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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10102#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1358 fasta sequence
[GTGCCTTTGAGCTTTCGTTCTCTAGAGTGTCTAGGGTGAATCTTGAGCGAGTGAGCGAGCGATCTCTGTGTTGTGTAGTTTGTGAGCTAGGGTGATGGCTAACACCGGACTTAGCATCCCCATGGTGAATGGTGCCACAATCCACCTCCTCCCTGGTTTCCGGTTCCGTCCAACTGACGATGAGCTAGTCATCAAATACCTCTACCCCCGTGCTTTTCATGTGCCACTGCCCTGTGCGATCATCACCGATGTTGACATCCATCATCACAACCCCTGGGACATCGTCCCAGTGGCGGAGAGGGAGAAAGGGAAGCACTTCTTCACAAGAAAGGAGGTCAAGTACCCTGGTAGCCGCCGTAGCAACCGTGTTGCTGGTAATGGCTTCTGGAGAGCAGCAGGCTCGGAGGTGCCCATCTATTACAAACCAGAAGGTGCTGCTAACGACATGCTAGTTGGGATGAGGCGGACTCTAGTGTTCCACTACGGAAAGTCACGATCTGCAGAGCGCACTGAATGGGCCATGCATGAGTTTCAGCTTGCTGGTGCTGGTCTCCTTCCTCACCCTATGATGAGGCATGCAACCAGCAATGGTTCAGAGCCACCCTGTGGCTGCCTTGAAGCGACAATCGCTAAGAAAAGTGATGGTCTCTCTGCAACTCTTCGTGCCAAGCGTGATTCTGCCCCTCTTATGAGAATCATGGTAGAACCCGATAGCTCATGGGTGATCTGCTGCATCTACAAGAAGAGGCAGCGTGCCCCGCCTGTTGTTATCCCTCCTGTCATTGGCGATGTAGGGGAAGCTATCATCCCTCATGCTATTGGCGATGCAAGGGAAGGCCAACTTCACTTCATTGACTTCCTGGGGCAGCCAGCTCGCAATGATCCATCCTCGCCCCATAGCTGCACCA-TTGACCCCTCCTCTTTGGAGGAAGGGAGTGATGAGTCTGCCGGTGATGGTGAAGATAAGGATGGTGATGGCATGAATGAAGCAAATTGATCGAGTGTGAAGGAAGTGAACTGAGTCTCA-AGAATAAAAACTGCA-AGTATGGCGCTCCA-TTCCATGGAAGACCTGCATGCATCCTATATATGTGCTTTTATGTTCAAGTTGGAGAACTATGTGTGTTGTCTTTAAGTTGGAG-TACTCTAAGCTATTCGATCTGGAGATTATGCTGTTTTTAATAAAAGTTTGAAGTGTATCTGTCCTGTTTAATTAGTTTCAAGAAAGCCA-AGCGTGTTTGGGTTCTAGGATGAACAAAGTCGTCCAAGATG-CAAGAAGTTCTAGAGAGGTAGCTACATTTCTGGAAATTGTTGCATCTTCCTTTCTTCAATATATATATATTGTCCTA----ATAAAAAAAAAA]
[+] EMBL AK107369 [GTGCCTTTGAGCTTTCGTTCTCTAGAGTGTCTAGGGTGAATCTTGAGCGAGTGAGCGAGCGATCTCTGTGTTGTGTAGTTTGTGAGCTAGGGTGATGGCTAACACCGGACTTAGCATCCCCATGGTGAATGGTGCCACAATCCACCTCCTCCCTGGTTTCCGGTTCCGTCCAACTGACGATGAGCTAGTCATCAAATACCTCTACCCCCGTGCTTTTCATGTGCCACTGCCCTGTGCGATCATCACCGATGTTGACATCCATCATCACAACCCCTGGGACATCGTCCCAGTGGCGGAGAGGGAGAAAGGGAAGCACTTCTTCACAAGAAAGGAGGTCAAGTACCCTGGTAGCCGCCGTAGCAACCGTGTTGCTGGTAATGGCTTCTGGAGAGCAGCAGGCTCGGAGGTGCCCATCTATTACAAACCAGAAGGTGCTGCTAACGACATGCTAGTTGGGATGAGGCGGACTCTAGTGTTCCACTACGGAAAGTCACGATCTGCAGAGCGCACTGAATGGGCCATGCATGAGTTTCAGCTTGCTGGTGCTGGTCTCCTTCCTCACCCTATGATGAGGCATGCAACCAGCAATGGTTCAGAGCCACCCTGTGGCTGCCTTGAAGCGACAATCGCTAAGAAAAGTGATGGTCTCTCTGCAACTCTTCGTGCCAAGCGTGATTCTGCCCCTCTTATGAGAATCATGGTAGAACCCGATAGCTCATGGGTGATCTGCTGCATCTACAAGAAGAGGCAGCGTGCCCCGCCTGTTGTTATCCCTCCTGTCATTGGCGATGTAGGGGAAGCTATCATCCCTCATGCTATTGGCGATGCAAGGGAAGGCCAACTTCACTTCATTGACTTCCTGGGGCAGCCAGCTCGCAATGATCCATCCTCGCCCCATAGCTGCACCA TTGACCCCTCCTCTTTGGAGGAAGGGAGTGATGAGTCTGCCGGTGATGGTGAAGATAAGGATGGTGATGGCATGAATGAAGCAAATTGATCGAGTGTGAAGGAAGTGAACTGAGTCTCA AGAATAAAAACTGCA AGTATGGCGCTCCA TTCCATGGAAGACCTGCATGCATCCTATATATGTGCTTTTATGTTCAAGTTGGAGAACTATGTGTGTTGTCTTTAAGTTGGAG TACTCTAAGCTATTCGATCTGGAGATTATGCTGTTTTTAATAAAAGTTTGAAGTGTATCTGTCCTGTTTAATTAGTTTCAAGAAAGCCA AGCGTGTTTGGGTTCTAGGATGAACAAAGTCGTCCAAGATG CAAGAAGTTCTAGAGAGGTAGCTACATTTCTGGAAATTGTTGCATCTTCCTTTCTTCAATATATATATATTGT ]
[+] EMBL AU174438 [ GTTCTCTAGAGTGTCTAGGGTGAATCTTGAGCGAGTGAGCGAGCGATCTCTGTGTTGTGTAGTTTGTGAGCTAGGGTGATGGCTAACACCGGACTTAGCATCCCCATGGTGAATGGTGCCACAATCCACCTCCTCCCTGGTTTCCGGTTCCGTCCAACTGACGATGAGCTAGTCATCAAATACCTCTACCCCCGTGCTTTTCATGTGCCACTGCCCTGTGCGATCATCACCGATGTTGACATCCATCATCACAACCCCTGGGACATCGTCCCAGTGGCGGAGAGGGAGAAAGGGAAGCACTTCTTCACAAGAAAGGAGGTCAAGTACCCTGGTAGCCGCCGTAGCAACCGTGTTGCTGGTAATGGCTTCTGGAGAGCAGCAGGCTCGGAGGTGCCCATCTATTACAAACCAGAAGGTGCTGCTAACGACATGCTAGT ]
[+] EMBL BI799958 [ ATCCTCGCCCCATAGCTGCACCACTTGACCCCTCCTCTTTGGAGGAAGGGAGTGATGAGTCTGCCCGTGATGGTGAAGATAAGGATGGTGATGGCATGAATGAAGCCAATTGATCGAGTGTGAAGGAAGTGAACTGAGTCTCACAGAATTAAAACTGCACAGTATGGTGCTCCACTTCCCTGGAAGACCTGCATGCATCCTATATATGTGCTTTTATGTTCAAGTTGGAGAACTATGTGTGTTGTCTTTAAGTTGGAG TACTCTAAGCTATTCGATCTGGAGATTATGCTGTTTTTAATAAAAGTTTGGAGTGTATGTGTCCTGTTTAATTAGTTTCAAGAAAGTCA AGCATGTTTGGGTTCTAGGATGAACCAAGTCATCCCAGATG CCAGAAGTTCTAGAGAGGTAGCTACATTTCTGGAAATTGTTGCATCTTCCTTTCTTCAATATATAT TTGTCCTATTTCATAAAAAAAAAA]
[+] EMBL AU174439 [ CCCTCCTCTTTGGAGGAAGGGAGTGATGAGTCTGCCGGTGATGGTGAAGATAAGGATGGTGATGGCATGAATGAAGCAAATTGATCGAGTGTGAAGGAAGTGAACTGAGTCTCA AGAATAAAAACTGCA AGTATGGCGCTCCA TTCCATGGAAGACCTGCATGCATCCTATATATGTGCTTTTATGTTCAAGTTGGAGAACTATGTGTGTTGTCTTTAAGTTGGAG TACTCTAAGCTATTCGATCTGGAGATTATGCTGTTTTTAATAAAAGTTTGAAGTGTATCTGTCCTGTTTAATTAGTTTCAAGAAAGCCA AGCGTGTTTGGGTTCTAGGATGAACAAAGTCGTCCAAGATG CAAGAAGTTCTAGAGAGGTAGCTACATTTCTGGAAATTGTTGCATCTTCCTTTCTTCAATATATATATATTGTCCTA AAAAAAAAAAAA]
[+] EMBL BI799828 [ CCTCTTTGGAGGAAGGGAGTGATGAGTCTGCCCGTGATGGTGAAGATAAGGATGGTGATGGCATGAATGAAGC AATTGATCGAGTGTGAAGGAAGTGAACTGAGTCTCA AGAATAAAAACTGCA AGTATGGTGCTCCA TTCCCTGGAAGACCTGCATGCATCCTATATATGTGCTTTTATGTTCAAGTTGGAGAACTATGTGTGTTGTCTTTAAGTTGGAG TACTCTAAGCTATTCGATCTGGAGATTATGCTGTTTTTAATAAAAGTTTGGAGTGTATGTGTCCTGTTTAATTAGTTTCAAGAAAGTCACAGCATGTTTGGGTTCTAGGATGAACCAAGTCATCCCAGATGCCAAGAAGTTCTAGAGAGGTAGCTACATTTCTGGAAATTGTTGCATCTTCCTTTCTTCCA ATATATATGTTGTCCTATTTCATAAAAAAAAAA]
[+] EMBL AA751388 [ GTCTGCCGGTGATGGTGAAGATAAGGATGGTGATGGCATGAATGAAGCAAATTGATCGAGTGTGAAGGAAGTGAACTGAGTCTCA AGAATAAAAACTGCA AGTATGGCTCTCCA TTCCATGGAAGACCTGCATGCATCCTATATATATNCTTTTATGTTCAAGTTGGAGAACTATGTGTGTTGTCTTTAAGTTGGAGCTAC ]
consensusID : consensus_10102#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence
[AGAGCCAGGCGTGCCCCGCCCTTTTTGTTATCCCTCCCTGGTCCATTTGGCCGATGTTAGGGGGAAAGCTTATCCATCCCCTCATGCTATGCGGATGCAAAGGGAAAGCCAAGTTCACTTTCATTGACTTCCTGGGCAACCAGCTCGCAATGATCCATCCTCGCCCACATAGCTGCACCATTGACCCCTCCTCTTTGGAGGAAGGGAGTGATGAGTCTGCCAGTGATGGTGAAGATAAGGATGGTGATGGCATGAATGAAGCAATTGATCGAGTGTGAAGGAAGTGAACTGAGTCTCAAGAATATAACACTGCAAGTATGGTGCTCCATTCCATGGAAGACCTGCATGCATCCTATATATGTGCTTTTATGTTCAAGTTGGAGAACTATGTGTGTTGTCTTTAAGTTGGAGTACTCTAAGCTATTCGATCTGGAGATTATGCTGTTTTTAATCAAAGTTTGGAGTGTATGTGTCCTGTTTAAAAAA]
[+] EMBL BI799042 [AGAGCCAGGCGTGCCCCGCCCTTTTTGTTATCCCTCCCTGGTCCATTTGGCCGATGTTAGGGGGAAAGCTTATCCATCCCCTCATGCTATGCGGATGCAAAGGGAAAGCCAAGTTCACTTTCATTGACTTCCTGGGCAACCAGCTCGCAATGATCCATCCTCGCCCACATAGCTGCACCATTGACCCCTCCTCTTTGGAGGAAGGGAGTGATGAGTCTGCCAGTGATGGTGAAGATAAGGATGGTGATGGCATGAATGAAGCAATTGATCGAGTGTGAAGGAAGTGAACTGAGTCTCAAGAATATAACACTGCAAGTATGGTGCTCCATTCCATGGAAGACCTGCATGCATCCTATATATGTGCTTTTATGTTCAAGTTGGAGAACTATGTGTGTTGTCTTTAAGTTGGAGTACTCTAAGCTATTCGATCTGGAGATTATGCTGTTTTTAATCAAAGTTTGGAGTGTATGTGTCCTGTTTAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10102#0 GTGCCTTTGAGCTTTCGTTCTCTAGAGTGTCTAGGGTGAATCTTGAGCGAGTGAGCGAGC 60
consensus_10102#1 ------------------------------------------------------------
consensus_10102#0 GATCTCTGTGTTGTGTAGTTTGTGAGCTAGGGTGATGGCTAACACCGGACTTAGCATCCC 120
consensus_10102#1 ------------------------------------------------------------
consensus_10102#0 CATGGTGAATGGTGCCACAATCCACCTCCTCCCTGGTTTCCGGTTCCGTCCAACTGACGA 180
consensus_10102#1 ------------------------------------------------------------
consensus_10102#0 TGAGCTAGTCATCAAATACCTCTACCCCCGTGCTTTTCATGTGCCACTGCCCTGTGCGAT 240
consensus_10102#1 ------------------------------------------------------------
consensus_10102#0 CATCACCGATGTTGACATCCATCATCACAACCCCTGGGACATCGTCCCAGTGGCGGAGAG 300
consensus_10102#1 ------------------------------------------------------------
consensus_10102#0 GGAGAAAGGGAAGCACTTCTTCACAAGAAAGGAGGTCAAGTACCCTGGTAGCCGCCGTAG 360
consensus_10102#1 ------------------------------------------------------------
consensus_10102#0 CAACCGTGTTGCTGGTAATGGCTTCTGGAGAGCAGCAGGCTCGGAGGTGCCCATCTATTA 420
consensus_10102#1 ------------------------------------------------------------
consensus_10102#0 CAAACCAGAAGGTGCTGCTAACGACATGCTAGTTGGGATGAGGCGGACTCTAGTGTTCCA 480
consensus_10102#1 ------------------------------------------------------------
consensus_10102#0 CTACGGAAAGTCACGATCTGCAGAGCGCACTGAATGGGCCATGCATGAGTTTCAGCTTGC 540
consensus_10102#1 ------------------------------------------------------------
consensus_10102#0 TGGTGCTGGTCTCCTTCCTCACCCTATGATGAGGCATGCAACCAGCAATGGTTCAGAGCC 600
consensus_10102#1 ------------------------------------------------------------
consensus_10102#0 ACCCTGTGGCTGCCTTGAAGCGACAATCGCTAAGAAAAGTGATGGTCTCTCTGCAACTCT 660
consensus_10102#1 ------------------------------------------------------------
consensus_10102#0 TCGTGCCAAGCGTGATTCTGCCCCTCTTATGAGAATCATGGTAGAACCCGATAGCTCATG 720
consensus_10102#1 ------------------------------------------------------------
consensus_10102#0 GGTGATCTGCTGCATCTACAAGAAGAGGCAG-CGTGCCCCGCC--TGTTGTTATCCCTCC 777
consensus_10102#1 -----------------------AGAGCCAGGCGTGCCCCGCCCTTTTTGTTATCCCTCC 37
**** *** *********** * *************
consensus_10102#0 TG---TCATTGG--CGATGT---AGGGGAAGCT-ATCA--TCCCTCATGCTATTGGCGAT 826
consensus_10102#1 CTGGTCCATTTGGCCGATGTTAGGGGGAAAGCTTATCCATCCCCTCATGCTAT-GCGGAT 96
**** * ****** *** ***** *** ************ * ***
consensus_10102#0 GCAA-GGGAAGGCCAACTTCACTT-CATTGACTTCCTGGGGCAGCCAGCTCGCAATGATC 884
consensus_10102#1 GCAAAGGGAAAGCCAAGTTCACTTTCATTGACTTCCTGGG-CAACCAGCTCGCAATGATC 155
**** ***** ***** ******* *************** ** ****************
consensus_10102#0 CATCCTCGCCC-CATAGCTGCACCATTGACCCCTCCTCTTTGGAGGAAGGGAGTGATGAG 943
consensus_10102#1 CATCCTCGCCCACATAGCTGCACCATTGACCCCTCCTCTTTGGAGGAAGGGAGTGATGAG 215
*********** ************************************************
consensus_10102#0 TCTGCCGGTGATGGTGAAGATAAGGATGGTGATGGCATGAATGAAGCAAATTGATCGAGT 1003
consensus_10102#1 TCTGCCAGTGATGGTGAAGATAAGGATGGTGATGGCATGAATGAAGCAA-TTGATCGAGT 274
****** ****************************************** **********
consensus_10102#0 GTGAAGGAAGTGAACTGAGTCTCAAGAATAAAA-ACTGCAAGTATGGCGCTCCATTCCAT 1062
consensus_10102#1 GTGAAGGAAGTGAACTGAGTCTCAAGAATATAACACTGCAAGTATGGTGCTCCATTCCAT 334
****************************** ** ************* ************
consensus_10102#0 GGAAGACCTGCATGCATCCTATATATGTGCTTTTATGTTCAAGTTGGAGAACTATGTGTG 1122
consensus_10102#1 GGAAGACCTGCATGCATCCTATATATGTGCTTTTATGTTCAAGTTGGAGAACTATGTGTG 394
************************************************************
consensus_10102#0 TTGTCTTTAAGTTGGAGTACTCTAAGCTATTCGATCTGGAGATTATGCTGTTTTTAATAA 1182
consensus_10102#1 TTGTCTTTAAGTTGGAGTACTCTAAGCTATTCGATCTGGAGATTATGCTGTTTTTAATCA 454
********************************************************** *
consensus_10102#0 AAGTTTGAAGTGTATCTGTCCTGTTTAATTAGTTTCAAGAAAGCCAAGCGTGTTTGGGTT 1242
consensus_10102#1 AAGTTTGGAGTGTATGTGTCCTGTTTAAAAAA---------------------------- 486
******* ******* ************ *
consensus_10102#0 CTAGGATGAACAAAGTCGTCCAAGATGCAAGAAGTTCTAGAGAGGTAGCTACATTTCTGG 1302
consensus_10102#1 ------------------------------------------------------------
consensus_10102#0 AAATTGTTGCATCTTCCTTTCTTCAATATATATATATTGTCCTAATAAAAAAAAAA 1358
consensus_10102#1 --------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||