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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10107#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1608 fasta sequence
[GGCGCCGCCGCCGCCGCCGCCGTGCTCCGTGCGCGCCGCGGGCTCCAATCCAATTGGCTGCCTCGAGGTAGCAGAGCCGTGGAGCGGCGCCGCGCCGCCCCCGCTGCCGCCGCTGCCGGGCCATCTGCATGTCGCGGCGCCGGCGGCGGAGGACGACGACGACGCGCTCGCCGCCGCCGCCGCCGCCGTGCCGTCCGAGCAGAGGGTGCACGACGTCGTTCTGAAGCAAGCGGCGCTCGCCGCGGCAGCGCCCGAGATGCGGAGGCCGGCGCAGTTGGCCGAGAGGGAGCGCGTCGCCGGCGGCCTGAACGCCGCCTTCGATCGCTGCGGCGAGGTCTGCAAGGAGTACGCCAAGACATTCTACCTCGCGACGCAGCTGATGACGCCGGAGAGGAGGAGGGCAATCTGGGCGATATACGTGTGGTGCAGGCGAACGGACGAGCTGGTGGATGGGCCCAACGCGTCGCACATGTCGGCGCTGGCTCTCGACCGGTGGGAGTCGCGGCTGGACGACATCTTCGCCGGCCGCCCCTACGACATGCTCGACGCCGCCCTCTCCCACACCGTCGCCACCTTCCCCGTCGACATCCAGCCGTTCAGGGACATGATCGAGGGGATGCGATTGGACCTAACGAAGTCGAGGTACAGGAGCTTCGACGAGCTCTACCTCTACTGCTACTACGTCGCCGGAACGGTCGGGCTCATGACGGTGCCGGTCATGGGCATCTCGCCGGACTCGAGGGCCAACACCGAGACCGTCTACAAGGGGGCACTGGCTCTCGGCCTCGCCAACCAGCTCACCAACATTCTCAGGGACGTCGGCGAGGATGCAAGAAGAGGCAGGATCTATCTCCCAATGGACGAGCTCGAGATGGCCGGACTCTCTGAAGATGACATCTTCGACGGCCGCGTCACGGACAGATGGAGATGTTTTATGAGGGATCAGATCACGAGAGCGAGGGCGTTTTTCAGACAGGCCGAAGAAGGCGCCAGCGAGCTCAATCAGGAG-AGCCGATGGCCGGTTTGGGCTTCTCTACTTCTGTACCGACAAATCCTTGACGAGATCGAGGCCAACGATTACAACAACTTCACCAAGAGGGCCTACGTCCCAAAGGCAAAGAAGATTGTGGCTCTGCCTAAAGCTTACTACAGATCACTCATGCTCCCCTCTTCAGTGAGGCACTGCTCTAGCCTAACATCATCATGATCAGCTTGTGGTATTGTTGTTACAATTTATCTTGTATTCAAGTCTTGCAATGTACAAAGTATTGCAGTATCTGCAAATATATGTACACTTTAACATTGTGTATATATAGGGAAGTTTCTATGAAACAGAGTAGTGTATATATGACCATATTTCATAGGTCATACTACTCTTGCATAATGCTGTCAGCTTATCACTCATTGCTTCAGTCAATCAGCTAGGTTGTGAAAGTACCTAACTATCTATATGAAATATTAGTCTTATCAGCATGGGTGTAAGATGGGTATGTACCCCCACAAAGATTTCCAATCTATTAGTCAAAAACAGCAACGTTTTTTTTTATAAAACATTGGTGTACAGGTGTCACCTTTTATGAAGGATCATTAGCATGAGCTCAGCAAAAA]
[+] EMBL AK108154 [GGCGCCGCCGCCGCCGCCGCCGTGCTCCGTGCGCGCCGCGGGCTCCAATCCAATTGGCTGCCTCGAGGTAGCAGAGCCGTGGAGCGGCGCCGCGCCGCCCCCGCTGCCGCCGCTGCCGGGCCATCTGCATGTCGCGGCGCCGGCGGCGGAGGACGACGACGACGCGCTCGCCGCCGCCGCCGCCGCCGTGCCGTCCGAGCAGAGGGTGCACGACGTCGTTCTGAAGCAAGCGGCGCTCGCCGCGGCAGCGCCCGAGATGCGGAGGCCGGCGCAGTTGGCCGAGAGGGAGCGCGTCGCCGGCGGCCTGAACGCCGCCTTCGATCGCTGCGGCGAGGTCTGCAAGGAGTACGCCAAGACATTCTACCTCGCGACGCAGCTGATGACGCCGGAGAGGAGGAGGGCAATCTGGGCGATATACGTGTGGTGCAGGCGAACGGACGAGCTGGTGGATGGGCCCAACGCGTCGCACATGTCGGCGCTGGCTCTCGACCGGTGGGAGTCGCGGCTGGACGACATCTTCGCCGGCCGCCCCTACGACATGCTCGACGCCGCCCTCTCCCACACCGTCGCCACCTTCCCCGTCGACATCCAGCCGTTCAGGGACATGATCGAGGGGATGCGATTGGACCTAACGAAGTCGAGGTACAGGAGCTTCGACGAGCTCTACCTCTACTGCTACTACGTCGCCGGAACGGTCGGGCTCATGACGGTGCCGGTCATGGGCATCTCGCCGGACTCGAGGGCCAACACCGAGACCGTCTACAAGGGGGCACTGGCTCTCGGCCTCGCCAACCAGCTCACCAACATTCTCAGGGACGTCGGCGAGGATGCAAGAAGAGGCAGGATCTATCTCCCAATGGACGAGCTCGAGATGGCCGGACTCTCTGAAGATGACATCTTCGACGGCCGCGTCACGGACAGATGGAGATGTTTTATGAGGGATCAGATCACGAGAGCGAGGGCGTTTTTCAGACAGGCCGAAGAAGGCGCCAGCGAGCTCAATCAGGAG AGCCGATGGCCGGTTTGGGCTTCTCTACTTCTGTACCGACAAATCCTTGACGAGATCGAGGCCAACGATTACAACAACTTCACCAAGAGGGCCTACGTCCCAAAGGCAAAGAAGATTGTGGCTCTGCCTAAAGCTTACTACAGATCACTCATGCTCCCCTCTTCAGTGAGGCACTGCTCTAGCCTAACATCATCATGATCAGCTTGTGGTATTGTTGTTACAATTTATCTTGTATTCAAGTCTTGCAATGTACAAAGTATTGCAGTATCTGCAAATATATGTACACTTTAACATTGTGTATATATAGGGAAGTTTCTATGAAACAGAGTAGTGTATATATGACCATATTTCATAGGTCATACTACTCTTGCATAATGCTGTCAGCTTATCACTCATTGCTTCAGTCAATCAGCTAGGTTGTGAAAGTACCTAACTATCTATATGAAATATTAGTCTT ]
[+] EMBL AY078162 [ cgatCATGATCGAGGGGATGCGATTGGACCTAACGAAGTCGAGGTACAGGAGCTTCGACGAGGTCTACCTCTACTGCTACTACGTCGCCGGAACGGTCGGGCTCATGACGGTGCCGGTCATGGGCATCTCGCCGGACTCGAGGGCCAACACCGAGACCGTCTACAAGGGGGCACTGGCTCTCGGCCTCGCCAACCAGCTCACCAACATTCTCAGGGACGTCGGCGAGGATGCAAGAAGAGGCAGGATCTATCTCCCAATGGACGAGCTCGAGATGGCCGGACTCTCTGAAGATGACATCTTCGACGGCCGCGTCACGGACAGATGGAGATGTTTTATGAGGGATCAGATCACGAGAGCGAGGGCGTTTTTCAGACAGGCCGAAGAAGGCGCCAGCGAGCTCAATAAGGAG AGCCGATGGCCGGTTTGGGCTTCTCTACTTCTGTACCGACAAATCCTTGACGAGATCGAGGCCAACGGTTACAACAACTTCACCAAGAGGGCCTACGTCCCAAAGGCAAAGAAGATTGTGGCTCTGCCTAAAGCTTACTACAGATCACTCATGCTCCCCTCTTCAGTGAGGCACTGCTCTAGCCTAACATCATCATGATC ]
[+] EMBL CF312553 [ TACAGGAGCTTCGACGAGCTCTACCTCTACTGCTACTACGTCGCCGGAACGGTCGGGCTCATGACGGTGCCGGTCATGGGCATCTCGCCGGACTCGAGGGCCAACACCGAGACCGTCTACAAGGGGGCACTGGCTCTCGGCCTCGCCAACCAGCTCACCAACATTCTCAGGGACGTCGGCGAGGATGCAAGAAGAGGCAGGATCTATCTCCCAATGGACGAGCTCGAGATGGCCGGACTCTCTGAAGATGACATCTTCGACGGCCGCGTCACGGACAGAGGGAGATGTTTTATGAGGGATCAGATCACGAGAGCGAGGGCGTTTTTCAGACAGGCCGAAGAAGGCGCCAGCGAGCTCAATCAGGAGAAGCCGATGGCCGGTTTGGGCTTCTCTACTTCTGTACCGACAAATCCTTGACGAGATCGAGGCCAACGATTACAACAACTTCACCAAGAGGGCCTACGTCCCAAAGGCAAAGAAGATTGTGGCTCTGCCTAAAGCTTACTACAGATCACTCATGCTCCCCTCTTCAGTGAGGCACTGCTCTAGCCTAACATCAT ]
[+] EMBL AU165065 [ aAGCTTATCGCTCATTGCTTCAGTCAATCAGCTAGGTTGTGAAAGTACCTAACTATCTATATGAAATATTAGTCTTATCAGCATGGGTGTAAGATGGGTATGTACCCCCACAAAGATTTCCAATCTATTAGTCAAAAACAGCAACGTTTTTTTTTATAAAACATTGGTGTACAGGTGTCACCTTTTATGAAGGATCATTAGCATGAGCTCAGCAAAAA]
consensusID : consensus_10107#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence
[CACGGACAGATGGAGATGTTTTATGAGGGATCAGATCACGAGAGCGAGGGCGTTTTTCAGACAGGCCGAAGAAGGCGCCAGCGAGCTCAATCAGGAGAGCCGATGGCCGGTTTGGGCTTCTCTACTTCTGTACCGACAAATCCTTGACGAGATCGAGGCCAACGATTACAACAACTTCACCANAGAGGGCCTACGTCCCAAAGGCAAAGAAGATTGTGGCTCTGCCTAAAGCTTACTACAGATCACTCATGCTCCCCTCTTCAGTGAGGCACTGCTCTAGCCTAACATCATCATGATCAGCTTGTGGTATTGTTGTTACAATTTATCTTGTATTCAAGTCTTGCAATGTACAAAGTATTGCAGTATCTGCAAATATATGTACACTTTAACATTGTGTATATATAGGGAAGTTTCTATGAAACAGAGTAGTGTATATATGCCCATAAAAAAAAAACAAAAAA]
[-] EMBL CF312554 [CACGGACAGATGGAGATGTTTTATGAGGGATCAGATCACGAGAGCGAGGGCGTTTTTCAGACAGGCCGAAGAAGGCGCCAGCGAGCTCAATCAGGAGAGCCGATGGCCGGTTTGGGCTTCTCTACTTCTGTACCGACAAATCCTTGACGAGATCGAGGCCAACGATTACAACAACTTCACCANAGAGGGCCTACGTCCCAAAGGCAAAGAAGATTGTGGCTCTGCCTAAAGCTTACTACAGATCACTCATGCTCCCCTCTTCAGTGAGGCACTGCTCTAGCCTAACATCATCATGATCAGCTTGTGGTATTGTTGTTACAATTTATCTTGTATTCAAGTCTTGCAATGTACAAAGTATTGCAGTATCTGCAAATATATGTACACTTTAACATTGTGTATATATAGGGAAGTTTCTATGAAACAGAGTAGTGTATATATGCCCATAAAAAAAAAACAAAAAA]
consensusID : consensus_10107#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 406 fasta sequence
[GAGCTCAATCAGGAGAGCCGATGGCCGGTTTGGGCTTCTCTACTTCTGTACCGACAAATCCTTGACGAGATCGAGGCCAACGATTACAACAACTTCACCAAGAGGGCCTACGTCCCAAAGGCAAAGAAGATTGTGGCTCTGCCTAAAGCTTACTACAGATCACTCATGCTCCCCTCTTCAGTGAGGCACTGCTCTAGCCTAACATCATCATGATCAGCTTGTGGTATTGTTGTTACAATTTATCTTGTATTCAAGTCTTGCAATGTACAAAGTATTGCAGTATCTGCAAATATATGTACACTTTAACATTGTGTATATATA-GGGAAGTTTCTATGAAACAGAGTAGTGTATATATGACCATATTTCATAGGTCATACTACTCTTGCATAAAAAAAAAAAAAAAAAA]
[-] EMBL CF305089 [GAGCTCAATCAGGAGAGCCGATGGCCGGTTTGGGCTTCTCTACTTCTGTACCGACAAATCCTTGACGAGATCGAGGCCAACGATTACAACAACTTCACCAAGAGGGCCTACGTCCCAAAGGCAAAGAAGATTGTGGCTCTGCCTAAAGCTTACTACAGATCACTCATGCTCCCCTCTTCAGTGAGGCACTGCTCTAGCCTAACATCATCATGATCAGCTTGTGGTATTGTTGTTACAATTTATCTTGTATTCAAGTCTTGCAATGTACAAAGTATTGCAGTATCTGCAAATATATGTACACTTTAACATTGTGTATATATA GGGAAGTTTCTATGAAACAGAGTAGTGTATATATGACCATATTTCATAGGTCATACTACTCTTGCATAAAAAAAAAAAAAAAAAA]
[+] EMBL CF307565 [ AGCTTACTACAGATCACTCATGCTCCCCTCTTCAGTGAGGCACTGCTCTAGCCTAACATCATCATGATCAGCTTGTGGTATTGTTGTTACAATTTATCTTGTATTCAAGTCTTGCAATGTACAAAGTATTGCAGTATCTGCAAATATATGTACACTTTAACATTGTGTATATATAGGGGAAGTTTCTATGAAACAGAGTAGTGTATATATGACCATATTTCATAGGTCATACTACTCTTGCATAAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10107#0 GGCGCCGCCGCCGCCGCCGCCGTGCTCCGTGCGCGCCGCGGGCTCCAATCCAATTGGCTG 60
consensus_10107#2 ------------------------------------------------------------
consensus_10107#1 ------------------------------------------------------------
consensus_10107#0 CCTCGAGGTAGCAGAGCCGTGGAGCGGCGCCGCGCCGCCCCCGCTGCCGCCGCTGCCGGG 120
consensus_10107#2 ------------------------------------------------------------
consensus_10107#1 ------------------------------------------------------------
consensus_10107#0 CCATCTGCATGTCGCGGCGCCGGCGGCGGAGGACGACGACGACGCGCTCGCCGCCGCCGC 180
consensus_10107#2 ------------------------------------------------------------
consensus_10107#1 ------------------------------------------------------------
consensus_10107#0 CGCCGCCGTGCCGTCCGAGCAGAGGGTGCACGACGTCGTTCTGAAGCAAGCGGCGCTCGC 240
consensus_10107#2 ------------------------------------------------------------
consensus_10107#1 ------------------------------------------------------------
consensus_10107#0 CGCGGCAGCGCCCGAGATGCGGAGGCCGGCGCAGTTGGCCGAGAGGGAGCGCGTCGCCGG 300
consensus_10107#2 ------------------------------------------------------------
consensus_10107#1 ------------------------------------------------------------
consensus_10107#0 CGGCCTGAACGCCGCCTTCGATCGCTGCGGCGAGGTCTGCAAGGAGTACGCCAAGACATT 360
consensus_10107#2 ------------------------------------------------------------
consensus_10107#1 ------------------------------------------------------------
consensus_10107#0 CTACCTCGCGACGCAGCTGATGACGCCGGAGAGGAGGAGGGCAATCTGGGCGATATACGT 420
consensus_10107#2 ------------------------------------------------------------
consensus_10107#1 ------------------------------------------------------------
consensus_10107#0 GTGGTGCAGGCGAACGGACGAGCTGGTGGATGGGCCCAACGCGTCGCACATGTCGGCGCT 480
consensus_10107#2 ------------------------------------------------------------
consensus_10107#1 ------------------------------------------------------------
consensus_10107#0 GGCTCTCGACCGGTGGGAGTCGCGGCTGGACGACATCTTCGCCGGCCGCCCCTACGACAT 540
consensus_10107#2 ------------------------------------------------------------
consensus_10107#1 ------------------------------------------------------------
consensus_10107#0 GCTCGACGCCGCCCTCTCCCACACCGTCGCCACCTTCCCCGTCGACATCCAGCCGTTCAG 600
consensus_10107#2 ------------------------------------------------------------
consensus_10107#1 ------------------------------------------------------------
consensus_10107#0 GGACATGATCGAGGGGATGCGATTGGACCTAACGAAGTCGAGGTACAGGAGCTTCGACGA 660
consensus_10107#2 ------------------------------------------------------------
consensus_10107#1 ------------------------------------------------------------
consensus_10107#0 GCTCTACCTCTACTGCTACTACGTCGCCGGAACGGTCGGGCTCATGACGGTGCCGGTCAT 720
consensus_10107#2 ------------------------------------------------------------
consensus_10107#1 ------------------------------------------------------------
consensus_10107#0 GGGCATCTCGCCGGACTCGAGGGCCAACACCGAGACCGTCTACAAGGGGGCACTGGCTCT 780
consensus_10107#2 ------------------------------------------------------------
consensus_10107#1 ------------------------------------------------------------
consensus_10107#0 CGGCCTCGCCAACCAGCTCACCAACATTCTCAGGGACGTCGGCGAGGATGCAAGAAGAGG 840
consensus_10107#2 ------------------------------------------------------------
consensus_10107#1 ------------------------------------------------------------
consensus_10107#0 CAGGATCTATCTCCCAATGGACGAGCTCGAGATGGCCGGACTCTCTGAAGATGACATCTT 900
consensus_10107#2 ------------------------------------------------------------
consensus_10107#1 ------------------------------------------------------------
consensus_10107#0 CGACGGCCGCGTCACGGACAGATGGAGATGTTTTATGAGGGATCAGATCACGAGAGCGAG 960
consensus_10107#2 ------------------------------------------------------------
consensus_10107#1 ------------CACGGACAGATGGAGATGTTTTATGAGGGATCAGATCACGAGAGCGAG 48
consensus_10107#0 GGCGTTTTTCAGACAGGCCGAAGAAGGCGCCAGCGAGCTCAATCAGGAGAGCCGATGGCC 1020
consensus_10107#2 ----------------------------------GAGCTCAATCAGGAGAGCCGATGGCC 26
consensus_10107#1 GGCGTTTTTCAGACAGGCCGAAGAAGGCGCCAGCGAGCTCAATCAGGAGAGCCGATGGCC 108
**************************
consensus_10107#0 GGTTTGGGCTTCTCTACTTCTGTACCGACAAATCCTTGACGAGATCGAGGCCAACGATTA 1080
consensus_10107#2 GGTTTGGGCTTCTCTACTTCTGTACCGACAAATCCTTGACGAGATCGAGGCCAACGATTA 86
consensus_10107#1 GGTTTGGGCTTCTCTACTTCTGTACCGACAAATCCTTGACGAGATCGAGGCCAACGATTA 168
************************************************************
consensus_10107#0 CAACAACTTCACCAA-GAGGGCCTACGTCCCAAAGGCAAAGAAGATTGTGGCTCTGCCTA 1139
consensus_10107#2 CAACAACTTCACCAA-GAGGGCCTACGTCCCAAAGGCAAAGAAGATTGTGGCTCTGCCTA 145
consensus_10107#1 CAACAACTTCACCANAGAGGGCCTACGTCCCAAAGGCAAAGAAGATTGTGGCTCTGCCTA 228
************** ********************************************
consensus_10107#0 AAGCTTACTACAGATCACTCATGCTCCCCTCTTCAGTGAGGCACTGCTCTAGCCTAACAT 1199
consensus_10107#2 AAGCTTACTACAGATCACTCATGCTCCCCTCTTCAGTGAGGCACTGCTCTAGCCTAACAT 205
consensus_10107#1 AAGCTTACTACAGATCACTCATGCTCCCCTCTTCAGTGAGGCACTGCTCTAGCCTAACAT 288
************************************************************
consensus_10107#0 CATCATGATCAGCTTGTGGTATTGTTGTTACAATTTATCTTGTATTCAAGTCTTGCAATG 1259
consensus_10107#2 CATCATGATCAGCTTGTGGTATTGTTGTTACAATTTATCTTGTATTCAAGTCTTGCAATG 265
consensus_10107#1 CATCATGATCAGCTTGTGGTATTGTTGTTACAATTTATCTTGTATTCAAGTCTTGCAATG 348
************************************************************
consensus_10107#0 TACAAAGTATTGCAGTATCTGCAAATATATGTACACTTTAACATTGTGTATATATAGGGA 1319
consensus_10107#2 TACAAAGTATTGCAGTATCTGCAAATATATGTACACTTTAACATTGTGTATATATAGGGA 325
consensus_10107#1 TACAAAGTATTGCAGTATCTGCAAATATATGTACACTTTAACATTGTGTATATATAGGGA 408
************************************************************
consensus_10107#0 AGTTTCTATGAAACAGAGTAGTGTATATATGACCATATTTCATAGGTCATACTACTCTTG 1379
consensus_10107#2 AGTTTCTATGAAACAGAGTAGTGTATATATGACCATATTTCATAGGTCATACTACTCTTG 385
consensus_10107#1 AGTTTCTATGAAACAGAGTAGTGTATATATGCCCATAAAAAAAAAACAAAAAA------- 461
******************************* ***** * * * *
consensus_10107#0 CATAATGCTGTCAGCTTATCACTCATTGCTTCAGTCAATCAGCTAGGTTGTGAAAGTACC 1439
consensus_10107#2 CATAAAAAAAAAAAAAAAAAA--------------------------------------- 406
consensus_10107#1 ------------------------------------------------------------
consensus_10107#0 TAACTATCTATATGAAATATTAGTCTTATCAGCATGGGTGTAAGATGGGTATGTACCCCC 1499
consensus_10107#2 ------------------------------------------------------------
consensus_10107#1 ------------------------------------------------------------
consensus_10107#0 ACAAAGATTTCCAATCTATTAGTCAAAAACAGCAACGTTTTTTTTTATAAAACATTGGTG 1559
consensus_10107#2 ------------------------------------------------------------
consensus_10107#1 ------------------------------------------------------------
consensus_10107#0 TACAGGTGTCACCTTTTATGAAGGATCATTAGCATGAGCTCAGCAAAAA 1608
consensus_10107#2 -------------------------------------------------
consensus_10107#1 -------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||