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Oryza sativa
cluster # 10100 cluster # 10100       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10100#0 length = 1426 sequences # 4  
consensus_10100#1 length = 1312 sequences # 2  
consensus_10100#2 length = 125 sequences # 1  

consensusID : consensus_10100#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1426
fasta sequence
                              [GGCCTCCCCTCCCCTCCCCTCTCCCCCCAAAACCCCACCTCGCCGGAAACCCTAGAGAAACCCACGAGATGGCCTCCGGCGAGGGCAAGCCGAACCCCGGCGGCGGCGGCGGCGTGGTGGCCAAGGGGAGGAAGCGGAAGTACCTCCCCCACGGGAAGCCGGTGAGGAAGGGGGCGTACCCGCTGCGCCCCGGGGTGCAGGGCTTCTTCCTCACCTGCGACGGCGGCCGCGAGCGCCAGGCCACCCGCGAGGCCCTCTCCCTGCTCGACTCCTTCTATGAGGATCTGGTGGATGGGAAAGGATCAGATGGGAAGCCCAAAAGCATCCCTGATAAACCATTGAACAAAAAAATTACGTTTGCGGATTCCGATTCTTCGGATGATGAGGAAGAAGATCATTCAGGGGAGGTGACTGATGACACAAACAATGCAGACAAAGGTGAAACCACACCTTCTGAGCAGCAGAAAGAGGTGTCTGACACCCCTGTAGTTCCCAGCAAGGACAATGAGGAACAAACAGATAATGCTGATGAATCAAAACT-AAAGAAGCAGCGCGTTCAAGATCCTCCGATATCTGAACAGACAGAACCAAAAGAGCCTACTGATAAGCCAACAGAGTCCACTGATAAACCAAAAGGGTCCAATGATAAACCCATTGATGATTTGATTGATGAGGATTTGAAGGAGCTTGGGGATAGGAAAAAGAGGCTCTTCGCAACCCTTGATTCAGGCTGCAACGGTTGCATCTTCATTCAAATGCACAAAAGAGATGGAGACCCTGGTCCAGTTGAGATCGTACAGAATATGATGTCATCAGCTGCTTCAACTCGTAAACATATGTCCAGATTTATTCTGAGGTTTTTGCCCACTGAGGTGACATGTTATGCATCAGAAGAGGAAATAACAAAAGCAATTAGTCCACTTGTTGAAAAGTACTTTCCAAAGGAATCTTCTTCGGTATATAAGTTTGCTGTGTTATATGAAGCAAGGTCGAACACAGGTATTGATAGGATGAAAATTATCAACGCGGTAGCAAAATCTGTACCTCAACCTCACAAGGTTGATCTCAGCAGTCCAGACAGGACTATTATTGTCCAGATAGCTAAGACTATATGCATGATTGGGGTGGTCGAGAGGTACAAAGAGCTCGCAAAGTTCAACTTAAGGCAGCTGACCTCACCACCGGAGAAGTAGCCAATTGACCAGCTTGAATTAGATTCGGCAGCAGTTGGTTAGTTGTTGGTTGAGCCGTGAAAATCACTATTAAACCAAGATTTCATTGTATCCATCAAAGCCTGGAAATCGTTGGAAAGCAACATGGAATGTTTAACGCTTGACAGTGCAATTTTGGAATTGTTTAATTATTACTGCCGCAGTCGGTCCAATAAATTTCGTCA-AGGTTCTCGCTATCTAAATACATACAGTGC]

[+] EMBL AK121732             [GGCCTCCCCTCCCCTCCCCTCTCCCCCCAAAACCCCACCTCGCCGGAAACCCTAGAGAAACCCACGAGATGGCCTCCGGCGAGGGCAAGCCGAACCCCGGCGGCGGCGGCGGCGTGGTGGCCAAGGGGAGGAAGCGGAAGTACCTCCCCCACGGGAAGCCGGTGAGGAAGGGGGCGTACCCGCTGCGCCCCGGGGTGCAGGGCTTCTTCCTCACCTGCGACGGCGGCCGCGAGCGCCAGGCCACCCGCGAGGCCCTCTCCCTGCTCGACTCCTTCTATGAGGATCTGGTGGATGGGAAAGGATCAGATGGGAAGCCCAAAAGCATCCCTGATAAACCATTGAACAAAAAAATTACGTTTGCGGATTCCGATTCTTCGGATGATGAGGAAGAAGATCATTCAGGGGAGGTGACTGATGACACAAACAATGCAGACAAAGGTGAAACCACACCTTCTGAGCAGCAGAAAGAGGTGTCTGACACCCCTGTAGTTCCCAGCAAGGACAATGAGGAACAAACAGATAATGCTGATGAATCAAAACT AAAGAAGCAGCGCGTTCAAGATCCTCCGATATCTGAACAGACAGAACCAAAAGAGCCTACTGATAAGCCAACAGAGTCCACTGATAAACCAAAAGGGTCCAATGATAAACCCATTGATGATTTGATTGATGAGGATTTGAAGGAGCTTGGGGATAGGAAAAAGAGGCTCTTCGCAACCCTTGATTCAGGCTGCAACGGTTGCATCTTCATTCAAATGCACAAAAGAGATGGAGACCCTGGTCCAGTTGAGATCGTACAGAATATGATGTCATCAGCTGCTTCAACTCGTAAACATATGTCCAGATTTATTCTGAGGTTTTTGCCCACTGAGGTGACATGTTATGCATCAGAAGAGGAAATAACAAAAGCAATTAGTCCACTTGTTGAAAAGTACTTTCCAAAGGAATCTTCTTCGGTATATAAGTTTGCTGTGTTATATGAAGCAAGGTCGAACACAGGTATTGATAGGATGAAAATTATCAACGCGGTAGCAAAATCTGTACCTCAACCTCACAAGGTTGATCTCAGCAGTCCAGACAGGACTATTATTGTCCAGATAGCTAAGACTATATGCATGATTGGGGTGGTCGAGAGGTACAAAGAGCTCGCAAAGTTCAACTTAAGGCAGCTGACCTCACCACCGGAGAAGTAGCCAATTGACCAGCTTGAATTAGATTCGGCAGCAGTTGGTTAGTTGTTGGTTGAGCCGTGAAAATCACTATTAAACCAAGATTTCATTGTATCCATCAAAGCCTGGAAATCGTTGGAAAGCAACATGGAATGTTTAACGCTTGACAGTGCAATTTTGGAATTGTTTAATTATTACTGCCGCAGTCGGTCCAATAAATTTCGTCA AGGTTCTCGCTATCTAAATACATACAGTGC]
[+] EMBL CB664057             [               CCCCTCTCCCCCCAAAACCCCACCTCGCCGGAAACCCTAGAGAAACCCACGAGATGGCCTCCGGCGAGGGCAAGCCGAACCCCGGCGGCGGCGGCGGCGTGGTGGCCAAGGGGAGGAAGCGGAAGTACCTCCCCCACGGGAAGCCGGTGAGGAAGGGGGCGTACCCGCTGCGCCCCGGGGTGCAGGGCTTCTTCCTCACCTGCGACGGCGGCCGCGAGCGCCAGGCCACCCGCGAGGCCCTCTCCCTGCTCGACTCCTTCTATGAAGATCTGGTGGATGGGAAAGGATCAGATGGGAAGCCCAAAAGCATCCCTGATAAACCATTGAAC AAAAAATTACGTTTGCGGATTCCGATTCTTCGGATGATGAGGAAGAAGATCATTCAGGGGAGGTGACTGATGACACAAACAATGCAGACAAAGGTGAAACCACACCTTCTGAGCAGCAGAAAGAGGTGTCTGACACCCCTGTAGTTCCCAGCAAGGACAATGAGGAACAAACAGATAATGCTGATGAATCAAAACTAAAAGAAGCAGCGCGTACAAGATCCTCCGATATCTGAACAGACAGAACCAAAAGAGCCTACTGATAAGCCAACAGAGTCCACTGATAAACCAAAAGGGTCCCATGATAAACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CB656632             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CCAAAAGAGCCTACTGATAAGCCAACAGAGTCCACTGATAAACCAAAAGGGTCCAATGATAAACCCATTGATGATTTGATTGATGAGGATTTGAAGGAGCTTGGGGATAGGAAAAAGAGGCTCTTCGCAACCCTTGATTCAGGCTGCAACGGTTGCATCTTCATTCAAATGCACAAAAGAGATGGAGACCCTGGTCCAGTTGAGATCGTACAGAATATGATGTCATCAGCTGCTTCAACTCGTAAACATATGTCCAGATTTATTCTGAGGTTTTTGCCCACTGAGGTGACATGTTATGCATCAGAAGAGGAAATAACAAAAGCAATTAGTCCACTTGTTGAAAAGTACTTTCCAAAGGAATCTTCTTCGGTATATAAGTTTGCTGTGTTATATGAAGCAAGGTCGAACACAGGTATTGATAGGATGAAAATTATCAACGCGGTAGCAAAATCTGTACCTCAACCTCACAAGGTTGATCTCAGCAGTCCAGACAGGACTATTATTGTCCAGATAGCTAAGACTATATGCATGATTGGGGTGGTCGAGAGGTACAAAGAGCTCGCAAAGTTCAACTTAAGGCAGCTGACCTCACCACCGGAGAAGTAGCCAATTGACCAGCTTGAATTAGATTCGGCAGCAGTTGGTTAGTTGTTGGTTGAGCCGTGAAAATCACTATTAAACCAAGATTTCATTGTATCCATCAAAGCCTGGAAATCGTTGGAAAGCAACATGGAATGTTTAACGCTTGACAGTGCAATTTTGGAATTGTTTAATTATTACTGCCGCAGTGGGTCCAATAAATTTCGTCA AG                            ]
[-] EMBL CB664058             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TCGTACAGAATATGATGTCATCAGCTGCTTCAACTCGTAAACATATGTCCAGATTTATTCTGAGGTTTTTGCCCACTGAGGTGACATGTTATGCATCAGAAGAGGAAATAACAAAAGCAATTAGTCCACTTGTTGAAAAGTACTTTCCAAAGGAATCTTCTTCGGTATATAAGTTTGCTGTGTTATATGAAGCAAGGTCGAACACAGGTATTGATAGGATGAAAATTATCAACGCGGTAGCAAAATCTGTACCTCAACCTCACAAGGTTGATCTCAGCAGTCCAGACAGGACTATTATTGTCCAGATAGCTAAGACTATATGCATGATTGGGGTGGTCGAGAGGTACAAAGAGCTCGCAAAGTTCAACTTAAGGCAGCTGACCTCACCACCGGAGAAGTAGCCAATTGACCAGCTTGAATTAGATTCGGCAGCAGTTGGTTAGTTGTTGGTTGAGCCGTGAAAATCACTATTAAACCAAGATTTCATTGTATCCATCAAAGCCTGGAAATCGTTGGAAAGCAACATGGAATGTTTAACGCTTGACAGTGCAATTTTGGAATTGTTTAATTATTACTGCCGCAGTCGGTCCAATAAATTTCGTCAGAGGTTCTCGCTATa                ]


>consensus_10100#0 GGCCTCCCCTCCCCTCCCCTCTCCCCCCAAAACCCCACCTCGCCGGAAACCCTAGAGAAA CCCACGAGATGGCCTCCGGCGAGGGCAAGCCGAACCCCGGCGGCGGCGGCGGCGTGGTGG CCAAGGGGAGGAAGCGGAAGTACCTCCCCCACGGGAAGCCGGTGAGGAAGGGGGCGTACC CGCTGCGCCCCGGGGTGCAGGGCTTCTTCCTCACCTGCGACGGCGGCCGCGAGCGCCAGG CCACCCGCGAGGCCCTCTCCCTGCTCGACTCCTTCTATGAGGATCTGGTGGATGGGAAAG GATCAGATGGGAAGCCCAAAAGCATCCCTGATAAACCATTGAACAAAAAAATTACGTTTG CGGATTCCGATTCTTCGGATGATGAGGAAGAAGATCATTCAGGGGAGGTGACTGATGACA CAAACAATGCAGACAAAGGTGAAACCACACCTTCTGAGCAGCAGAAAGAGGTGTCTGACA CCCCTGTAGTTCCCAGCAAGGACAATGAGGAACAAACAGATAATGCTGATGAATCAAAAC TAAAGAAGCAGCGCGTTCAAGATCCTCCGATATCTGAACAGACAGAACCAAAAGAGCCTA CTGATAAGCCAACAGAGTCCACTGATAAACCAAAAGGGTCCAATGATAAACCCATTGATG ATTTGATTGATGAGGATTTGAAGGAGCTTGGGGATAGGAAAAAGAGGCTCTTCGCAACCC TTGATTCAGGCTGCAACGGTTGCATCTTCATTCAAATGCACAAAAGAGATGGAGACCCTG GTCCAGTTGAGATCGTACAGAATATGATGTCATCAGCTGCTTCAACTCGTAAACATATGT CCAGATTTATTCTGAGGTTTTTGCCCACTGAGGTGACATGTTATGCATCAGAAGAGGAAA TAACAAAAGCAATTAGTCCACTTGTTGAAAAGTACTTTCCAAAGGAATCTTCTTCGGTAT ATAAGTTTGCTGTGTTATATGAAGCAAGGTCGAACACAGGTATTGATAGGATGAAAATTA TCAACGCGGTAGCAAAATCTGTACCTCAACCTCACAAGGTTGATCTCAGCAGTCCAGACA GGACTATTATTGTCCAGATAGCTAAGACTATATGCATGATTGGGGTGGTCGAGAGGTACA AAGAGCTCGCAAAGTTCAACTTAAGGCAGCTGACCTCACCACCGGAGAAGTAGCCAATTG ACCAGCTTGAATTAGATTCGGCAGCAGTTGGTTAGTTGTTGGTTGAGCCGTGAAAATCAC TATTAAACCAAGATTTCATTGTATCCATCAAAGCCTGGAAATCGTTGGAAAGCAACATGG AATGTTTAACGCTTGACAGTGCAATTTTGGAATTGTTTAATTATTACTGCCGCAGTCGGT CCAATAAATTTCGTCAAGGTTCTCGCTATCTAAATACATACAGTGC



consensusID : consensus_10100#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1312
fasta sequence
                              [CCTCCGGCGAGGGCAAGCCGAACCCCGGCGGCGGCGGCGGCGTGGTGGCCAAGGGGAGGAAGCGGAAGTACCTCCCCCACGGGAAGCCGGTGAGGAAGGGGGCGTACCCGCTGCGCCCCGGGGTGCAGGGCTTCTTCCTCACCTGCGACGGCGGCCGCGAGCGCCAGGCCACCCGCGAGGCCCTCTCCCTGCTCGACTCCTTCTATGAAGATCTGGTGGATGGGAAAGGATCAGATGGGAAGCCCAAAAGCATCCCTGATAAACCATTGAACAAAAAAATTACGTTTGCGGATTCCGATTCTTCGGATGATGAGGAAGAAGATCATTCAGGGGAGGTGACTGATGACACAAACAATGCAGACAAAGGTGAAACCACACCTTCTGAGCAGCAGAAAGAGGTGTCTGACACCCCTGTAGTTCCCAGCAAGGACAATGAGGAACAAACAGATAATGCTGATGAATCAAAACTAAAGAAGCAGCGCGTACAAGATCCTCCGATATCTGAACAGACAGAACCAAAAGAGCCTACTGATAAGCCAACAGAGTCCACTGATAAACCAAAAGGGTCCAATGATAAACCCATTGATGATTTGATTGATGAGGATTTGAAGGAGCTTGGGGATAGGAAAAAGAGGCTCTTCGCAACCCTTGATTCAGGCTGCAACGGTTGCATCTTCATTCAAATGCACAAAAGAGATGGAGACCCTGGTCCAGTTGAGATCGTACAGAATATGATGTCATCAGCTGCTTCAACTCGTAAACATATGTCCAGATTTATTCTGAGGTTTTTGCCCACTGAGGTGACATGTTATGCATCAGAAGAGGAAATAACAAAAGCAATTAGTCCACTTGTTGAAAAGTACTTTCCAAAGGAATCTTCTTCGGTATATAAGTTTGCTGTGTTATATGAAGCAAGGTCGAACACAGGTATTGATAGGATGAAAATTATCAACGCGGTAGCAAAATCTGTACCTCAACCTCACAAGGTTGATCTCAGCAGTCCAGACAGGACTATTATTGTCCAGATAGCTAAGATTTTCGGAGAGAATCAACAGGGAGTGTGTTTTGGTAGGTGTATAGCGTGGGGTGCTTGAGAAAGGAGCCAGAGGAGAGGACGCAAACAAGAAGCAAACCTGAAGGCGTGGATGAAGTTTTGAGTCAAGAGCATAATGTTTAATGTAATGAACATAATGTTTACTGCAATGGGATTTCAATTGTCTGAACATAATCTTTCTAGCTATCAGTCTCAGTCCGGAAGTGTGCAAGAACAGCAGCATATGCATAGAGAAAGTGGATAAATTCTGGTACCAAG]

[+] EMBL AK119932             [CCTCCGGCGAGGGCAAGCCGAACCCCGGCGGCGGCGGCGGCGTGGTGGCCAAGGGGAGGAAGCGGAAGTACCTCCCCCACGGGAAGCCGGTGAGGAAGGGGGCGTACCCGCTGCGCCCCGGGGTGCAGGGCTTCTTCCTCACCTGCGACGGCGGCCGCGAGCGCCAGGCCACCCGCGAGGCCCTCTCCCTGCTCGACTCCTTCTATGAAGATCTGGTGGATGGGAAAGGATCAGATGGGAAGCCCAAAAGCATCCCTGATAAACCATTGAACAAAAAAATTACGTTTGCGGATTCCGATTCTTCGGATGATGAGGAAGAAGATCATTCAGGGGAGGTGACTGATGACACAAACAATGCAGACAAAGGTGAAACCACACCTTCTGAGCAGCAGAAAGAGGTGTCTGACACCCCTGTAGTTCCCAGCAAGGACAATGAGGAACAAACAGATAATGCTGATGAATCAAAACTAAAGAAGCAGCGCGTACAAGATCCTCCGATATCTGAACAGACAGAACCAAAAGAGCCTACTGATAAGCCAACAGAGTCCACTGATAAACCAAAAGGGTCCAATGATAAACCCATTGATGATTTGATTGATGAGGATTTGAAGGAGCTTGGGGATAGGAAAAAGAGGCTCTTCGCAACCCTTGATTCAGGCTGCAACGGTTGCATCTTCATTCAAATGCACAAAAGAGATGGAGACCCTGGTCCAGTTGAGATCGTACAGAATATGATGTCATCAGCTGCTTCAACTCGTAAACATATGTCCAGATTTATTCTGAGGTTTTTGCCCACTGAGGTGACATGTTATGCATCAGAAGAGGAAATAACAAAAGCAATTAGTCCACTTGTTGAAAAGTACTTTCCAAAGGAATCTTCTTCGGTATATAAGTTTGCTGTGTTATATGAAGCAAGGTCGAACACAGGTATTGATAGGATGAAAATTATCAACGCGGTAGCAAAATCTGTACCTCAACCTCACAAGGTTGATCTCAGCAGTCCAGACAGGACTATTATTGTCCAGATAGCTAAGATTTTCGGAGAGAATCAACAGGGAGTGTGTTTTGGTAGGTGTATAGCGTGGGGTGCTTGAGAAAGGAGCCAGAGGAGAGGACGCAAACAAGAAGCAAACCTGAAGGCGTGGATGAAGTTTTGAGTCAAGAGCATAATGTTTAATGTAATGAACATAATGTTTACTGCAATGGGATTTCAATTGTCTGAACATAATCTTTCTAGCTATCAGTCTCAGTCCGGAAGTGTGCAAGAACAGCAGCATATGCATAGAGAAAGTGGATAAATTCTGGTACCAAG]
[+] EMBL CB656631             [              AAGCCCTTCCCCGGCGGCGGCGGCGGCGTGGTGGCCAAGGGGAGGAAGCGGAAGTACCTCCCCCACGGGAAGCCGGTGAGGAAGGGGGCGTACCCGCTGCGCCCCGGGGTGCAGGGCTTCTTCCTCACCTGCGACGGCGGCCGCGAGCGCCAGGCCACCCGCGAGGCCCTCTCCCTGCTCGACTCCTTCTATGAAGATCTGGTGGATGGGAAAGGATCAGATGGGAAGCCCAAAAGCATCCCTGATAAACCATTGAACAAAAAAATTACGTTTGCGGATTCCGATTCTTCGGATGATGAGGAAGAAGATCATTCAGGGGAGGTGACTGATGACACAAACAATGCAGACAAAGGTGAAACCACACCTTCTGAGCAGCAGAAAGAGGTGTCTGACACCCCTGTAGTTCCCAGCAAGGACAATGAGGAACAAACAGATAATGCTGATGAATCAAAACTAAAGAAGCAGCGCGTACAAGATCCTCCGATATCTGAACAGACAGAACCAAAAGAGCCTACTGATAAGCCAACAGAGTCCACTGATAAACCAAAAGGGTCCAATGATAAACCCATTGATGATTTGATTGATGAGGATTTGAAGGAGCTTGGGGATAGGAAAAAGAGGCTCTTCGCAACCCTTGATTCAGGCTGCAACGGTTGCATCTTCATTCAAATGCACAAAAGAGATGGAGACCCTGGTCCAGTTGAGATCGTACAGAATATGATGTCATCAGCTGCTTCAACTCGTAAACATATGTCCAGATTTATTCTGANGTTTTTGCCCACTGAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]


>consensus_10100#1 CCTCCGGCGAGGGCAAGCCGAACCCCGGCGGCGGCGGCGGCGTGGTGGCCAAGGGGAGGA AGCGGAAGTACCTCCCCCACGGGAAGCCGGTGAGGAAGGGGGCGTACCCGCTGCGCCCCG GGGTGCAGGGCTTCTTCCTCACCTGCGACGGCGGCCGCGAGCGCCAGGCCACCCGCGAGG CCCTCTCCCTGCTCGACTCCTTCTATGAAGATCTGGTGGATGGGAAAGGATCAGATGGGA AGCCCAAAAGCATCCCTGATAAACCATTGAACAAAAAAATTACGTTTGCGGATTCCGATT CTTCGGATGATGAGGAAGAAGATCATTCAGGGGAGGTGACTGATGACACAAACAATGCAG ACAAAGGTGAAACCACACCTTCTGAGCAGCAGAAAGAGGTGTCTGACACCCCTGTAGTTC CCAGCAAGGACAATGAGGAACAAACAGATAATGCTGATGAATCAAAACTAAAGAAGCAGC GCGTACAAGATCCTCCGATATCTGAACAGACAGAACCAAAAGAGCCTACTGATAAGCCAA CAGAGTCCACTGATAAACCAAAAGGGTCCAATGATAAACCCATTGATGATTTGATTGATG AGGATTTGAAGGAGCTTGGGGATAGGAAAAAGAGGCTCTTCGCAACCCTTGATTCAGGCT GCAACGGTTGCATCTTCATTCAAATGCACAAAAGAGATGGAGACCCTGGTCCAGTTGAGA TCGTACAGAATATGATGTCATCAGCTGCTTCAACTCGTAAACATATGTCCAGATTTATTC TGAGGTTTTTGCCCACTGAGGTGACATGTTATGCATCAGAAGAGGAAATAACAAAAGCAA TTAGTCCACTTGTTGAAAAGTACTTTCCAAAGGAATCTTCTTCGGTATATAAGTTTGCTG TGTTATATGAAGCAAGGTCGAACACAGGTATTGATAGGATGAAAATTATCAACGCGGTAG CAAAATCTGTACCTCAACCTCACAAGGTTGATCTCAGCAGTCCAGACAGGACTATTATTG TCCAGATAGCTAAGATTTTCGGAGAGAATCAACAGGGAGTGTGTTTTGGTAGGTGTATAG CGTGGGGTGCTTGAGAAAGGAGCCAGAGGAGAGGACGCAAACAAGAAGCAAACCTGAAGG CGTGGATGAAGTTTTGAGTCAAGAGCATAATGTTTAATGTAATGAACATAATGTTTACTG CAATGGGATTTCAATTGTCTGAACATAATCTTTCTAGCTATCAGTCTCAGTCCGGAAGTG TGCAAGAACAGCAGCATATGCATAGAGAAAGTGGATAAATTCTGGTACCAAG



consensusID : consensus_10100#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 125
fasta sequence
                              [GAGTAGAAATTGATTGTTTAACGCTTGACAGTGCAATTTTGGAATTGTTTAATTATTACTGCCGCAGTCGGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF331807             [GAGTAGAAATTGATTGTTTAACGCTTGACAGTGCAATTTTGGAATTGTTTAATTATTACTGCCGCAGTCGGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_10100#2 GAGTAGAAATTGATTGTTTAACGCTTGACAGTGCAATTTTGGAATTGTTTAATTATTACT GCCGCAGTCGGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10100#0      GGCCTCCCCTCCCCTCCCCTCTCCCCCCAAAACCCCACCTCGCCGGAAACCCTAGAGAAA 60
consensus_10100#1      ------------------------------------------------------------
consensus_10100#2      ------------------------------------------------------------
                                                                                   

consensus_10100#0      CCCACGAGATGGCCTCCGGCGAGGGCAAGCCGAACCCCGGCGGCGGCGGCGGCGTGGTGG 120
consensus_10100#1      ------------CCTCCGGCGAGGGCAAGCCGAACCCCGGCGGCGGCGGCGGCGTGGTGG 48
consensus_10100#2      ------------------------------------------------------------
                                                                                   

consensus_10100#0      CCAAGGGGAGGAAGCGGAAGTACCTCCCCCACGGGAAGCCGGTGAGGAAGGGGGCGTACC 180
consensus_10100#1      CCAAGGGGAGGAAGCGGAAGTACCTCCCCCACGGGAAGCCGGTGAGGAAGGGGGCGTACC 108
consensus_10100#2      ------------------------------------------------------------
                                                                                   

consensus_10100#0      CGCTGCGCCCCGGGGTGCAGGGCTTCTTCCTCACCTGCGACGGCGGCCGCGAGCGCCAGG 240
consensus_10100#1      CGCTGCGCCCCGGGGTGCAGGGCTTCTTCCTCACCTGCGACGGCGGCCGCGAGCGCCAGG 168
consensus_10100#2      ------------------------------------------------------------
                                                                                   

consensus_10100#0      CCACCCGCGAGGCCCTCTCCCTGCTCGACTCCTTCTATGAGGATCTGGTGGATGGGAAAG 300
consensus_10100#1      CCACCCGCGAGGCCCTCTCCCTGCTCGACTCCTTCTATGAAGATCTGGTGGATGGGAAAG 228
consensus_10100#2      ------------------------------------------------------------
                                                                                   

consensus_10100#0      GATCAGATGGGAAGCCCAAAAGCATCCCTGATAAACCATTGAACAAAAAAATTACGTTTG 360
consensus_10100#1      GATCAGATGGGAAGCCCAAAAGCATCCCTGATAAACCATTGAACAAAAAAATTACGTTTG 288
consensus_10100#2      ------------------------------------------------------------
                                                                                   

consensus_10100#0      CGGATTCCGATTCTTCGGATGATGAGGAAGAAGATCATTCAGGGGAGGTGACTGATGACA 420
consensus_10100#1      CGGATTCCGATTCTTCGGATGATGAGGAAGAAGATCATTCAGGGGAGGTGACTGATGACA 348
consensus_10100#2      -------------------------------------------------------GAGTA 5
                                                                                  *

consensus_10100#0      CAAACAATGCAGACAAAGGT-GAAACCACACCTTCTGAGCAGCAGAAAGAGGTGTCTGAC 479
consensus_10100#1      CAAACAATGCAGACAAAGGT-GAAACCACACCTTCTGAGCAGCAGAAAGAGGTGTCTGAC 407
consensus_10100#2      GAAATTGATTGTTTAACGCTTGACAGTGCAATTTTGGAATTGTTTAATTA-----TTACT 60
                        ***          ** * * ** *   **  **  **   *   **  *      *   

consensus_10100#0      ACCCCTGTAGTTCCCAGCAAGGACAATGAGGAACAAACAGATAATGCTGATGAATCAAAA 539
consensus_10100#1      ACCCCTGTAGTTCCCAGCAAGGACAATGAGGAACAAACAGATAATGCTGATGAATCAAAA 467
consensus_10100#2      GCCGCAGTCGGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 120
                        ** * ** * *** *  **  * **  *  ** *** * * **     *  **  ****

consensus_10100#0      CTAAAGAAGCAGCGCGTTCAAGATCCTCCGATATCTGAACAGACAGAACCAAAAGAGCCT 599
consensus_10100#1      CTAAAGAAGCAGCGCGTACAAGATCCTCCGATATCTGAACAGACAGAACCAAAAGAGCCT 527
consensus_10100#2      AAAAA------------------------------------------------------- 125
                         ***                                                       

consensus_10100#0      ACTGATAAGCCAACAGAGTCCACTGATAAACCAAAAGGGTCCAATGATAAACCCATTGAT 659
consensus_10100#1      ACTGATAAGCCAACAGAGTCCACTGATAAACCAAAAGGGTCCAATGATAAACCCATTGAT 587
consensus_10100#2      ------------------------------------------------------------
                                                                                   

consensus_10100#0      GATTTGATTGATGAGGATTTGAAGGAGCTTGGGGATAGGAAAAAGAGGCTCTTCGCAACC 719
consensus_10100#1      GATTTGATTGATGAGGATTTGAAGGAGCTTGGGGATAGGAAAAAGAGGCTCTTCGCAACC 647
consensus_10100#2      ------------------------------------------------------------
                                                                                   

consensus_10100#0      CTTGATTCAGGCTGCAACGGTTGCATCTTCATTCAAATGCACAAAAGAGATGGAGACCCT 779
consensus_10100#1      CTTGATTCAGGCTGCAACGGTTGCATCTTCATTCAAATGCACAAAAGAGATGGAGACCCT 707
consensus_10100#2      ------------------------------------------------------------
                                                                                   

consensus_10100#0      GGTCCAGTTGAGATCGTACAGAATATGATGTCATCAGCTGCTTCAACTCGTAAACATATG 839
consensus_10100#1      GGTCCAGTTGAGATCGTACAGAATATGATGTCATCAGCTGCTTCAACTCGTAAACATATG 767
consensus_10100#2      ------------------------------------------------------------
                                                                                   

consensus_10100#0      TCCAGATTTATTCTGAGGTTTTTGCCCACTGAGGTGACATGTTATGCATCAGAAGAGGAA 899
consensus_10100#1      TCCAGATTTATTCTGAGGTTTTTGCCCACTGAGGTGACATGTTATGCATCAGAAGAGGAA 827
consensus_10100#2      ------------------------------------------------------------
                                                                                   

consensus_10100#0      ATAACAAAAGCAATTAGTCCACTTGTTGAAAAGTACTTTCCAAAGGAATCTTCTTCGGTA 959
consensus_10100#1      ATAACAAAAGCAATTAGTCCACTTGTTGAAAAGTACTTTCCAAAGGAATCTTCTTCGGTA 887
consensus_10100#2      ------------------------------------------------------------
                                                                                   

consensus_10100#0      TATAAGTTTGCTGTGTTATATGAAGCAAGGTCGAACACAGGTATTGATAGGATGAAAATT 1019
consensus_10100#1      TATAAGTTTGCTGTGTTATATGAAGCAAGGTCGAACACAGGTATTGATAGGATGAAAATT 947
consensus_10100#2      ------------------------------------------------------------
                                                                                   

consensus_10100#0      ATCAACGCGGTAGCAAAATCTGTACCTCAACCTCACAAGGTTGATCTCAGCAGTCCAGAC 1079
consensus_10100#1      ATCAACGCGGTAGCAAAATCTGTACCTCAACCTCACAAGGTTGATCTCAGCAGTCCAGAC 1007
consensus_10100#2      ------------------------------------------------------------
                                                                                   

consensus_10100#0      AGGACTATTATTGTCCAGATAGCTAAGACTATATGCATGATTGGGGTGGTCGAGAGGTAC 1139
consensus_10100#1      AGGACTATTATTGTCCAGATAGCTAAGATTTT--------CGGAGAGAATCAACAGGGAG 1059
consensus_10100#2      ------------------------------------------------------------
                                                                                   

consensus_10100#0      AAAGAGCTCGCAAA-GTTCAACTTAAGGCAGCTGACCTCACCACCGGAGAAGTAGCCAAT 1198
consensus_10100#1      TGTGTTTTGGTAGGTGTATAGCGTGGGGTGCTTGAGAAAGGAGCCAGAGGAGAGGACG-- 1117
consensus_10100#2      ------------------------------------------------------------
                                                                                   

consensus_10100#0      TGACCAGCTTGAATTAGATTCGGCAGCAGTTGGTTAGTTGTTGGTTGAGCCGTGAAAATC 1258
consensus_10100#1      ---CAAACAAGAAGCAAACCTGAAGGC-GTGGATGAA--GTT--TTGAGTCAAGAGCATA 1169
consensus_10100#2      ------------------------------------------------------------
                                                                                   

consensus_10100#0      ACTATTAAACCAA-GATTTCATTGTATCCATCAAAGCCTGGAAATCGTTGGAAAGCAACA 1317
consensus_10100#1      ATGTTTAATGTAATGAACATAATGTTTACTGCAATG---GGATTTCAATTGTCTG-AACA 1225
consensus_10100#2      ------------------------------------------------------------
                                                                                   

consensus_10100#0      TGGAATGTTTAACGCTTGACAGTGCAATTTTGGAATTGTTTAATTATTACTGCCGCAGTC 1377
consensus_10100#1      TAATCTTTCTAGC---TATCAGTCTCAGTCCGGAAGTGTGCAAGAA---CAGCAGCATAT 1279
consensus_10100#2      ------------------------------------------------------------
                                                                                   

consensus_10100#0      GGTCCAATAAATTTCGTCAAGGTTCTCGCTATCTAAATACATACAGTGC 1426
consensus_10100#1      GCATAGAGAAAGTGGATAAA---TTCTGGTACCAAG------------- 1312
consensus_10100#2      -------------------------------------------------
                                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)