These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10105#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2553 fasta sequence [TACTCACTACACTACCAGTTGGTGTTTGTTCTGAGCATTATTGGAGTGTCAGGGAAGGGCATGTGCTTTTGTTGGTTGCTGTAGGAGGAGGCAGCCATCCACTGGGCCTCACTCTCCTCTTGTTGCTGCCTCCTCCTCTTGTTACTGTTCAGTCTCAGGCTCTCAGGCTCACAGGTGGGGTTTTGGGAGATACTAGTTAGGAGGGAAAGGTTGCCATCTTGTGTGTGTTGGATCTTTAATACAACGGGGATAACGATTCTCTCTCAGCTAAAGGAGGTGAGATTCTTGGTTTCACATCAAGTATTATTGTTCTTTCTTTTACTTCCTTCAAAATAGTTTCTTTGCTTTTTATTTCATATATGGTTTGGTTTATTTATGCTCCCCAACAAGCAACTGGTTCATGTGCGGTAACAAGGAGCAAATAATGCAGCTCTGATTGACTTGGGGTAGTTGTTGTGGTGATAGATTGGAAAGGGTTTAAATAGCGGGTGGTTGTGGTGATGAATGGGGGCCAGCCTTGATGGGGTTGATGCTGTCGTCTTTTAGGTCGGGGAAACAAGTGGGATAGGATCTCCCTCAAGTCGAGGTGAGTGAGAACTCAGCCAAGAACAACAATGGAGTCTCTGTTGCTTTAGTTCTGCCAGCCAATTGGTTTCAACTTTCAACGCTGCTACTTGTTATTCATCACCTCCTCGGATCGGTTTGATTTATGCTCAAGGTTGTGCTATGCATGGTCATGCTGATTGAGGGCAAGATTTGCAGGGAGAGGAAGGATCCACTGTGTTTCTTTTCTGGGAGAAAGGAAAGTTGAGATTTGCAATATATACAAGTGTGAGCAGCAGCAGTTGAGATCCTTAATTCAGCCATGGCTTCTTTTGGGATGAACTGGAATCAGAAGAGCCCTGTGTTTTGGGACTGGGAAAATCCAGCGCCTTTCGGTCCGAATACAATGGAAAATCCCAAGAGCATACCTCACCCTGAACCAAGAGGTGTAGTTGTCGCGGCCGCAAATCATGGATCCACCAATTCATCCGGTGGCACGTTCACTTCTAGCTCGGAGCTAGCCAATGGTTCATCGAAGAGCTCCTTGTCAGCGTCGTTCGATTCCTCATCCAAGCTGGGGAACAGCTTAGAGTTCAGGTTTGCTTCTGTCAAAGGGCATGGCAAGAACATGTGCAAGGATGGCGAGGCCGGTAGAGTTGAAGACTCGGGCACTTCTCCAGCTGTGGCAGTTAGCCATGGTGAGCCGGTAATAGGACTCAAGTTAGGGAAGAGAACTTACTTTGAAAATGTTTGTGGAGGGCAGAATGTCAAGAGCTCCTCTGCAGCTTCAGGTGTGACTTGTCCATCTACTGTGGTCAAGAAGATGAAGGTGTCTCAGCAGAGCACACAAAGCTCATACTGCCAAGTTGAAGGCTGCAAAGTCGATCTGTCCTCCGCAAGAGAATACCATCGCAAGCACAAAGTTTGTGAAGCTCATTCTAAGGCACCAAAGGTTATTGTTTCTGGTCTGGAGCGCCGTTTTTGCCAACAGTGTAGTCGGTTTCATGGTTTAGCTGAATTTGACCAGAAAAAGAAAAGTTGCCGCAGGCGTCTATCTGATCATAATGCACGAAGAAGGAAACCGCAACAAGAGGCAATTTCATTTGGTTCATCAAGGCTCGCCACGATGTTTTACGATGCAAGGCAGCAGACAGATATTTACTTTGGCCAATCTCCTTTTGGCCAAGTGAGAAGCAATGCAATTTCTTCATGTGACAACCTGGGAGGCTTCAAATTTACAGAAGCAAAACTCCCCTGGATGAAGCCAATGAAAACTATAGGCCTTGAGGATCTGAATTTCTCTACCCTGCAGATGCCAGGCAATGTTGTGTCGCATACGGTGCATCATCATGATTTTGATGGGCTCATACCATTCAAGGGAAACACCCCGAAGGTCCTCAACCAAGGTGTGGATCCAGCCTGTGCCGTCGTGTCCTCCAACTCGAATGGAGCCCCGGATCTTCGGCGTGCTCTCTCTCTTCTGTCAAGCGATTCCTGGGGCCCGGCCGACGTTCAGGCCGGCTCCCAGGTGCATCCCGGTGGAGTGATGCCGCCCCTCGCCGTTGCCGCCGCCACCGTCACCGCCCCGACGAACCCTGTCAGTGTGATGCATGCTCTGCACCCGTCCACCGGAGGAGGAGGATTCTGGCAAGACGGCGACGACCCGCCTCCGCTCGATCATGCCTCGCAGGCTCAGGCGTTCATGCATCCTGGCAATGGCAGCAGCTCCGGCTATGGCCATCTGCACTGATTCTGCTGCATCTATTTGGAACGGGTTGATGACTGGTTACTCCGTTCATGATCTTACCCTGTCAGTGATGGACTCTGAATAATTTGGGGGCGAATTGTCCTGCAACCCCAGGATTTATTATTTCTATTTTTGAAACCAAACCACCAGGATATTTGCCATTGGATGAGAAGTGTTCATGATCATGAAATGATCTGTTTTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK073179 [TACTCACTACACTACCAGTTGGTGTTTGTTCTGAGCATTATTGGAGTGTCAGGGAAGGGCATGTGCTTTTGTTGGTTGCTGTAGGAGGAGGCAGCCATCCACTGGGCCTCACTCTCCTCTTGTTGCTGCCTCCTCCTCTTGTTACTGTTCAGTCTCAGGCTCTCAGGCTCACAGGTGGGGTTTTGGGAGATACTAGTTAGGAGGGAAAGGTTGCCATCTTGTGTGTGTTGGATCTTTAATACAACGGGGATAACGATTCTCTCTCAGCTAAAGGAGGTGAGATTCTTGGTTTCACATCAAGTATTATTGTTCTTTCTTTTACTTCCTTCAAAATAGTTTCTTTGCTTTTTATTTCATATATGGTTTGGTTTATTTATGCTCCCCAACAAGCAACTGGTTCATGTGCGGTAACAAGGAGCAAATAATGCAGCTCTGATTGACTTGGGGTAGTTGTTGTGGTGATAGATTGGAAAGGGTTTAAATAGCGGGTGGTTGTGGTGATGAATGGGGGCCAGCCTTGATGGGGTTGATGCTGTCGTCTTTTAGGTCGGGGAAACAAGTGGGATAGGATCTCCCTCAAGTCGAGGTGAGTGAGAACTCAGCCAAGAACAACAATGGAGTCTCTGTTGCTTTAGTTCTGCCAGCCAATTGGTTTCAACTTTCAACGCTGCTACTTGTTATTCATCACCTCCTCGGATCGGTTTGATTTATGCTCAAGGTTGTGCTATGCATGGTCATGCTGATTGAGGGCAAGATTTGCAGGGAGAGGAAGGATCCACTGTGTTTCTTTTCTGGGAGAAAGGAAAGTTGAGATTTGCAATATATACAAGTGTGAGCAGCAGCAGTTGAGATCCTTAATTCAGCCATGGCTTCTTTTGGGATGAACTGGAATCAGAAGAGCCCTGTGTTTTGGGACTGGGAAAATCCAGCGCCTTTCGGTCCGAATACAATGGAAAATCCCAAGAGCATACCTCACCCTGAACCAAGAGGTGTAGTTGTCGCGGCCGCAAATCATGGATCCACCAATTCATCCGGTGGCACGTTCACTTCTAGCTCGGAGCTAGCCAATGGTTCATCGAAGAGCTCCTTGTCAGCGTCGTTCGATTCCTCATCCAAGCTGGGGAACAGCTTAGAGTTCAGGTTTGCTTCTGTCAAAGGGCATGGCAAGAACATGTGCAAGGATGGCGAGGCCGGTAGAGTTGAAGACTCGGGCACTTCTCCAGCTGTGGCAGTTAGCCATGGTGAGCCGGTAATAGGACTCAAGTTAGGGAAGAGAACTTACTTTGAAAATGTTTGTGGAGGGCAGAATGTCAAGAGCTCCTCTGCAGCTTCAGGTGTGACTTGTCCATCTACTGTGGTCAAGAAGATGAAGGTGTCTCAGCAGAGCACACAAAGCTCATACTGCCAAGTTGAAGGCTGCAAAGTCGATCTGTCCTCCGCAAGAGAATACCATCGCAAGCACAAAGTTTGTGAAGCTCATTCTAAGGCACCAAAGGTTATTGTTTCTGGTCTGGAGCGCCGTTTTTGCCAACAGTGTAGTCGGTTTCATGGTTTAGCTGAATTTGACCAGAAAAAGAAAAGTTGCCGCAGGCGTCTATCTGATCATAATGCACGAAGAAGGAAACCGCAACAAGAGGCAATTTCATTTGGTTCATCAAGGCTCGCCACGATGTTTTACGATGCAAGGCAGCAGACAGATATTTACTTTGGCCAATCTCCTTTTGGCCAAGTGAGAAGCAATGCAATTTCTTCATGTGACAACCTGGGAGGCTTCAAATTTACAGAAGCAAAACTCCCCTGGATGAAGCCAATGAAAACTATAGGCCTTGAGGATCTGAATTTCTCTACCCTGCAGATGCCAGGCAATGTTGTGTCGCATACGGTGCATCATCATGATTTTGATGGGCTCATACCATTCAAGGGAAACACCCCGAAGGTCCTCAACCAAGGTGTGGATCCAGCCTGTGCCGTCGTGTCCTCCAACTCGAATGGAGCCCCGGATCTTCGGCGTGCTCTCTCTCTTCTGTCAAGCGATTCCTGGGGCCCGGCCGACGTTCAGGCCGGCTCCCAGGTGCATCCCGGTGGAGTGATGCCGCCCCTCGCCGTTGCCGCCGCCACCGTCACCGCCCCGACGAACCCTGTCAGTGTGATGCATGCTCTGCACCCGTCCACCGGAGGAGGAGGATTCTGGCAAGACGGCGACGACCCGCCTCCGCTCGATCATGCCTCGCAGGCTCAGGCGTTCATGCATCCTGGCAATGGCAGCAGCTCCGGCTATGGCCATCTGCACTGATTCTGCTGCATCTATTTGGAACGGGTTGATGACTGGTTACTCCGTTCATGATCTTACCCTGTCAGTGATGGACTCTGAATAATTTGGGGGCGAATTGTCCTGCAACCCCAGGATTTATTATTTCTATTTTTGAAACCAAACCACCAGGATATTTGCCATTGGATGAGAAGTGTTCATGATCATGAAATGATCTGT ] [+] EMBL AK061641 [ TTCGGTCCGAATACAATGGAAAATCCCAAGAGCATACCTCACCCTGAACCAAGAGGTGTAGTTGTCGCGGCCGCAAATCATGGATCCACCAATTCATCCGGTGGCACGTTCACTTCTAGCTCGGAGCTAGCCAATGGTTCATCGAAGAGCTCCTTGTCAGCGTCGTTCGATTCCTCATCCAAGCTGGGGAACAGCTTAGAGTTCAGGTTTGCTTCTGTCAAAGGGCATGGCAAGAACATGTGCAAGGATGGCGAGGCCGGTAGAGTTGAAGACTCGGGCACTTCTCCAGCTGTGGCAGTTAGCCATGGTGAGCCGGTAATAGGACTCAAGTTAGGGAAGAGAACTTACTTTGAAAATGTTTGTGGAGGGCAGAATGTCAAGAGCTCCTCTGCAGCTTCAGGTGTGACTTGTCCATCTACTGTGGTCAAGAAGATGAAGGTGTCTCAGCAGAGCACACAAAGCTCATACTGCCAAGTTGAAGGCTGCAAAGTCGATCTGTCCTCCGCAAGAGAATACCATCGCAAGCACAAAGTTTGTGAAGCTCATTCTAAGGCACCAAAGGTTATTGTTTCTGGTCTGGAGCGCCGTTTTTGCCAACAGTGTAGTCGGTTTCATGGTTTAGCTGAATTTGACCAGAAAAAGAAAAGTTGCCGCAGGCGTCTATCTGATCATAATGCACGAAGAAGGAAACCGCAACAAGAGGCAATTTCATTTGGTTCATCAAGGCTCGCCACGATGTTTTACGATGCAAGGCAGCAGACAGATATTTACTTTGGCCAATCTCCTTTTGGCCAAGTGAGAAGCAATGCAATTTCTTCATGTGACAACCTGGGAGGCTTCAAATTTACAGAAGCAAAACTCCCCTGGATGAAGCCAATGAAAACTATAGGCCTTGAGGATCTGAATTTCTCTACCCTGCAGATGCCAGGCAATGTTGTGTCGCATACGGTGCATCATCATGATTTTGATGGGCTCATACCATTCAAGGGAAACACCCCGAAGGTCCTCAACCAAGGTGTGGATCCAGCCTGTGCCGTCGTGTCCTCCAACTCGAATGGAGCCCCGGATCTTCGGCGTGCTCTCTCTCTTCTGTCAAGCGATTCCTGGGGCCCGGCCGACGTTCAGGCCGGCTCCCAGGTGCATCCCGGTGGAGTGATGCCGCCCCTCGCCGTTGCCGCCGCCACCGTCACCGCCCCGACGAACCCTGTCAGTGTGATGCATGCTCTGCACCCGTCCACCGGAGGAGGAGGATTCTGGCAAGACGGCGACGACCCGCCTCCGCTCGATCATGCCTCGCAGGCTCAGGCGTTCATGCATCCTGGCAATGGCAGCAGCTCCGGCTATGGCCATCTGCACTGATTCTGCTGCATCTATTTGGAACGGGTTGATGACTGGTTACTCCGTTCATGATCTTACCCTGTCAGTGATGGACTCTGAATAATTTGGGGGCGAATTGTCCTGCAACCCCAGGATTTATTATTTCTATTTTTGAAACCAAACCACCAGGATATTTGCCATTGGATGAGAAGTGTTCATGATCATGAAATGATCT ] [+] EMBL AU070834 [ GATTCTGGCAAGACGGCGACGACCCGCCTCCGCTCGATCATGCCTCGCAGGCTCAGGCGTTAATGCATCCTGGCAATGGCAGCAGCTCCGGCTATGGCCATCTGCACTGATTCTGCTGCATCTATTTGGAACGGGTTGATGACTGGTTACTCCGTTCATGATCTTACCCTGTCAGTGATGGACTCTGAATAATTTGGGGGCGAATTGTCCTGCAACCCCAGGATTTATTATTTCTATTTTTGAAACCAAACCACCAGGATATTTGCCATTGGATGAGAAGTGTTCATGATCATGAAATGATCTGTTTTGTTCAAAAA ] [+] EMBL AU183853 [ CTCGCAGGCTCAGGCGTTCATGCATCCTGGCAATGGCAGCAGCTCCGGCTATGGCCATCTGCACTGATTCTGCTGCATCTATTTGGAACGGGTTGATGACTGGTTACTCCGTTCATGATCTTACCCTGTCAGTGATGGACTCTGAATAATTTGGGGGCGAATTGTCCTGCAACCCCAGGATTTATTATTTCTATTTTTGAAACCAAACCACCAGGATATTTGCCATTGGATGAGAAGTGTTCATGATCATGAAATGATCTGTTTTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL AU164324 [ TCTGCTGCATCTATTTGGAACGGGTTGATGACTGGTTACNCCGTTCATGATNTTNCCCTGTCAGTGATGGACTCTGAATAATTTGGGGGCGAATTNTCCTGCAACCCCAGGATTTATTATTTCTATTTTTGAAACCAAACCNCCAGGATATTTGCCATTGGATGAGAAGTGTTCATGATCATGAAATGATCTGTTTTGTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_10105#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2225 fasta sequence [TCAAATCAAGCAAAGCACCACTGCTGCTGCAAAGAACACCAGATAGATCAAACTCTCTCTCTCTCTGGTGTTGCTGTTAGTTGGTAGTTTGGTACTACTTGGTACTCTGGGAAGAAGAAAGAGATTATTATAGCAGAAAAGCAGCACCATGGCATAGCTCCAGGCAGCAAAACCAGAATACAACGGGGATAACGATTCTCTCTCAGCTAAAGGAGGTCGGGGAAACAAGTGGGATAGGATCTCTCTCAAGTCGAGGTGAGTGAGAACTCAGCCAAGAACAACAATGGAGTCTCTGTTGCTTTAGTTCTGCCAGCCAATTGGTTTCAACTTTCAACGCTGCTACTTGTTATTCATCACCTCCTCGGATCGGTTTGATTTATGCTCAAGGTTGTGCTATGCATGGTCATGCTGATTGAGGGCAAGATTTGCAGGGAGAGGAAGGATCCACTGTGTTTCTTTTCTGGGAGAAAGGAAAGTTGAGATTTGCAATATATACAAGTGTGAGCAGCAGCAGTTGAGATCCTTAATTCAGCCATGGCTTCTTTTGGGATGAACTGGAATCAGAAGAGCCCTGTGTTTTGGGACTGGGAAAATCCAGCGCCTTTCGGTCCGAATACAATGGAAAATCCCAAGAGCATACCTCACCCTGAACCAAGAGGTGTAGTTGTCGCGGCCGCAAATCATGGATCCACCAATTCATCCGGTGGCACGTTCACTTCTAGCTCGGAGCTAGCCAATGGTTCATCGAAGAGCTCCTTGTCAGCGTCGTTCGATTCCTCATCCAAGCTGGGGAACAGCTTAGAGTTCAGGTTTGCTTCTGTCAAAGGGCATGGCAAGAACATGTGCAAGGATGGCGAGGCCGGTAGAGTTGAAGACTCGGGCACTTCTCCAGCTGTGGCAGTTAGCCATGGTGAGCCGGTAATAGGACTCAAGTTAGGGAAGAGAACTTACTTTGAAAATGTTTGTGGAGGGCAGAATGTCAAGAGCTCCTCTGCAGCTTCAGGTGTGACTTGTCCATCTACTGTGGTCAAGAAGATGAAGGTGTCTCAGCAGAGCACACAAAGCTCATACTGCCAAGTTGAAGGCTGCAAAGTCGATCTGTCCTCCGCAAGAGAATACCATCGCAAGCACAAAGTTTGTGAAGCTCATTCTAAGGCACCAAAGGTTATTGTTTCTGGTCTGGAGCGCCGTTTTTGCCAACAGTGTAGTCGGTTTCATGGTTTAGCTGAATTTGACCAGAAAAAGAAAAGTTGCCGCAGGCGTCTATCTGATCATAATGCACGAAGAAGGAAACCGCAACAAGAGGCAATTTCATTTGGTTCATCAAGGCTCGCCACGATGTTTTACGATGCAAGGCAGCAGACAGATATTTACTTTGGCCAATCTCCTTTTGGCCAAGTGAGAAGCAATGCAATTTCTTCATGTGACAACCTGGGAGGCTTCAAATTTACAGAAGCAAAACTCCCCTGGATGAAGCCAATGAAAACTATAGGCCTTGAGGATCTGAATTTCTCTACCCTGCAGATGCCAGGCAATGTTGTGTCGCATACGGTGCATCATCATGATTTTGATGGGCTCATACCATTCAAGGGAAACACCCCGAAGGTCCTCAACCAAGGTGTGGATCCAGCCTGTGCCGTCGTGTCCTCCAACTCGAATGGAGCCCCGGATCTTCGGCGTGCTCTCTCTCTTCTGTCAAGCGATTCCTGGGGCCCGGCCGACGTTCAGGCCGGCTCCCAGGTGCATCCCGGTGGAGTGATGCCGCCCCTCGCCGTTGCCGCCGCCACCGTCACCGCCCCGACGAACCCTGTCAGTGTGATGCATGCTCTGCACCCGTCCACCGGAGGAGGAGGATTCTGGCAAGACGGCGACGACCCGCCTCCGCTCGATCATGCCTCGCAGGCTCAGGCGTTCATGCATCCTGGCAATGGCAGCAGCTCCGGCTATGGCCATCTGCACTGATTCTGCTGCATCTATTTGGAACGGGTTGATGGCTGGTTACTCCGTTCATGATCTTACCCTGTCAGTGATGGACTCTGAATAATTTGGGGGCGAATTGTCCTGCAACCCCAGGATTTATTATTTCTATTTTTGAAACCAAACCACCAGGATATTTGCCATTGGATGAGAAGTGTTCATGATCATGAAATGATCTGTTTTGTTCCACAGAATCTGACATATCTACTACTCGTCTTGGGAATGAGCTGAGATCGATTCGTGTGTTG] [+] EMBL AK102136 [TCAAATCAAGCAAAGCACCACTGCTGCTGCAAAGAACACCAGATAGATCAAACTCTCTCTCTCTCTGGTGTTGCTGTTAGTTGGTAGTTTGGTACTACTTGGTACTCTGGGAAGAAGAAAGAGATTATTATAGCAGAAAAGCAGCACCATGGCATAGCTCCAGGCAGCAAAACCAGAATACAACGGGGATAACGATTCTCTCTCAGCTAAAGGAGGTCGGGGAAACAAGTGGGATAGGATCTCTCTCAAGTCGAGGTGAGTGAGAACTCAGCCAAGAACAACAATGGAGTCTCTGTTGCTTTAGTTCTGCCAGCCAATTGGTTTCAACTTTCAACGCTGCTACTTGTTATTCATCACCTCCTCGGATCGGTTTGATTTATGCTCAAGGTTGTGCTATGCATGGTCATGCTGATTGAGGGCAAGATTTGCAGGGAGAGGAAGGATCCACTGTGTTTCTTTTCTGGGAGAAAGGAAAGTTGAGATTTGCAATATATACAAGTGTGAGCAGCAGCAGTTGAGATCCTTAATTCAGCCATGGCTTCTTTTGGGATGAACTGGAATCAGAAGAGCCCTGTGTTTTGGGACTGGGAAAATCCAGCGCCTTTCGGTCCGAATACAATGGAAAATCCCAAGAGCATACCTCACCCTGAACCAAGAGGTGTAGTTGTCGCGGCCGCAAATCATGGATCCACCAATTCATCCGGTGGCACGTTCACTTCTAGCTCGGAGCTAGCCAATGGTTCATCGAAGAGCTCCTTGTCAGCGTCGTTCGATTCCTCATCCAAGCTGGGGAACAGCTTAGAGTTCAGGTTTGCTTCTGTCAAAGGGCATGGCAAGAACATGTGCAAGGATGGCGAGGCCGGTAGAGTTGAAGACTCGGGCACTTCTCCAGCTGTGGCAGTTAGCCATGGTGAGCCGGTAATAGGACTCAAGTTAGGGAAGAGAACTTACTTTGAAAATGTTTGTGGAGGGCAGAATGTCAAGAGCTCCTCTGCAGCTTCAGGTGTGACTTGTCCATCTACTGTGGTCAAGAAGATGAAGGTGTCTCAGCAGAGCACACAAAGCTCATACTGCCAAGTTGAAGGCTGCAAAGTCGATCTGTCCTCCGCAAGAGAATACCATCGCAAGCACAAAGTTTGTGAAGCTCATTCTAAGGCACCAAAGGTTATTGTTTCTGGTCTGGAGCGCCGTTTTTGCCAACAGTGTAGTCGGTTTCATGGTTTAGCTGAATTTGACCAGAAAAAGAAAAGTTGCCGCAGGCGTCTATCTGATCATAATGCACGAAGAAGGAAACCGCAACAAGAGGCAATTTCATTTGGTTCATCAAGGCTCGCCACGATGTTTTACGATGCAAGGCAGCAGACAGATATTTACTTTGGCCAATCTCCTTTTGGCCAAGTGAGAAGCAATGCAATTTCTTCATGTGACAACCTGGGAGGCTTCAAATTTACAGAAGCAAAACTCCCCTGGATGAAGCCAATGAAAACTATAGGCCTTGAGGATCTGAATTTCTCTACCCTGCAGATGCCAGGCAATGTTGTGTCGCATACGGTGCATCATCATGATTTTGATGGGCTCATACCATTCAAGGGAAACACCCCGAAGGTCCTCAACCAAGGTGTGGATCCAGCCTGTGCCGTCGTGTCCTCCAACTCGAATGGAGCCCCGGATCTTCGGCGTGCTCTCTCTCTTCTGTCAAGCGATTCCTGGGGCCCGGCCGACGTTCAGGCCGGCTCCCAGGTGCATCCCGGTGGAGTGATGCCGCCCCTCGCCGTTGCCGCCGCCACCGTCACCGCCCCGACGAACCCTGTCAGTGTGATGCATGCTCTGCACCCGTCCACCGGAGGAGGAGGATTCTGGCAAGACGGCGACGACCCGCCTCCGCTCGATCATGCCTCGCAGGCTCAGGCGTTCATGCATCCTGGCAATGGCAGCAGCTCCGGCTATGGCCATCTGCACTGATTCTGCTGCATCTATTTGGAACGGGTTGATGGCTGGTTACTCCGTTCATGATCTTACCCTGTCAGTGATGGACTCTGAATAATTTGGGGGCGAATTGTCCTGCAACCCCAGGATTTATTATTTCTATTTTTGAAACCAAACCACCAGGATATTTGCCATTGGATGAGAAGTGTTCATGATCATGAAATGATCTGTTTTGTTCCACAGAATCTGACATATCTACTACTCGTCTTGGGAATGAGCTGAGATCGATTCGTGTGTTG] consensusID : consensus_10105#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence [CCACTGCTGCTGCAAAGAACACCAGATAGATCAAACTCTCTCTCTCTCTGGTGTTGCTGTTAGTTGGTAGTTTGGTACTACTTGGTACTCTGGGAAGAAGAAAGAGATTATTATAGCAGAAAAGCAGCACCATGGCATAGCTCCAGGCAGCAAAACCAGGTAGAATACAACGGGGATAACGATTCTCTCTCAGCTAAAGGAGATGCAAGGCAGCAGACAGATATTTACTTTGGCCAATCTCCTTTTGGCCAAGTGAGAAGCAATGCAATTTCTTCATGTGACAACCTGGGAGGCTTCAAATTTACAGAAGCAAAACTCCCCTGGATGAAGCCAATGAAAACTATAGGCCTTGAGGATCTGAATTTCTCTACCCTGCAGATGCCAGGCAATGTTGTNTCGCATACGGTGCATCATCATGATTTTGATGGGCTC] [+] EMBL OSR18831A [CCACTGCTGCTGCAAAGAACACCAGATAGATCAAACTCTCTCTCTCTCTGGTGTTGCTGTTAGTTGGTAGTTTGGTACTACTTGGTACTCTGGGAAGAAGAAAGAGATTATTATAGCAGAAAAGCAGCACCATGGCATAGCTCCAGGCAGCAAAACCAGGTAGAATACAACGGGGATAACGATTCTCTCTCAGCTAAAGGAGATGCAAGGCAGCAGACAGATATTTACTTTGGCCAATCTCCTTTTGGCCAAGTGAGAAGCAATGCAATTTCTTCATGTGACAACCTGGGAGGCTTCAAATTTACAGAAGCAAAACTCCCCTGGATGAAGCCAATGAAAACTATAGGCCTTGAGGATCTGAATTTCTCTACCCTGCAGATGCCAGGCAATGTTGTNTCGCATACGGTGCATCATCATGATTTTGATGGGCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10105#0 TACTCACTACACTACCAGTTGGTGTTTGTTCTGAGCATTATTGGAGTGTCAGGGAAGGGC 60 consensus_10105#1 ------------------------------------------------------------ consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 ATGTGCTTTTGTTGGTTGCTGTAGGAGGAGGCAGCCATCCACTGGGCCTCACTCTCCTCT 120 consensus_10105#1 ------------------------------------------------------------ consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 TGTTGCTGCCTCCTCCTCTTGTTACTGTTCAGTCTCAGGCTCTCAGGCTCACAGGTGGGG 180 consensus_10105#1 ------------------------------------------------------------ consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 TTTTGGGAGATACTAGTTAGGAGGGAAAGGTTGCCATCTTGTGTGTGTTGGATCTTTAAT 240 consensus_10105#1 ------------------------------------------------------------ consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 ACAACGGGGATAACGATTCTCTCTCAGCTAAAGGAGGTGAGATTCTTGGTTTCACATCAA 300 consensus_10105#1 ------------------------------------------------------------ consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 GTATTATTGTTCTTTCTTTTACTTCCTTCAAAATAGTTTCTTTGCTTTTTATTTCAT-AT 359 consensus_10105#1 ------------------TCAAATCAAGCAAAGCACCACTGCTGCTGCAAAGAACACCAG 42 consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 ATGGTTTGGTTTATTTATGCTCCCCAACAAGCAACTGGTTCATGTGCGGTAACAAGGAGC 419 consensus_10105#1 ATAGATCAAACTCTCTCTCTCTCTGGTGTTGCTGTTAGTT-------GGTAGTTTGGTAC 95 consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 AAATAATGCAGCTCTGATTGACTTGGGGTAGTTGTTGTGGTGATAGATTGGAAAGGGTTT 479 consensus_10105#1 TACT--TGGTACTCTGGGAAGAAGAAAGAGATTATTATAGCAGAAAAGCAGCACCA--TG 151 consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 AAATAGCGGGTGGTTGTGGTGATGAATGGGGGCCAGCCTTGATGGGGTTGATGCTGTCGT 539 consensus_10105#1 GCATAGCTCCAGGCAGCAA----AACCAGAATACAACGGGGATAACGATTCT-CTCTCAG 206 consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 CTTTT--AGGTCGGGGAAACAAGTGGGATAGGATCTCCCTCAAGTCGAGGTGAGTGAGAA 597 consensus_10105#1 CTAAAGGAGGTCGGGGAAACAAGTGGGATAGGATCTCTCTCAAGTCGAGGTGAGTGAGAA 266 consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 CTCAGCCAAGAACAACAATGGAGTCTCTGTTGCTTTAGTTCTGCCAGCCAATTGGTTTCA 657 consensus_10105#1 CTCAGCCAAGAACAACAATGGAGTCTCTGTTGCTTTAGTTCTGCCAGCCAATTGGTTTCA 326 consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 ACTTTCAACGCTGCTACTTGTTATTCATCACCTCCTCGGATCGGTTTGATTTATGCTCAA 717 consensus_10105#1 ACTTTCAACGCTGCTACTTGTTATTCATCACCTCCTCGGATCGGTTTGATTTATGCTCAA 386 consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 GGTTGTGCTATGCATGGTCATGCTGATTGAGGGCAAGATTTGCAGGGAGAGGAAGGATCC 777 consensus_10105#1 GGTTGTGCTATGCATGGTCATGCTGATTGAGGGCAAGATTTGCAGGGAGAGGAAGGATCC 446 consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 ACTGTGTTTCTTTTCTGGGAGAAAGGAAAGTTGAGATTTGCAATATATACAAGTGTGAGC 837 consensus_10105#1 ACTGTGTTTCTTTTCTGGGAGAAAGGAAAGTTGAGATTTGCAATATATACAAGTGTGAGC 506 consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 AGCAGCAGTTGAGATCCTTAATTCAGCCATGGCTTCTTTTGGGATGAACTGGAATCAGAA 897 consensus_10105#1 AGCAGCAGTTGAGATCCTTAATTCAGCCATGGCTTCTTTTGGGATGAACTGGAATCAGAA 566 consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 GAGCCCTGTGTTTTGGGACTGGGAAAATCCAGCGCCTTTCGGTCCGAATACAATGGAAAA 957 consensus_10105#1 GAGCCCTGTGTTTTGGGACTGGGAAAATCCAGCGCCTTTCGGTCCGAATACAATGGAAAA 626 consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 TCCCAAGAGCATACCTCACCCTGAACCAAGAGGTGTAGTTGTCGCGGCCGCAAATCATGG 1017 consensus_10105#1 TCCCAAGAGCATACCTCACCCTGAACCAAGAGGTGTAGTTGTCGCGGCCGCAAATCATGG 686 consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 ATCCACCAATTCATCCGGTGGCACGTTCACTTCTAGCTCGGAGCTAGCCAATGGTTCATC 1077 consensus_10105#1 ATCCACCAATTCATCCGGTGGCACGTTCACTTCTAGCTCGGAGCTAGCCAATGGTTCATC 746 consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 GAAGAGCTCCTTGTCAGCGTCGTTCGATTCCTCATCCAAGCTGGGGAACAGCTTAGAGTT 1137 consensus_10105#1 GAAGAGCTCCTTGTCAGCGTCGTTCGATTCCTCATCCAAGCTGGGGAACAGCTTAGAGTT 806 consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 CAGGTTTGCTTCTGTCAAAGGGCATGGCAAGAACATGTGCAAGGATGGCGAGGCCGGTAG 1197 consensus_10105#1 CAGGTTTGCTTCTGTCAAAGGGCATGGCAAGAACATGTGCAAGGATGGCGAGGCCGGTAG 866 consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 AGTTGAAGACTCGGGCACTTCTCCAGCTGTGGCAGTTAGCCATGGTGAGCCGGTAATAGG 1257 consensus_10105#1 AGTTGAAGACTCGGGCACTTCTCCAGCTGTGGCAGTTAGCCATGGTGAGCCGGTAATAGG 926 consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 ACTCAAGTTAGGGAAGAGAACTTACTTTGAAAATGTTTGTGGAGGGCAGAATGTCAAGAG 1317 consensus_10105#1 ACTCAAGTTAGGGAAGAGAACTTACTTTGAAAATGTTTGTGGAGGGCAGAATGTCAAGAG 986 consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 CTCCTCTGCAGCTTCAGGTGTGACTTGTCCATCTACTGTGGTCAAGAAGATGAAGGTGTC 1377 consensus_10105#1 CTCCTCTGCAGCTTCAGGTGTGACTTGTCCATCTACTGTGGTCAAGAAGATGAAGGTGTC 1046 consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 TCAGCAGAGCACACAAAGCTCATACTGCCAAGTTGAAGGCTGCAAAGTCGATCTGTCCTC 1437 consensus_10105#1 TCAGCAGAGCACACAAAGCTCATACTGCCAAGTTGAAGGCTGCAAAGTCGATCTGTCCTC 1106 consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 CGCAAGAGAATACCATCGCAAGCACAAAGTTTGTGAAGCTCATTCTAAGGCACCAAAGGT 1497 consensus_10105#1 CGCAAGAGAATACCATCGCAAGCACAAAGTTTGTGAAGCTCATTCTAAGGCACCAAAGGT 1166 consensus_10105#2 ---------------------CCACTGCTGCTGCAAAGAACACCAGATAGATCAAACTCT 39 *** ** *** ** * * * ** * consensus_10105#0 TATTGTTTCTGGTCTGGAGCGCCGTTTTTGCCAACAGTGTAGTCGGTTTCATGGTTTAGC 1557 consensus_10105#1 TATTGTTTCTGGTCTGGAGCGCCGTTTTTGCCAACAGTGTAGTCGGTTTCATGGTTTAGC 1226 consensus_10105#2 CTCTCTCTCTGGTGT----TGCTGTT--AGTTGGTAGTTTGGT--ACTACTTGGT----- 86 * * ****** * ** *** * *** * ** * * **** consensus_10105#0 TGAATTTGACCAGAAAAAGAAAAGTTGCCGCAGGCGTCTATCTGATCATAATGCACGAAG 1617 consensus_10105#1 TGAATTTGACCAGAAAAAGAAAAGTTGCCGCAGGCGTCTATCTGATCATAATGCACGAAG 1286 consensus_10105#2 --ACTCTGGGAAGAAGAA-AGAGATTATTATAGCAGAAAAGCAG--CACCATG-GCATAG 140 * * ** **** ** * * ** ** * * * * ** *** * ** consensus_10105#0 AAGGAAACCGCAACAAGAGGCA-ATTTCATTTGGTTCATCAAGGCTCGCCACGATGTTTT 1676 consensus_10105#1 AAGGAAACCGCAACAAGAGGCA-ATTTCATTTGGTTCATCAAGGCTCGCCACGATGTTTT 1345 consensus_10105#2 CTCCAGGCAGCAAAACCAGGTAGAATACAACGGGGATAACGATTCTCTCTCAGCTAAAGG 200 * * **** * *** * * * ** ** * * * *** * * * consensus_10105#0 ACGATGCAAGGCAGCAGACAGATATTTACTTTGGCCAATCTCCTTTTGGCCAAGTGAGAA 1736 consensus_10105#1 ACGATGCAAGGCAGCAGACAGATATTTACTTTGGCCAATCTCCTTTTGGCCAAGTGAGAA 1405 consensus_10105#2 A-GATGCAAGGCAGCAGACAGATATTTACTTTGGCCAATCTCCTTTTGGCCAAGTGAGAA 259 * ********************************************************** consensus_10105#0 GCAATGCAATTTCTTCATGTGACAACCTGGGAGGCTTCAAATTTACAGAAGCAAAACTCC 1796 consensus_10105#1 GCAATGCAATTTCTTCATGTGACAACCTGGGAGGCTTCAAATTTACAGAAGCAAAACTCC 1465 consensus_10105#2 GCAATGCAATTTCTTCATGTGACAACCTGGGAGGCTTCAAATTTACAGAAGCAAAACTCC 319 ************************************************************ consensus_10105#0 CCTGGATGAAGCCAATGAAAACTATAGGCCTTGAGGATCTGAATTTCTCTACCCTGCAGA 1856 consensus_10105#1 CCTGGATGAAGCCAATGAAAACTATAGGCCTTGAGGATCTGAATTTCTCTACCCTGCAGA 1525 consensus_10105#2 CCTGGATGAAGCCAATGAAAACTATAGGCCTTGAGGATCTGAATTTCTCTACCCTGCAGA 379 ************************************************************ consensus_10105#0 TGCCAGGCAATGTTGTGTCGCATACGGTGCATCATCATGATTTTGATGGGCTCATACCAT 1916 consensus_10105#1 TGCCAGGCAATGTTGTGTCGCATACGGTGCATCATCATGATTTTGATGGGCTCATACCAT 1585 consensus_10105#2 TGCCAGGCAATGTTGTNTCGCATACGGTGCATCATCATGATTTTGATGGGCTC------- 432 **************** ************************************ consensus_10105#0 TCAAGGGAAACACCCCGAAGGTCCTCAACCAAGGTGTGGATCCAGCCTGTGCCGTCGTGT 1976 consensus_10105#1 TCAAGGGAAACACCCCGAAGGTCCTCAACCAAGGTGTGGATCCAGCCTGTGCCGTCGTGT 1645 consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 CCTCCAACTCGAATGGAGCCCCGGATCTTCGGCGTGCTCTCTCTCTTCTGTCAAGCGATT 2036 consensus_10105#1 CCTCCAACTCGAATGGAGCCCCGGATCTTCGGCGTGCTCTCTCTCTTCTGTCAAGCGATT 1705 consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 CCTGGGGCCCGGCCGACGTTCAGGCCGGCTCCCAGGTGCATCCCGGTGGAGTGATGCCGC 2096 consensus_10105#1 CCTGGGGCCCGGCCGACGTTCAGGCCGGCTCCCAGGTGCATCCCGGTGGAGTGATGCCGC 1765 consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 CCCTCGCCGTTGCCGCCGCCACCGTCACCGCCCCGACGAACCCTGTCAGTGTGATGCATG 2156 consensus_10105#1 CCCTCGCCGTTGCCGCCGCCACCGTCACCGCCCCGACGAACCCTGTCAGTGTGATGCATG 1825 consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 CTCTGCACCCGTCCACCGGAGGAGGAGGATTCTGGCAAGACGGCGACGACCCGCCTCCGC 2216 consensus_10105#1 CTCTGCACCCGTCCACCGGAGGAGGAGGATTCTGGCAAGACGGCGACGACCCGCCTCCGC 1885 consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 TCGATCATGCCTCGCAGGCTCAGGCGTTCATGCATCCTGGCAATGGCAGCAGCTCCGGCT 2276 consensus_10105#1 TCGATCATGCCTCGCAGGCTCAGGCGTTCATGCATCCTGGCAATGGCAGCAGCTCCGGCT 1945 consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 ATGGCCATCTGCACTGATTCTGCTGCATCTATTTGGAACGGGTTGATGACTGGTTACTCC 2336 consensus_10105#1 ATGGCCATCTGCACTGATTCTGCTGCATCTATTTGGAACGGGTTGATGGCTGGTTACTCC 2005 consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 GTTCATGATCTTACCCTGTCAGTGATGGACTCTGAATAATTTGGGGGCGAATTGTCCTGC 2396 consensus_10105#1 GTTCATGATCTTACCCTGTCAGTGATGGACTCTGAATAATTTGGGGGCGAATTGTCCTGC 2065 consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 AACCCCAGGATTTATTATTTCTATTTTTGAAACCAAACCACCAGGATATTTGCCATTGGA 2456 consensus_10105#1 AACCCCAGGATTTATTATTTCTATTTTTGAAACCAAACCACCAGGATATTTGCCATTGGA 2125 consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 TGAGAAGTGTTCATGATCATGAAATGATCTGTTTTGTTCAAAAAAAAAAAAAAAAAAAAA 2516 consensus_10105#1 TGAGAAGTGTTCATGATCATGAAATGATCTGTTTTGTTCCACAGAATCTGACATATCTAC 2185 consensus_10105#2 ------------------------------------------------------------ consensus_10105#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--- 2553 consensus_10105#1 TACTCGTCTTGGGAATGAGCTGAGATCGATTCGTGTGTTG 2225 consensus_10105#2 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||