGAAGCACAACGGCCGTTTCATGTGTTGGCACAAGCACAACAGAAGCCAATATACGATCCATTTGTGCCGAGTGGTGCAGTAATGTCAGGAGGACCTGGAGGTGGAGGAGGAAGAAAAAGGAAGACGGAGGATGACAAGGCTGAGTACGAGGATCTCATGGCGTCCGTTGGTGTCAAGTGACATATGCACTTTCTTTCTTGAGAAGAGTTGGGATCT-TTCTTTCTTTCTTGAGAAGAGTTCA-T-TTGCTA-CTAGT-TGA-CTTTATTAGACTA-CA-CTAGACTAGAAGAGTATAGGATGAGTAATTTTGGCATTAAAGGATAGTAGAAGAGAAGAATGACTGAATGTTTGTTTGTCTGTTATTGATCACTTGTATGTTTTGGTATATTGATCGATGATG-AAATTAAAGCATCGTAATGTCTTGTTTCCTCTTATGTTGTCCTGTTTGGAGAAAATTAAGGAAAATCTTTGATGCAAAAAAAAAAAAAAAAAA]
[+] EMBL CB680622 [GCCAAGACACCCATTGCCTATTCCTGGACCTCAGCCATTGGTGTCAAACGCTCAACAACCTCCGCTTCAATTCCAAGCAAACCCCTCAATTGGGTCTCCCTTTGGTAGACCCCCTGGAATTGTAAGCCCGCAACTAACTCCATCTTCCACATTGCCGCGGTCTGTTAGACCTCTTCAAACACCCCATGCATCTGGAGGATGGCTAAATTTTTCTTCTGTTCCAGTGCAATCTCAGAGGCCTTCACCAGCTTTTATGCCAGTGAGACCTCCTATTTCCGTGTCTCCTCTTGTTTCAAGTCCACAGCTGGAAGGTGCCGCTGTTCCATCGTTTCCTCGTCAATCAAATATCTCCACAAGCTATGGCACTCAGCATCATCCATCAGGCGCAAGCTTTGCATCTTCAGCAACAATGCCTTCCATACCTCCTGGTGCCCCCCAATTGTCACCTCAGGGTCCTTCCTCAATGCCAGTGCTGTCGTCTCCTGCTGGGTTAACAACACAGCCACCTTATCCGCTGCCGATGCAAATGCGTCCTCCCATGGCAACACCTGCTCAAATGAGAGGCCCGCCTTCACCTTTCCCTCAGACTGGGCCAACTCCTGGCATGCCACCTGCTGGCGGGTTTGGTGTGCCTGGTTCTGGAAACATGACCGC TATGAGGCCACCAC GCCCAAGC AGCGGT GATTTT ACCTTT CGGCC TCTTGTGTC AGCTTCACC AACACC AGAGCTTGGAGCATCAG GCAG TCAAGT GCC ]
[+] EMBL C71965 [ GCACTCAGCATCATCCATCAGGCGCAAG TTTGCATCTTCAGCAACAATGCCTTCCATACCTCCTGGTGCCCCCCAATTGTNACCTCAGGGTCCTTCCTCAATGCCAGTGCTGTCGTCTCCTGCTGGGTTAACAACACAGCCACCTTATCCGCTGCCGATGCAAATGCGTCCTCCCATGGCAACACCTGCTCAAATGAGAGGCCCGCCTTCACCTTTCCCTCAGACTGGGCCAACTCCTGGCATGCCACCTGCTGGCGGGTTTGGTGTGCCTGGTTCTGGAAACATGACCGCTTATGAGGNCACCACGGCCCAAGCAAGCGGTGGATTTTAACCTTTTGGGGCC TCTT ]
[-] EMBL CB673292 [ TCTGGAAACATGACCGC TATGAGGCCACCAC GCCCAAGC AGCGGT GATTTT ACCTTT CGGCC TCTTGTGTC AGCTTCACC AACACC AGAGCTTGGAGCATCAG GCAG TCAAGT GCCA TTATT CCA TCCTGG CAA CC A G AGACCACCTATGGCGCGAGTTGAAGGTTTCCAAAGGCCTATTGATATGGGTCATCAGGG CCGGGCGTATGCCACTGGTCCACCGCATCCACATCAACATCCACATCCACATGCACACTTTGGTGGTGGAGGCTTCCTCCCAAGGAATCCAGCTGCATCTGTGCTTCAATCGGCAGGGACAAGGGGGTTTGTTGGAGCTTTCCCTCTCCCGCCAGCGGCAGTTGAAGCACAACGGCCGTTTCATGTGTTGGCACAAGCACAACAGAAGCCAATATACGATCCATTTGTGCCGAGTGGTGCAGTAATGTCAGGAGGACCTGGAGGTGGAGGAGGAAGAAAAAGGAAGACGGAGGATGACAAGGCTGAGTACGAGGATCTCATGGCGTCCGTTGGTGTCAAGTGACATATGCACTTTCTTTCTTGAGAAGAGTTGGGATCT TTCTTTCTTTCTTGAGAAGAGTTCA T TTGCTA CTAGT TGA CTTTATTAGACTA CA CTAGACTAGAAGAGTATAGGATGAGTAATTTTGGCATTAAAGGATAGTAGAAGAGAAGAATGACTGAATGTTTGTTTGTCTGTTATTGATCACTTGTATGTTTTGGTATATTGATCGATGATG A ]
[+] EMBL BQ907189 [ gaTTT ACCTTT CCGCCNTCTTTTCTCAAGTTTCACCAAAACACCCAAGACTTTGTACAATCAGCCCAGTTCAAGTCCCCCATTTATTCCCCATTCTTGGTCAAACCCTATGTAGNCCACTTATGGCGCGAGTTGAAGGTTTCCAAAAGCCTATTGATATGGTTCATCAGGGCCCGGGCGTATGCCACTGGTCCACCGCATCCACATCAACATCCACATCCACATGCACACTTTGGTGGTGGAGGCTTCCTCCCAAGGAATCCAGCTGCATCTGCGCTTCAATCGGCAGGGACAAGGGGGTTTGTTGGAGCTTTCCCTCTCCCGCCAGCGGCAGTTGAAGCACAACGGCCGTTTCATGTGTTGGCACAAGCACAACAGAAGCCAATATACGATCCATTTGTGCCGAGTGGTGCAGTAATGTCAGGAGGACCTGGAGGTGGAGGAGGAAGAAAAAGGAAGACGGAGGATGACAAGGCTGAGTACGAGGATCTCATGGCGTCCGTTGGTGTCAAGTGACATATGCACTTTCTTTCTTGAGAAGAGTTGGGATCTCTTCTTTCTTTCTTGAGAAGAGTTCACTCTTGCTACCTAGTGTGACCTTTATTAGACTACCACCTAGACTAGAAGAGTATAGGATGAGTAATTTTGGCATTAAAGGATAGTAGAAGAGAAGAATGACTGAATGTTTGTTTGTCTGTTATTGATCACTTGTATGTTTTGGTATATTGATCGATGANGNCAATTAAAGCATCGTAAaaaaaaaa ]
[-] EMBL CB644399 [ tgnTGTC AGCTTCACC AACACC AGAGCTTGGAGCATCAG GCAG TCAAGT GCCA TTATT CCA TCCTGG CAA CC A G AGACCACCTATGGCGCGAGTTGAAGGTTTCCAAAGGCCTATTGATATGGGTCATCAGGG CCGGGCGTATGCCACTGGTCCACCGCATCCACATCAACATCCACATCCACATGCACACTTTGGTGGTGGAGGCTTCCTCCCAAGGAATCCAGCTGCATCTGTGCTTCAATCGGCAGGGACAAGGGGGTTTGTTGGAGCTTTCCCTCTCCCGCCAGCGGCAGTTGAAGCACAACGGCCGTTTCATGTGTTGGCACAAGCACAACAGAAGCCAATATACGATCCATTTGTGCCGAGTGGTGCAGTAATGTCAGGAGGACCTGGAGGTGGAGGAGGAAGAAAAAGGAAGACGGAGGATGACAAGGCTGAGTACGAGGATCTCATGGCGTCCGTTGGTGTCAAGTGACATATGCACTTTCTTTCTTGAGAAGAGTTGGGATCT TTCTTTCTTTCTTGAGAAGAGTTCA T TTGCTA CTAGT TGA CTTTATTAGACTA CA CTAGACTAGAAGAGTATAGGATGAGTAATTTTGGCATTAAAGGATAGTAGAAGAGAAGAATGACTGAATGTTTGTTTGTCTGTTATTGATCACTTGTATGTTTTGGTATATTGATCGATGATG AAATTAAAGCATCGTAATGTCTTGTTTCCTCTTATGTTGTCCTGTTTGGAGAAAATTAAGGAAAATCTT ]
[+] EMBL AU165370 [ GGGTCATCAGGC CCGGGCGTATGCCACTGGTCCACCGCATCCACATCAACATCCACATCCACATGCACACTTTGGTGGTGGAGGCTTCCTCCCAAGGAATCCAGCTGCATCTGTGCTTCAATCGGCAGGGACAAGGGGGTTTGTTGGAGCTTTCCCTCTCCNGCCAGCGGCAGTTGAAGCACAACGGCCGTTTCATGTGTTGGCACAAGCACAACAGAAGCCAATATACGATCCATTTGTNCCGAGTGGTGCAGTAATGTCAGGAGGACCTGGAGGTGGAGGAGGAAGAAAAAGGAAGACGGAGGATGACAAGGCTGAGTACGAGGATCTCATGGCGNCCGTTGGTGTCAAGTGACATATGCACTTTCTTTCTTGAGAAGAGTTGGGATCT TTCTTTCTTTCTTGAGAAGAGTTCA T TTGCTA CTAGT TGA CTTTATTAGACTA CA CTAGACTAGAAGAGTATAGGATGAGTAATTTTGGCATTAAAGGATAGTAGAAGAGAAGAATGACTGAATGTTTGTTTGTCTGTTATTGATCACTTGTATGTTTTGGTATATTGATCGATGATG AAATTAAAGCATCGTAATGTCTTGTTTCCTCTTATGTTGTCCTGTTTGGAGAAAATTAAGGAAAATCTTTGATGCAAAAAAAAAAAAAAAAAA]
consensusID : consensus_10099#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence
[AAGAGCCCCCCAAAGNTGATACCGTAGTNCCCCCAGTTTGTGTCTCGGCCCGCGCAATGTTCGGGTTCCCAGTATAATGTTCCCACGNGTAGGGAAACCCCTGGGGAAAGTGTTTCGTTGTAAGTGGAAGGTGTCATAATGTATATTAAACCGGGATACGCACCCGGACGGGATGGGACCATCAGGGCCTNAGAAGTGACCGAGGATGCCTNCATGGGCGTCCCGTTGGGTCGTGNCACAGTGGACCAATGATGGCGCACCTGTTGCTGTGTGCTTCGAGAAGGANTCTGCGGGATGCTGTTGCTTTGCTGTGTGCTTGGAGGAAGGAGGTGTGCAATGTGTGGCTGACTGAGGTGTGGACTGTGTGATTGAGGACTGACACTGAGACTGAGAAGAGTGATAGGATGGAGTGAATTTTGGGCCATTAAAGGATAGTGAGAAGAGAAGAATGGACTGAAATGGTTTGTTTGTCTGTTATTGATCACTTGTATTTTTGGTATATTGATCGATGATGCCATTAAAGCATCGTAAAAAAAA]
[+] EMBL BQ907137 [AAGAGCCCCCCAAAGNTGATACCGTAGTNCCCCCAGTTTGTGTCTCGGCCCGCGCAATGTTCGGGTTCCCAGTATAATGTTCCCACGNGTAGGGAAACCCCTGGGGAAAGTGTTTCGTTGTAAGTGGAAGGTGTCATAATGTATATTAAACCGGGATACGCACCCGGACGGGATGGGACCATCAGGGCCTNAGAAGTGACCGAGGATGCCTNCATGGGCGTCCCGTTGGGTCGTGNCACAGTGGACCAATGATGGCGCACCTGTTGCTGTGTGCTTCGAGAAGGANTCTGCGGGATGCTGTTGCTTTGCTGTGTGCTTGGAGGAAGGAGGTGTGCAATGTGTGGCTGACTGAGGTGTGGACTGTGTGATTGAGGACTGACACTGAGACTGAGAAGAGTGATAGGATGGAGTGAATTTTGGGCCATTAAAGGATAGTGAGAAGAGAAGAATGGACTGAAATGGTTTGTTTGTCTGTTATTGATCACTTGTATTTTTGGTATATTGATCGATGATGCCATTAAAGCATCGTAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10099#0 GCCAAGACACCCATTGCCTATTCCTGGACCTCAGCCATTGGTGTCAAACGCTCAACAACC 60
consensus_10099#1 ------------------------------------------------------------
consensus_10099#0 TCCGCTTCAATTCCAAGCAAACCCCTCAATTGGGTCTCCCTTTGGTAGACCCCCTGGAAT 120
consensus_10099#1 ------------------------------------------------------------
consensus_10099#0 TGTAAGCCCGCAACTAACTCCATCTTCCACATTGCCGCGGTCTGTTAGACCTCTTCAAAC 180
consensus_10099#1 ------------------------------------------------------------
consensus_10099#0 ACCCCATGCATCTGGAGGATGGCTAAATTTTTCTTCTGTTCCAGTGCAATCTCAGAGGCC 240
consensus_10099#1 ------------------------------------------------------------
consensus_10099#0 TTCACCAGCTTTTATGCCAGTGAGACCTCCTATTTCCGTGTCTCCTCTTGTTTCAAGTCC 300
consensus_10099#1 ------------------------------------------------------------
consensus_10099#0 ACAGCTGGAAGGTGCCGCTGTTCCATCGTTTCCTCGTCAATCAAATATCTCCACAAGCTA 360
consensus_10099#1 ------------------------------------------------------------
consensus_10099#0 TGGCACTCAGCATCATCCATCAGGCGCAAGCTTTGCATCTTCAGCAACAATGCCTTCCAT 420
consensus_10099#1 ------------------------------------------------------------
consensus_10099#0 ACCTCCTGGTGCCCCCCAATTGTCACCTCAGGGTCCTTCCTCAATGCCAGTGCTGTCGTC 480
consensus_10099#1 ------------------------------------------------------------
consensus_10099#0 TCCTGCTGGGTTAACAACACAGCCACCTTATCCGCTGCCGATGCAAATGCGTCCTCCCAT 540
consensus_10099#1 ------------------------------------------------------------
consensus_10099#0 GGCAACACCTGCTCAAATGAGAGGCCCGCCTTCACCTTTCCCTCAGACTGGGCCAACTCC 600
consensus_10099#1 ------------------------------------------------------------
consensus_10099#0 TGGCATGCCACCTGCTGGCGGGTTTGGTGTGCCTGGTTCTGGAAACATGACCGCTATGAG 660
consensus_10099#1 ------------------------------------------------------------
consensus_10099#0 GCCACCACGCCCAAGCAGCGGTGATTTTACCTTTCGGCCTCTTGTGTCAGCTTCACCAAC 720
consensus_10099#1 ------------------------------------------------------------
consensus_10099#0 ACCAGAGCTTGGAGCATCAGGCAGTCAAGTGCCATTATTCCATCCTGGCAACCAGAGACC 780
consensus_10099#1 ------------------------------------------------------------
consensus_10099#0 ACCTATGGCGCGAGTTGAAGGTTTCCAAAGGCCTATTGATATGGGTCATCAGGGCCGGGC 840
consensus_10099#1 ------------------------------------------------------------
consensus_10099#0 GTATGCCACTGGTCCACCGCATCCACATCAACATCCACATCCACATGCACACTTTGGTGG 900
consensus_10099#1 ------------------AAGAGCCCCCCAAAGNTGATA-CCGTA-GTNCCCCCAGTTTG 40
* * *** * * ** * * * * * * *
consensus_10099#0 TGGAGGCTTCCTCCCAAGGAATCCAGCTGCATCTGTGCTTCAATCGGCAGGGACAAGGGG 960
consensus_10099#1 TG----TCTCGGCCCGCGCAATGTTCGGGTTCCCAGTATAATGTTCCCACGNGTAGGGAA 96
** ** *** * *** * * * * ** * * **
consensus_10099#0 GTTTGTTGGAGCTTTCCCTCTCCCGCCAGCGGCAGTTGAAGCACAACGGCCGTTTCATGT 1020
consensus_10099#1 ACCC-CTGGGGAAAGTGTTTCGTTGTAAGTGGAAGGTGT--CATAATGTATATT----AA 149
*** * * * ** ** ** ** ** ** * **
consensus_10099#0 GTTGGCACAAGCACAACAGAAGCCAATATACGATCCATTTGTGCCGAGTGGTGCAGTAAT 1080
consensus_10099#1 ACCGGGATACGCACC-CGGACGGGATGGGACCATCAGGGCCTNAGAAGTGAC-CGAGGAT 207
** * * **** * ** * * ** *** * **** * **
consensus_10099#0 GTCAGGAGGACCTGGAGGTGGAGGAGGAAGAAAAAGGAAGACGGAGGATGACAAGGCTGA 1140
consensus_10099#1 GCCTNCATGGGCGTCCCGTTGGGTCGTGNCACAGTGGA---CCAATGATGGCGCACCTGT 264
* * * * * ** * * * * * *** * * **** * ***
consensus_10099#0 GTACGAGGATCTCATGGCGTCCGTTGGTGTCAAGTGACA-TATGCACTTTCTTTCTTGAG 1199
consensus_10099#1 TGCTGTGTGCTTCGAGAAGGANTCTGCGGGATGCTGTTGCTTTGCTGTGTGCTTGGAGGA 324
* * ** * * ** * ** * *** * * ** *
consensus_10099#0 AAGAGTTGGGATCTTTCTTTCTTTCTTGAGAAGAGTTCATTTG-CTACTAGTTGACTTTA 1258
consensus_10099#1 AGGAGGTGTGCAATGTGTGGCTGACTGAGGTGTGGACTGTGTGATTGAGGACTGACACTG 384
* *** ** * * * * ** ** * * * ** * **** *
consensus_10099#0 TTAGACTACACTAGACTAGAAGAGTATAGGATGAGTAATTTTGGCATTAAAGGATAGT-A 1317
consensus_10099#1 --AGACTG-AGAAGAGT--GATAGGATGGAGTGAATT-TTGGGCCATTAAAGGATAGTGA 438
***** * *** * * ** ** * *** * ** * ************** *
consensus_10099#0 GAAGAGAAGAATG-ACTGAAT--GTTTGTTTGTCTGTTATTGATCACTTGTATGTTTTGG 1374
consensus_10099#1 GAAGAGAAGAATGGACTGAAATGGTTTGTTTGTCTGTTATTGATCACTTGTAT-TTTTGG 497
************* ****** ****************************** ******
consensus_10099#0 TATATTGATCGATGATGAAATTAAAGCATCGTAATGTCTTGTTTCCTCTTATGTTGTCCT 1434
consensus_10099#1 TATATTGATCGATGATGCCATTAAAGCATCGTAAAAAAAA-------------------- 537
***************** ***************
consensus_10099#0 GTTTGGAGAAAATTAAGGAAAATCTTTGATGCAAAAAAAAAAAAAAAAAA 1484
consensus_10099#1 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||