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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10105#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2553 fasta sequence
[TACTCACTACACTACCAGTTGGTGTTTGTTCTGAGCATTATTGGAGTGTCAGGGAAGGGCATGTGCTTTTGTTGGTTGCTGTAGGAGGAGGCAGCCATCCACTGGGCCTCACTCTCCTCTTGTTGCTGCCTCCTCCTCTTGTTACTGTTCAGTCTCAGGCTCTCAGGCTCACAGGTGGGGTTTTGGGAGATACTAGTTAGGAGGGAAAGGTTGCCATCTTGTGTGTGTTGGATCTTTAATACAACGGGGATAACGATTCTCTCTCAGCTAAAGGAGGTGAGATTCTTGGTTTCACATCAAGTATTATTGTTCTTTCTTTTACTTCCTTCAAAATAGTTTCTTTGCTTTTTATTTCATATATGGTTTGGTTTATTTATGCTCCCCAACAAGCAACTGGTTCATGTGCGGTAACAAGGAGCAAATAATGCAGCTCTGATTGACTTGGGGTAGTTGTTGTGGTGATAGATTGGAAAGGGTTTAAATAGCGGGTGGTTGTGGTGATGAATGGGGGCCAGCCTTGATGGGGTTGATGCTGTCGTCTTTTAGGTCGGGGAAACAAGTGGGATAGGATCTCCCTCAAGTCGAGGTGAGTGAGAACTCAGCCAAGAACAACAATGGAGTCTCTGTTGCTTTAGTTCTGCCAGCCAATTGGTTTCAACTTTCAACGCTGCTACTTGTTATTCATCACCTCCTCGGATCGGTTTGATTTATGCTCAAGGTTGTGCTATGCATGGTCATGCTGATTGAGGGCAAGATTTGCAGGGAGAGGAAGGATCCACTGTGTTTCTTTTCTGGGAGAAAGGAAAGTTGAGATTTGCAATATATACAAGTGTGAGCAGCAGCAGTTGAGATCCTTAATTCAGCCATGGCTTCTTTTGGGATGAACTGGAATCAGAAGAGCCCTGTGTTTTGGGACTGGGAAAATCCAGCGCCTTTCGGTCCGAATACAATGGAAAATCCCAAGAGCATACCTCACCCTGAACCAAGAGGTGTAGTTGTCGCGGCCGCAAATCATGGATCCACCAATTCATCCGGTGGCACGTTCACTTCTAGCTCGGAGCTAGCCAATGGTTCATCGAAGAGCTCCTTGTCAGCGTCGTTCGATTCCTCATCCAAGCTGGGGAACAGCTTAGAGTTCAGGTTTGCTTCTGTCAAAGGGCATGGCAAGAACATGTGCAAGGATGGCGAGGCCGGTAGAGTTGAAGACTCGGGCACTTCTCCAGCTGTGGCAGTTAGCCATGGTGAGCCGGTAATAGGACTCAAGTTAGGGAAGAGAACTTACTTTGAAAATGTTTGTGGAGGGCAGAATGTCAAGAGCTCCTCTGCAGCTTCAGGTGTGACTTGTCCATCTACTGTGGTCAAGAAGATGAAGGTGTCTCAGCAGAGCACACAAAGCTCATACTGCCAAGTTGAAGGCTGCAAAGTCGATCTGTCCTCCGCAAGAGAATACCATCGCAAGCACAAAGTTTGTGAAGCTCATTCTAAGGCACCAAAGGTTATTGTTTCTGGTCTGGAGCGCCGTTTTTGCCAACAGTGTAGTCGGTTTCATGGTTTAGCTGAATTTGACCAGAAAAAGAAAAGTTGCCGCAGGCGTCTATCTGATCATAATGCACGAAGAAGGAAACCGCAACAAGAGGCAATTTCATTTGGTTCATCAAGGCTCGCCACGATGTTTTACGATGCAAGGCAGCAGACAGATATTTACTTTGGCCAATCTCCTTTTGGCCAAGTGAGAAGCAATGCAATTTCTTCATGTGACAACCTGGGAGGCTTCAAATTTACAGAAGCAAAACTCCCCTGGATGAAGCCAATGAAAACTATAGGCCTTGAGGATCTGAATTTCTCTACCCTGCAGATGCCAGGCAATGTTGTGTCGCATACGGTGCATCATCATGATTTTGATGGGCTCATACCATTCAAGGGAAACACCCCGAAGGTCCTCAACCAAGGTGTGGATCCAGCCTGTGCCGTCGTGTCCTCCAACTCGAATGGAGCCCCGGATCTTCGGCGTGCTCTCTCTCTTCTGTCAAGCGATTCCTGGGGCCCGGCCGACGTTCAGGCCGGCTCCCAGGTGCATCCCGGTGGAGTGATGCCGCCCCTCGCCGTTGCCGCCGCCACCGTCACCGCCCCGACGAACCCTGTCAGTGTGATGCATGCTCTGCACCCGTCCACCGGAGGAGGAGGATTCTGGCAAGACGGCGACGACCCGCCTCCGCTCGATCATGCCTCGCAGGCTCAGGCGTTCATGCATCCTGGCAATGGCAGCAGCTCCGGCTATGGCCATCTGCACTGATTCTGCTGCATCTATTTGGAACGGGTTGATGACTGGTTACTCCGTTCATGATCTTACCCTGTCAGTGATGGACTCTGAATAATTTGGGGGCGAATTGTCCTGCAACCCCAGGATTTATTATTTCTATTTTTGAAACCAAACCACCAGGATATTTGCCATTGGATGAGAAGTGTTCATGATCATGAAATGATCTGTTTTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK073179 [TACTCACTACACTACCAGTTGGTGTTTGTTCTGAGCATTATTGGAGTGTCAGGGAAGGGCATGTGCTTTTGTTGGTTGCTGTAGGAGGAGGCAGCCATCCACTGGGCCTCACTCTCCTCTTGTTGCTGCCTCCTCCTCTTGTTACTGTTCAGTCTCAGGCTCTCAGGCTCACAGGTGGGGTTTTGGGAGATACTAGTTAGGAGGGAAAGGTTGCCATCTTGTGTGTGTTGGATCTTTAATACAACGGGGATAACGATTCTCTCTCAGCTAAAGGAGGTGAGATTCTTGGTTTCACATCAAGTATTATTGTTCTTTCTTTTACTTCCTTCAAAATAGTTTCTTTGCTTTTTATTTCATATATGGTTTGGTTTATTTATGCTCCCCAACAAGCAACTGGTTCATGTGCGGTAACAAGGAGCAAATAATGCAGCTCTGATTGACTTGGGGTAGTTGTTGTGGTGATAGATTGGAAAGGGTTTAAATAGCGGGTGGTTGTGGTGATGAATGGGGGCCAGCCTTGATGGGGTTGATGCTGTCGTCTTTTAGGTCGGGGAAACAAGTGGGATAGGATCTCCCTCAAGTCGAGGTGAGTGAGAACTCAGCCAAGAACAACAATGGAGTCTCTGTTGCTTTAGTTCTGCCAGCCAATTGGTTTCAACTTTCAACGCTGCTACTTGTTATTCATCACCTCCTCGGATCGGTTTGATTTATGCTCAAGGTTGTGCTATGCATGGTCATGCTGATTGAGGGCAAGATTTGCAGGGAGAGGAAGGATCCACTGTGTTTCTTTTCTGGGAGAAAGGAAAGTTGAGATTTGCAATATATACAAGTGTGAGCAGCAGCAGTTGAGATCCTTAATTCAGCCATGGCTTCTTTTGGGATGAACTGGAATCAGAAGAGCCCTGTGTTTTGGGACTGGGAAAATCCAGCGCCTTTCGGTCCGAATACAATGGAAAATCCCAAGAGCATACCTCACCCTGAACCAAGAGGTGTAGTTGTCGCGGCCGCAAATCATGGATCCACCAATTCATCCGGTGGCACGTTCACTTCTAGCTCGGAGCTAGCCAATGGTTCATCGAAGAGCTCCTTGTCAGCGTCGTTCGATTCCTCATCCAAGCTGGGGAACAGCTTAGAGTTCAGGTTTGCTTCTGTCAAAGGGCATGGCAAGAACATGTGCAAGGATGGCGAGGCCGGTAGAGTTGAAGACTCGGGCACTTCTCCAGCTGTGGCAGTTAGCCATGGTGAGCCGGTAATAGGACTCAAGTTAGGGAAGAGAACTTACTTTGAAAATGTTTGTGGAGGGCAGAATGTCAAGAGCTCCTCTGCAGCTTCAGGTGTGACTTGTCCATCTACTGTGGTCAAGAAGATGAAGGTGTCTCAGCAGAGCACACAAAGCTCATACTGCCAAGTTGAAGGCTGCAAAGTCGATCTGTCCTCCGCAAGAGAATACCATCGCAAGCACAAAGTTTGTGAAGCTCATTCTAAGGCACCAAAGGTTATTGTTTCTGGTCTGGAGCGCCGTTTTTGCCAACAGTGTAGTCGGTTTCATGGTTTAGCTGAATTTGACCAGAAAAAGAAAAGTTGCCGCAGGCGTCTATCTGATCATAATGCACGAAGAAGGAAACCGCAACAAGAGGCAATTTCATTTGGTTCATCAAGGCTCGCCACGATGTTTTACGATGCAAGGCAGCAGACAGATATTTACTTTGGCCAATCTCCTTTTGGCCAAGTGAGAAGCAATGCAATTTCTTCATGTGACAACCTGGGAGGCTTCAAATTTACAGAAGCAAAACTCCCCTGGATGAAGCCAATGAAAACTATAGGCCTTGAGGATCTGAATTTCTCTACCCTGCAGATGCCAGGCAATGTTGTGTCGCATACGGTGCATCATCATGATTTTGATGGGCTCATACCATTCAAGGGAAACACCCCGAAGGTCCTCAACCAAGGTGTGGATCCAGCCTGTGCCGTCGTGTCCTCCAACTCGAATGGAGCCCCGGATCTTCGGCGTGCTCTCTCTCTTCTGTCAAGCGATTCCTGGGGCCCGGCCGACGTTCAGGCCGGCTCCCAGGTGCATCCCGGTGGAGTGATGCCGCCCCTCGCCGTTGCCGCCGCCACCGTCACCGCCCCGACGAACCCTGTCAGTGTGATGCATGCTCTGCACCCGTCCACCGGAGGAGGAGGATTCTGGCAAGACGGCGACGACCCGCCTCCGCTCGATCATGCCTCGCAGGCTCAGGCGTTCATGCATCCTGGCAATGGCAGCAGCTCCGGCTATGGCCATCTGCACTGATTCTGCTGCATCTATTTGGAACGGGTTGATGACTGGTTACTCCGTTCATGATCTTACCCTGTCAGTGATGGACTCTGAATAATTTGGGGGCGAATTGTCCTGCAACCCCAGGATTTATTATTTCTATTTTTGAAACCAAACCACCAGGATATTTGCCATTGGATGAGAAGTGTTCATGATCATGAAATGATCTGT ]
[+] EMBL AK061641 [ TTCGGTCCGAATACAATGGAAAATCCCAAGAGCATACCTCACCCTGAACCAAGAGGTGTAGTTGTCGCGGCCGCAAATCATGGATCCACCAATTCATCCGGTGGCACGTTCACTTCTAGCTCGGAGCTAGCCAATGGTTCATCGAAGAGCTCCTTGTCAGCGTCGTTCGATTCCTCATCCAAGCTGGGGAACAGCTTAGAGTTCAGGTTTGCTTCTGTCAAAGGGCATGGCAAGAACATGTGCAAGGATGGCGAGGCCGGTAGAGTTGAAGACTCGGGCACTTCTCCAGCTGTGGCAGTTAGCCATGGTGAGCCGGTAATAGGACTCAAGTTAGGGAAGAGAACTTACTTTGAAAATGTTTGTGGAGGGCAGAATGTCAAGAGCTCCTCTGCAGCTTCAGGTGTGACTTGTCCATCTACTGTGGTCAAGAAGATGAAGGTGTCTCAGCAGAGCACACAAAGCTCATACTGCCAAGTTGAAGGCTGCAAAGTCGATCTGTCCTCCGCAAGAGAATACCATCGCAAGCACAAAGTTTGTGAAGCTCATTCTAAGGCACCAAAGGTTATTGTTTCTGGTCTGGAGCGCCGTTTTTGCCAACAGTGTAGTCGGTTTCATGGTTTAGCTGAATTTGACCAGAAAAAGAAAAGTTGCCGCAGGCGTCTATCTGATCATAATGCACGAAGAAGGAAACCGCAACAAGAGGCAATTTCATTTGGTTCATCAAGGCTCGCCACGATGTTTTACGATGCAAGGCAGCAGACAGATATTTACTTTGGCCAATCTCCTTTTGGCCAAGTGAGAAGCAATGCAATTTCTTCATGTGACAACCTGGGAGGCTTCAAATTTACAGAAGCAAAACTCCCCTGGATGAAGCCAATGAAAACTATAGGCCTTGAGGATCTGAATTTCTCTACCCTGCAGATGCCAGGCAATGTTGTGTCGCATACGGTGCATCATCATGATTTTGATGGGCTCATACCATTCAAGGGAAACACCCCGAAGGTCCTCAACCAAGGTGTGGATCCAGCCTGTGCCGTCGTGTCCTCCAACTCGAATGGAGCCCCGGATCTTCGGCGTGCTCTCTCTCTTCTGTCAAGCGATTCCTGGGGCCCGGCCGACGTTCAGGCCGGCTCCCAGGTGCATCCCGGTGGAGTGATGCCGCCCCTCGCCGTTGCCGCCGCCACCGTCACCGCCCCGACGAACCCTGTCAGTGTGATGCATGCTCTGCACCCGTCCACCGGAGGAGGAGGATTCTGGCAAGACGGCGACGACCCGCCTCCGCTCGATCATGCCTCGCAGGCTCAGGCGTTCATGCATCCTGGCAATGGCAGCAGCTCCGGCTATGGCCATCTGCACTGATTCTGCTGCATCTATTTGGAACGGGTTGATGACTGGTTACTCCGTTCATGATCTTACCCTGTCAGTGATGGACTCTGAATAATTTGGGGGCGAATTGTCCTGCAACCCCAGGATTTATTATTTCTATTTTTGAAACCAAACCACCAGGATATTTGCCATTGGATGAGAAGTGTTCATGATCATGAAATGATCT ]
[+] EMBL AU070834 [ GATTCTGGCAAGACGGCGACGACCCGCCTCCGCTCGATCATGCCTCGCAGGCTCAGGCGTTAATGCATCCTGGCAATGGCAGCAGCTCCGGCTATGGCCATCTGCACTGATTCTGCTGCATCTATTTGGAACGGGTTGATGACTGGTTACTCCGTTCATGATCTTACCCTGTCAGTGATGGACTCTGAATAATTTGGGGGCGAATTGTCCTGCAACCCCAGGATTTATTATTTCTATTTTTGAAACCAAACCACCAGGATATTTGCCATTGGATGAGAAGTGTTCATGATCATGAAATGATCTGTTTTGTTCAAAAA ]
[+] EMBL AU183853 [ CTCGCAGGCTCAGGCGTTCATGCATCCTGGCAATGGCAGCAGCTCCGGCTATGGCCATCTGCACTGATTCTGCTGCATCTATTTGGAACGGGTTGATGACTGGTTACTCCGTTCATGATCTTACCCTGTCAGTGATGGACTCTGAATAATTTGGGGGCGAATTGTCCTGCAACCCCAGGATTTATTATTTCTATTTTTGAAACCAAACCACCAGGATATTTGCCATTGGATGAGAAGTGTTCATGATCATGAAATGATCTGTTTTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL AU164324 [ TCTGCTGCATCTATTTGGAACGGGTTGATGACTGGTTACNCCGTTCATGATNTTNCCCTGTCAGTGATGGACTCTGAATAATTTGGGGGCGAATTNTCCTGCAACCCCAGGATTTATTATTTCTATTTTTGAAACCAAACCNCCAGGATATTTGCCATTGGATGAGAAGTGTTCATGATCATGAAATGATCTGTTTTGTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_10105#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2225 fasta sequence
[TCAAATCAAGCAAAGCACCACTGCTGCTGCAAAGAACACCAGATAGATCAAACTCTCTCTCTCTCTGGTGTTGCTGTTAGTTGGTAGTTTGGTACTACTTGGTACTCTGGGAAGAAGAAAGAGATTATTATAGCAGAAAAGCAGCACCATGGCATAGCTCCAGGCAGCAAAACCAGAATACAACGGGGATAACGATTCTCTCTCAGCTAAAGGAGGTCGGGGAAACAAGTGGGATAGGATCTCTCTCAAGTCGAGGTGAGTGAGAACTCAGCCAAGAACAACAATGGAGTCTCTGTTGCTTTAGTTCTGCCAGCCAATTGGTTTCAACTTTCAACGCTGCTACTTGTTATTCATCACCTCCTCGGATCGGTTTGATTTATGCTCAAGGTTGTGCTATGCATGGTCATGCTGATTGAGGGCAAGATTTGCAGGGAGAGGAAGGATCCACTGTGTTTCTTTTCTGGGAGAAAGGAAAGTTGAGATTTGCAATATATACAAGTGTGAGCAGCAGCAGTTGAGATCCTTAATTCAGCCATGGCTTCTTTTGGGATGAACTGGAATCAGAAGAGCCCTGTGTTTTGGGACTGGGAAAATCCAGCGCCTTTCGGTCCGAATACAATGGAAAATCCCAAGAGCATACCTCACCCTGAACCAAGAGGTGTAGTTGTCGCGGCCGCAAATCATGGATCCACCAATTCATCCGGTGGCACGTTCACTTCTAGCTCGGAGCTAGCCAATGGTTCATCGAAGAGCTCCTTGTCAGCGTCGTTCGATTCCTCATCCAAGCTGGGGAACAGCTTAGAGTTCAGGTTTGCTTCTGTCAAAGGGCATGGCAAGAACATGTGCAAGGATGGCGAGGCCGGTAGAGTTGAAGACTCGGGCACTTCTCCAGCTGTGGCAGTTAGCCATGGTGAGCCGGTAATAGGACTCAAGTTAGGGAAGAGAACTTACTTTGAAAATGTTTGTGGAGGGCAGAATGTCAAGAGCTCCTCTGCAGCTTCAGGTGTGACTTGTCCATCTACTGTGGTCAAGAAGATGAAGGTGTCTCAGCAGAGCACACAAAGCTCATACTGCCAAGTTGAAGGCTGCAAAGTCGATCTGTCCTCCGCAAGAGAATACCATCGCAAGCACAAAGTTTGTGAAGCTCATTCTAAGGCACCAAAGGTTATTGTTTCTGGTCTGGAGCGCCGTTTTTGCCAACAGTGTAGTCGGTTTCATGGTTTAGCTGAATTTGACCAGAAAAAGAAAAGTTGCCGCAGGCGTCTATCTGATCATAATGCACGAAGAAGGAAACCGCAACAAGAGGCAATTTCATTTGGTTCATCAAGGCTCGCCACGATGTTTTACGATGCAAGGCAGCAGACAGATATTTACTTTGGCCAATCTCCTTTTGGCCAAGTGAGAAGCAATGCAATTTCTTCATGTGACAACCTGGGAGGCTTCAAATTTACAGAAGCAAAACTCCCCTGGATGAAGCCAATGAAAACTATAGGCCTTGAGGATCTGAATTTCTCTACCCTGCAGATGCCAGGCAATGTTGTGTCGCATACGGTGCATCATCATGATTTTGATGGGCTCATACCATTCAAGGGAAACACCCCGAAGGTCCTCAACCAAGGTGTGGATCCAGCCTGTGCCGTCGTGTCCTCCAACTCGAATGGAGCCCCGGATCTTCGGCGTGCTCTCTCTCTTCTGTCAAGCGATTCCTGGGGCCCGGCCGACGTTCAGGCCGGCTCCCAGGTGCATCCCGGTGGAGTGATGCCGCCCCTCGCCGTTGCCGCCGCCACCGTCACCGCCCCGACGAACCCTGTCAGTGTGATGCATGCTCTGCACCCGTCCACCGGAGGAGGAGGATTCTGGCAAGACGGCGACGACCCGCCTCCGCTCGATCATGCCTCGCAGGCTCAGGCGTTCATGCATCCTGGCAATGGCAGCAGCTCCGGCTATGGCCATCTGCACTGATTCTGCTGCATCTATTTGGAACGGGTTGATGGCTGGTTACTCCGTTCATGATCTTACCCTGTCAGTGATGGACTCTGAATAATTTGGGGGCGAATTGTCCTGCAACCCCAGGATTTATTATTTCTATTTTTGAAACCAAACCACCAGGATATTTGCCATTGGATGAGAAGTGTTCATGATCATGAAATGATCTGTTTTGTTCCACAGAATCTGACATATCTACTACTCGTCTTGGGAATGAGCTGAGATCGATTCGTGTGTTG]
[+] EMBL AK102136 [TCAAATCAAGCAAAGCACCACTGCTGCTGCAAAGAACACCAGATAGATCAAACTCTCTCTCTCTCTGGTGTTGCTGTTAGTTGGTAGTTTGGTACTACTTGGTACTCTGGGAAGAAGAAAGAGATTATTATAGCAGAAAAGCAGCACCATGGCATAGCTCCAGGCAGCAAAACCAGAATACAACGGGGATAACGATTCTCTCTCAGCTAAAGGAGGTCGGGGAAACAAGTGGGATAGGATCTCTCTCAAGTCGAGGTGAGTGAGAACTCAGCCAAGAACAACAATGGAGTCTCTGTTGCTTTAGTTCTGCCAGCCAATTGGTTTCAACTTTCAACGCTGCTACTTGTTATTCATCACCTCCTCGGATCGGTTTGATTTATGCTCAAGGTTGTGCTATGCATGGTCATGCTGATTGAGGGCAAGATTTGCAGGGAGAGGAAGGATCCACTGTGTTTCTTTTCTGGGAGAAAGGAAAGTTGAGATTTGCAATATATACAAGTGTGAGCAGCAGCAGTTGAGATCCTTAATTCAGCCATGGCTTCTTTTGGGATGAACTGGAATCAGAAGAGCCCTGTGTTTTGGGACTGGGAAAATCCAGCGCCTTTCGGTCCGAATACAATGGAAAATCCCAAGAGCATACCTCACCCTGAACCAAGAGGTGTAGTTGTCGCGGCCGCAAATCATGGATCCACCAATTCATCCGGTGGCACGTTCACTTCTAGCTCGGAGCTAGCCAATGGTTCATCGAAGAGCTCCTTGTCAGCGTCGTTCGATTCCTCATCCAAGCTGGGGAACAGCTTAGAGTTCAGGTTTGCTTCTGTCAAAGGGCATGGCAAGAACATGTGCAAGGATGGCGAGGCCGGTAGAGTTGAAGACTCGGGCACTTCTCCAGCTGTGGCAGTTAGCCATGGTGAGCCGGTAATAGGACTCAAGTTAGGGAAGAGAACTTACTTTGAAAATGTTTGTGGAGGGCAGAATGTCAAGAGCTCCTCTGCAGCTTCAGGTGTGACTTGTCCATCTACTGTGGTCAAGAAGATGAAGGTGTCTCAGCAGAGCACACAAAGCTCATACTGCCAAGTTGAAGGCTGCAAAGTCGATCTGTCCTCCGCAAGAGAATACCATCGCAAGCACAAAGTTTGTGAAGCTCATTCTAAGGCACCAAAGGTTATTGTTTCTGGTCTGGAGCGCCGTTTTTGCCAACAGTGTAGTCGGTTTCATGGTTTAGCTGAATTTGACCAGAAAAAGAAAAGTTGCCGCAGGCGTCTATCTGATCATAATGCACGAAGAAGGAAACCGCAACAAGAGGCAATTTCATTTGGTTCATCAAGGCTCGCCACGATGTTTTACGATGCAAGGCAGCAGACAGATATTTACTTTGGCCAATCTCCTTTTGGCCAAGTGAGAAGCAATGCAATTTCTTCATGTGACAACCTGGGAGGCTTCAAATTTACAGAAGCAAAACTCCCCTGGATGAAGCCAATGAAAACTATAGGCCTTGAGGATCTGAATTTCTCTACCCTGCAGATGCCAGGCAATGTTGTGTCGCATACGGTGCATCATCATGATTTTGATGGGCTCATACCATTCAAGGGAAACACCCCGAAGGTCCTCAACCAAGGTGTGGATCCAGCCTGTGCCGTCGTGTCCTCCAACTCGAATGGAGCCCCGGATCTTCGGCGTGCTCTCTCTCTTCTGTCAAGCGATTCCTGGGGCCCGGCCGACGTTCAGGCCGGCTCCCAGGTGCATCCCGGTGGAGTGATGCCGCCCCTCGCCGTTGCCGCCGCCACCGTCACCGCCCCGACGAACCCTGTCAGTGTGATGCATGCTCTGCACCCGTCCACCGGAGGAGGAGGATTCTGGCAAGACGGCGACGACCCGCCTCCGCTCGATCATGCCTCGCAGGCTCAGGCGTTCATGCATCCTGGCAATGGCAGCAGCTCCGGCTATGGCCATCTGCACTGATTCTGCTGCATCTATTTGGAACGGGTTGATGGCTGGTTACTCCGTTCATGATCTTACCCTGTCAGTGATGGACTCTGAATAATTTGGGGGCGAATTGTCCTGCAACCCCAGGATTTATTATTTCTATTTTTGAAACCAAACCACCAGGATATTTGCCATTGGATGAGAAGTGTTCATGATCATGAAATGATCTGTTTTGTTCCACAGAATCTGACATATCTACTACTCGTCTTGGGAATGAGCTGAGATCGATTCGTGTGTTG]
consensusID : consensus_10105#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence
[CCACTGCTGCTGCAAAGAACACCAGATAGATCAAACTCTCTCTCTCTCTGGTGTTGCTGTTAGTTGGTAGTTTGGTACTACTTGGTACTCTGGGAAGAAGAAAGAGATTATTATAGCAGAAAAGCAGCACCATGGCATAGCTCCAGGCAGCAAAACCAGGTAGAATACAACGGGGATAACGATTCTCTCTCAGCTAAAGGAGATGCAAGGCAGCAGACAGATATTTACTTTGGCCAATCTCCTTTTGGCCAAGTGAGAAGCAATGCAATTTCTTCATGTGACAACCTGGGAGGCTTCAAATTTACAGAAGCAAAACTCCCCTGGATGAAGCCAATGAAAACTATAGGCCTTGAGGATCTGAATTTCTCTACCCTGCAGATGCCAGGCAATGTTGTNTCGCATACGGTGCATCATCATGATTTTGATGGGCTC]
[+] EMBL OSR18831A [CCACTGCTGCTGCAAAGAACACCAGATAGATCAAACTCTCTCTCTCTCTGGTGTTGCTGTTAGTTGGTAGTTTGGTACTACTTGGTACTCTGGGAAGAAGAAAGAGATTATTATAGCAGAAAAGCAGCACCATGGCATAGCTCCAGGCAGCAAAACCAGGTAGAATACAACGGGGATAACGATTCTCTCTCAGCTAAAGGAGATGCAAGGCAGCAGACAGATATTTACTTTGGCCAATCTCCTTTTGGCCAAGTGAGAAGCAATGCAATTTCTTCATGTGACAACCTGGGAGGCTTCAAATTTACAGAAGCAAAACTCCCCTGGATGAAGCCAATGAAAACTATAGGCCTTGAGGATCTGAATTTCTCTACCCTGCAGATGCCAGGCAATGTTGTNTCGCATACGGTGCATCATCATGATTTTGATGGGCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10105#0 TACTCACTACACTACCAGTTGGTGTTTGTTCTGAGCATTATTGGAGTGTCAGGGAAGGGC 60
consensus_10105#1 ------------------------------------------------------------
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 ATGTGCTTTTGTTGGTTGCTGTAGGAGGAGGCAGCCATCCACTGGGCCTCACTCTCCTCT 120
consensus_10105#1 ------------------------------------------------------------
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 TGTTGCTGCCTCCTCCTCTTGTTACTGTTCAGTCTCAGGCTCTCAGGCTCACAGGTGGGG 180
consensus_10105#1 ------------------------------------------------------------
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 TTTTGGGAGATACTAGTTAGGAGGGAAAGGTTGCCATCTTGTGTGTGTTGGATCTTTAAT 240
consensus_10105#1 ------------------------------------------------------------
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 ACAACGGGGATAACGATTCTCTCTCAGCTAAAGGAGGTGAGATTCTTGGTTTCACATCAA 300
consensus_10105#1 ------------------------------------------------------------
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 GTATTATTGTTCTTTCTTTTACTTCCTTCAAAATAGTTTCTTTGCTTTTTATTTCAT-AT 359
consensus_10105#1 ------------------TCAAATCAAGCAAAGCACCACTGCTGCTGCAAAGAACACCAG 42
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 ATGGTTTGGTTTATTTATGCTCCCCAACAAGCAACTGGTTCATGTGCGGTAACAAGGAGC 419
consensus_10105#1 ATAGATCAAACTCTCTCTCTCTCTGGTGTTGCTGTTAGTT-------GGTAGTTTGGTAC 95
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 AAATAATGCAGCTCTGATTGACTTGGGGTAGTTGTTGTGGTGATAGATTGGAAAGGGTTT 479
consensus_10105#1 TACT--TGGTACTCTGGGAAGAAGAAAGAGATTATTATAGCAGAAAAGCAGCACCA--TG 151
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 AAATAGCGGGTGGTTGTGGTGATGAATGGGGGCCAGCCTTGATGGGGTTGATGCTGTCGT 539
consensus_10105#1 GCATAGCTCCAGGCAGCAA----AACCAGAATACAACGGGGATAACGATTCT-CTCTCAG 206
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 CTTTT--AGGTCGGGGAAACAAGTGGGATAGGATCTCCCTCAAGTCGAGGTGAGTGAGAA 597
consensus_10105#1 CTAAAGGAGGTCGGGGAAACAAGTGGGATAGGATCTCTCTCAAGTCGAGGTGAGTGAGAA 266
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 CTCAGCCAAGAACAACAATGGAGTCTCTGTTGCTTTAGTTCTGCCAGCCAATTGGTTTCA 657
consensus_10105#1 CTCAGCCAAGAACAACAATGGAGTCTCTGTTGCTTTAGTTCTGCCAGCCAATTGGTTTCA 326
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 ACTTTCAACGCTGCTACTTGTTATTCATCACCTCCTCGGATCGGTTTGATTTATGCTCAA 717
consensus_10105#1 ACTTTCAACGCTGCTACTTGTTATTCATCACCTCCTCGGATCGGTTTGATTTATGCTCAA 386
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 GGTTGTGCTATGCATGGTCATGCTGATTGAGGGCAAGATTTGCAGGGAGAGGAAGGATCC 777
consensus_10105#1 GGTTGTGCTATGCATGGTCATGCTGATTGAGGGCAAGATTTGCAGGGAGAGGAAGGATCC 446
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 ACTGTGTTTCTTTTCTGGGAGAAAGGAAAGTTGAGATTTGCAATATATACAAGTGTGAGC 837
consensus_10105#1 ACTGTGTTTCTTTTCTGGGAGAAAGGAAAGTTGAGATTTGCAATATATACAAGTGTGAGC 506
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 AGCAGCAGTTGAGATCCTTAATTCAGCCATGGCTTCTTTTGGGATGAACTGGAATCAGAA 897
consensus_10105#1 AGCAGCAGTTGAGATCCTTAATTCAGCCATGGCTTCTTTTGGGATGAACTGGAATCAGAA 566
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 GAGCCCTGTGTTTTGGGACTGGGAAAATCCAGCGCCTTTCGGTCCGAATACAATGGAAAA 957
consensus_10105#1 GAGCCCTGTGTTTTGGGACTGGGAAAATCCAGCGCCTTTCGGTCCGAATACAATGGAAAA 626
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 TCCCAAGAGCATACCTCACCCTGAACCAAGAGGTGTAGTTGTCGCGGCCGCAAATCATGG 1017
consensus_10105#1 TCCCAAGAGCATACCTCACCCTGAACCAAGAGGTGTAGTTGTCGCGGCCGCAAATCATGG 686
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 ATCCACCAATTCATCCGGTGGCACGTTCACTTCTAGCTCGGAGCTAGCCAATGGTTCATC 1077
consensus_10105#1 ATCCACCAATTCATCCGGTGGCACGTTCACTTCTAGCTCGGAGCTAGCCAATGGTTCATC 746
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 GAAGAGCTCCTTGTCAGCGTCGTTCGATTCCTCATCCAAGCTGGGGAACAGCTTAGAGTT 1137
consensus_10105#1 GAAGAGCTCCTTGTCAGCGTCGTTCGATTCCTCATCCAAGCTGGGGAACAGCTTAGAGTT 806
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 CAGGTTTGCTTCTGTCAAAGGGCATGGCAAGAACATGTGCAAGGATGGCGAGGCCGGTAG 1197
consensus_10105#1 CAGGTTTGCTTCTGTCAAAGGGCATGGCAAGAACATGTGCAAGGATGGCGAGGCCGGTAG 866
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 AGTTGAAGACTCGGGCACTTCTCCAGCTGTGGCAGTTAGCCATGGTGAGCCGGTAATAGG 1257
consensus_10105#1 AGTTGAAGACTCGGGCACTTCTCCAGCTGTGGCAGTTAGCCATGGTGAGCCGGTAATAGG 926
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 ACTCAAGTTAGGGAAGAGAACTTACTTTGAAAATGTTTGTGGAGGGCAGAATGTCAAGAG 1317
consensus_10105#1 ACTCAAGTTAGGGAAGAGAACTTACTTTGAAAATGTTTGTGGAGGGCAGAATGTCAAGAG 986
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 CTCCTCTGCAGCTTCAGGTGTGACTTGTCCATCTACTGTGGTCAAGAAGATGAAGGTGTC 1377
consensus_10105#1 CTCCTCTGCAGCTTCAGGTGTGACTTGTCCATCTACTGTGGTCAAGAAGATGAAGGTGTC 1046
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 TCAGCAGAGCACACAAAGCTCATACTGCCAAGTTGAAGGCTGCAAAGTCGATCTGTCCTC 1437
consensus_10105#1 TCAGCAGAGCACACAAAGCTCATACTGCCAAGTTGAAGGCTGCAAAGTCGATCTGTCCTC 1106
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 CGCAAGAGAATACCATCGCAAGCACAAAGTTTGTGAAGCTCATTCTAAGGCACCAAAGGT 1497
consensus_10105#1 CGCAAGAGAATACCATCGCAAGCACAAAGTTTGTGAAGCTCATTCTAAGGCACCAAAGGT 1166
consensus_10105#2 ---------------------CCACTGCTGCTGCAAAGAACACCAGATAGATCAAACTCT 39
*** ** *** ** * * * ** *
consensus_10105#0 TATTGTTTCTGGTCTGGAGCGCCGTTTTTGCCAACAGTGTAGTCGGTTTCATGGTTTAGC 1557
consensus_10105#1 TATTGTTTCTGGTCTGGAGCGCCGTTTTTGCCAACAGTGTAGTCGGTTTCATGGTTTAGC 1226
consensus_10105#2 CTCTCTCTCTGGTGT----TGCTGTT--AGTTGGTAGTTTGGT--ACTACTTGGT----- 86
* * ****** * ** *** * *** * ** * * ****
consensus_10105#0 TGAATTTGACCAGAAAAAGAAAAGTTGCCGCAGGCGTCTATCTGATCATAATGCACGAAG 1617
consensus_10105#1 TGAATTTGACCAGAAAAAGAAAAGTTGCCGCAGGCGTCTATCTGATCATAATGCACGAAG 1286
consensus_10105#2 --ACTCTGGGAAGAAGAA-AGAGATTATTATAGCAGAAAAGCAG--CACCATG-GCATAG 140
* * ** **** ** * * ** ** * * * * ** *** * **
consensus_10105#0 AAGGAAACCGCAACAAGAGGCA-ATTTCATTTGGTTCATCAAGGCTCGCCACGATGTTTT 1676
consensus_10105#1 AAGGAAACCGCAACAAGAGGCA-ATTTCATTTGGTTCATCAAGGCTCGCCACGATGTTTT 1345
consensus_10105#2 CTCCAGGCAGCAAAACCAGGTAGAATACAACGGGGATAACGATTCTCTCTCAGCTAAAGG 200
* * **** * *** * * * ** ** * * * *** * * *
consensus_10105#0 ACGATGCAAGGCAGCAGACAGATATTTACTTTGGCCAATCTCCTTTTGGCCAAGTGAGAA 1736
consensus_10105#1 ACGATGCAAGGCAGCAGACAGATATTTACTTTGGCCAATCTCCTTTTGGCCAAGTGAGAA 1405
consensus_10105#2 A-GATGCAAGGCAGCAGACAGATATTTACTTTGGCCAATCTCCTTTTGGCCAAGTGAGAA 259
* **********************************************************
consensus_10105#0 GCAATGCAATTTCTTCATGTGACAACCTGGGAGGCTTCAAATTTACAGAAGCAAAACTCC 1796
consensus_10105#1 GCAATGCAATTTCTTCATGTGACAACCTGGGAGGCTTCAAATTTACAGAAGCAAAACTCC 1465
consensus_10105#2 GCAATGCAATTTCTTCATGTGACAACCTGGGAGGCTTCAAATTTACAGAAGCAAAACTCC 319
************************************************************
consensus_10105#0 CCTGGATGAAGCCAATGAAAACTATAGGCCTTGAGGATCTGAATTTCTCTACCCTGCAGA 1856
consensus_10105#1 CCTGGATGAAGCCAATGAAAACTATAGGCCTTGAGGATCTGAATTTCTCTACCCTGCAGA 1525
consensus_10105#2 CCTGGATGAAGCCAATGAAAACTATAGGCCTTGAGGATCTGAATTTCTCTACCCTGCAGA 379
************************************************************
consensus_10105#0 TGCCAGGCAATGTTGTGTCGCATACGGTGCATCATCATGATTTTGATGGGCTCATACCAT 1916
consensus_10105#1 TGCCAGGCAATGTTGTGTCGCATACGGTGCATCATCATGATTTTGATGGGCTCATACCAT 1585
consensus_10105#2 TGCCAGGCAATGTTGTNTCGCATACGGTGCATCATCATGATTTTGATGGGCTC------- 432
**************** ************************************
consensus_10105#0 TCAAGGGAAACACCCCGAAGGTCCTCAACCAAGGTGTGGATCCAGCCTGTGCCGTCGTGT 1976
consensus_10105#1 TCAAGGGAAACACCCCGAAGGTCCTCAACCAAGGTGTGGATCCAGCCTGTGCCGTCGTGT 1645
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 CCTCCAACTCGAATGGAGCCCCGGATCTTCGGCGTGCTCTCTCTCTTCTGTCAAGCGATT 2036
consensus_10105#1 CCTCCAACTCGAATGGAGCCCCGGATCTTCGGCGTGCTCTCTCTCTTCTGTCAAGCGATT 1705
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 CCTGGGGCCCGGCCGACGTTCAGGCCGGCTCCCAGGTGCATCCCGGTGGAGTGATGCCGC 2096
consensus_10105#1 CCTGGGGCCCGGCCGACGTTCAGGCCGGCTCCCAGGTGCATCCCGGTGGAGTGATGCCGC 1765
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 CCCTCGCCGTTGCCGCCGCCACCGTCACCGCCCCGACGAACCCTGTCAGTGTGATGCATG 2156
consensus_10105#1 CCCTCGCCGTTGCCGCCGCCACCGTCACCGCCCCGACGAACCCTGTCAGTGTGATGCATG 1825
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 CTCTGCACCCGTCCACCGGAGGAGGAGGATTCTGGCAAGACGGCGACGACCCGCCTCCGC 2216
consensus_10105#1 CTCTGCACCCGTCCACCGGAGGAGGAGGATTCTGGCAAGACGGCGACGACCCGCCTCCGC 1885
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 TCGATCATGCCTCGCAGGCTCAGGCGTTCATGCATCCTGGCAATGGCAGCAGCTCCGGCT 2276
consensus_10105#1 TCGATCATGCCTCGCAGGCTCAGGCGTTCATGCATCCTGGCAATGGCAGCAGCTCCGGCT 1945
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 ATGGCCATCTGCACTGATTCTGCTGCATCTATTTGGAACGGGTTGATGACTGGTTACTCC 2336
consensus_10105#1 ATGGCCATCTGCACTGATTCTGCTGCATCTATTTGGAACGGGTTGATGGCTGGTTACTCC 2005
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 GTTCATGATCTTACCCTGTCAGTGATGGACTCTGAATAATTTGGGGGCGAATTGTCCTGC 2396
consensus_10105#1 GTTCATGATCTTACCCTGTCAGTGATGGACTCTGAATAATTTGGGGGCGAATTGTCCTGC 2065
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 AACCCCAGGATTTATTATTTCTATTTTTGAAACCAAACCACCAGGATATTTGCCATTGGA 2456
consensus_10105#1 AACCCCAGGATTTATTATTTCTATTTTTGAAACCAAACCACCAGGATATTTGCCATTGGA 2125
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 TGAGAAGTGTTCATGATCATGAAATGATCTGTTTTGTTCAAAAAAAAAAAAAAAAAAAAA 2516
consensus_10105#1 TGAGAAGTGTTCATGATCATGAAATGATCTGTTTTGTTCCACAGAATCTGACATATCTAC 2185
consensus_10105#2 ------------------------------------------------------------
consensus_10105#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--- 2553
consensus_10105#1 TACTCGTCTTGGGAATGAGCTGAGATCGATTCGTGTGTTG 2225
consensus_10105#2 ----------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||