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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10111#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 756 fasta sequence
[CTCTCTTTCTCTCCCCTCAACACCGTAGCACTGCTTCTCGCGACCACGCGAAGAGGGAGGAGGAGGCTAGCGACCACGCCGACAGGGGTGGGGGCGGCACGACACGACGGTGGTGGGGTCGTGCATCGCGGCGGCGGTCGCCGTTGGCATCTTGCTCGGCTGCTTGTGCACCTTCCTCTACCCCGATGGGCTCCTCTCCTGCTGCTCCAACGCCGCCCTCCATTGGCCTCGCCAGGTAAACCACCTCTGCACCTATCTCCCCCATCCCCGCCGGCGGTGGGCGTAGTGGCGCTACAGCAAGAACAGCCGCCGCCGGTGATGGAGGTGGACTCGCCGGCGACCGGAGATGAAGAAGATGGAGGTGGGTTTATTTTGATGAAGACGGAGACGGGTTTATTTAGTTGGAGTTTAGGGATGTTACATCCTACTGTTTTAGCTTGTTGCACTCTATTGTAGTAAGCTGTTTCACTTTATTTTGATTTGATGTTGCATTGCAATTATTTTAGATAATGGAAATGGGTTACATCTCCGGCTTCTGTCCATAGGCACACAACCAAAAAGTCCAGAAGTGAACAGAAAAGAGCTTAAAAAAGGCGAGATGGGACAAATCCCCAACTTTTGCCGATAATATGATCTACTAAATAATATTTTTTAAAATCACGTAGATTCTATCACGAAATTCTGTAGGTACTACGCTATCCAAACTAGAATAAAAGTTCCTTGGCTACGTACCAATTCCAAGCGTGTAGCACCATT]
[+] EMBL AK111111 [CTCTCTTTCTCTCCCCTCAACACCGTAGCACTGCTTCTCGCGACCACGCGAAGAGGGAGGAGGAGGCTAGCGACCACGCCGACAGGGGTGGGGGCGGCACGACACGACGGTGGTGGGGTCGTGCATCGCGGCGGCGGTCGCCGTTGGCATCTTGCTCGGCTGCTTGTGCACCTTCCTCTACCCCGATGGGCTCCTCTCCTGCTGCTCCAACGCCGCCCTCCATTGGCCTCGCCAGGTAAACCACCTCTGCACCTATCTCCCCCATCCCCGCCGGCGGTGGGCGTAGTGGCGCTACAGCAAGAACAGCCGCCGCCGGTGATGGAGGTGGACTCGCCGGCGACCGGAGATGAAGAAGATGGAGGTGGGTTTATTTTGATGAAGACGGAGACGGGTTTATTTAGTTGGAGTTTAGGGATGTTACATCCTACTGTTTTAGCTTGTTGCACTCTATTGTAGTAAGCTGTTTCACTTTATTTTGATTTGATGTTGCATTG ]
[+] EMBL CF324028 [ GCCTCGCCAGGTAAACCACCTCTGCACCTATCTCCCCCATCCCCGCCGGCGGTGGGCGTAGTGGCGCTACAGCAAGAACAGCCGCCGCCGGTGATGGAGGTGGACTCGCCGGCGACCGGAGATGAAGAAGATGGAGGTGGGTTTATTTTGATGAAGACGGAGACGGGTTTATTTAGTTGGAGTTTAGGGATGTTACATCCTACTGTTTTAGCTTGTTGCACTCTATTGTAGTAAGCTGTTTCACTTTATTTTGATTTGATGTTGCATTGCAATTATTTTAGATAATGGAAATGGGTTACATCTCCGGCTTCTGTCCATAGGCACACAACCAAAAAGTCCAGAAGTGAACAGAAAAGAGCTTAAAAAAGGCGAGATGGGACAAATCCCCAACTTTTGCCGATAATATGATCTACTAAATAATATTTTTTAAAATCACGTAGATTCTATCACGAAATTCTGTAGGTACTACGCTATCCAAACTAGAATAAAAGTTCCTTGGCTACGTACCAATTCCAAGCGTGTAGCACCATT]
consensusID : consensus_10111#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 658 fasta sequence
[TCCCTCATCCACTCGTTCTCTGCCCCTCTCTCTCCTTTCTGTCTCTCACGAAGGACCAAAAGCGGCGCTGCTCGCTGCTCGTCGGCACGGTTGGGCCATAGCTGCCGTGAGCAGCTAGGCGTCCTCCCCGTGCGGCTCTCCGCAGGAACTCCGCGCGGCGTCGACGATGGCGGCTGCGAGCTCCGTGCGGCATCGACGACATGCGGACGCGGCTAAGCTCCACGGCATCGACGACAACGGTCGAGCTCCGTGCGGCGCTGAGGACGGTGACGGAGCTCCACGCGGCCGAGCTCCGTGCGGCGCCGACGAAGGCAGCCAAGCTCCGTGGGGCCGGCGACCATGCGTTGAAGAAGATGGAGCGTAGGTTT-GTTTTGTTGGTGTTTT-AGGGATG-TTGCATTCTACTGTTAAGCTCGTTGCACTATGTGTATTAAGGTGTTTCATTTTGTTTTGATTTAATGTTGCATTGCAATCTATTGTATATGTTTTGTTGCACTCTATTTTATTCGTGTGTTTCATCCTTGTTTTATTGGATGTTGCATATGATGTACAATGTGTTTTCTTCGATGTTGCAGAGTAGAGTCCTGATGTTGCGAGTCGTGTTTTTTCATTGTTTCATCTGATTGAAACATTTCTCATCGAGTAATGAAACATTGAAACA]
[+] EMBL C74093 [TCCCTCATCCACTCGTTCTCTGCCCCTCTCTCTCCTTTCTGTCTCTCACGAAGGACCAAAAGCGGCGCTGCTCGCTGCTCGTCGGCACGGTTGGGCCATAGCTGCCGTGAGCAGCTAGGCGTCCTCCCCGTGCGGCTCTCCGCAGGAACTCCGCGCGGCGTCGACGATGGCGGCTGCGAGCTCCGTGCGGCATCGACGACATGCGGACGCGGCTAAGCTCCACGGCATCGACGACAACGGTCGAGCTCCGTGCGGCGCTGAGGACGGTGACGGAGCTCCACGCGGCCGAGCTCCGTGCGGCGCCGACGAAGGCAGCCAAGCTCCGTGGGGCCGGCGACCATGCGTTGAAGAAGATGGAGCGTAGGTTT GTTTTGTTGGTGTTTT AGGGATG TTGCATTCTACTGTTAAGCTCGTTGCACTATGTGTATTAAGGTGTTTCATTTTGTTTTGATTTAATGTTGCATTGCAATCTATTGTATATGTTTTGTTGCACTCTATTTTATTCGTGTGTTTCATCCTTGTTTTATTGGATGTTGCATATGATGTACAATGTGTTTTCTTCG ]
[+] EMBL AK120190 [ TCTCTCACGAAGGACCAAAAGCGGCGCTGCTCGCTGCTCGTCGGCACGGTTGGGCCATAGCTGCCGTGAGCAGCTAGGCGTCCTCCCCGTGCGGCTCTCCGCAGGAACTCCGCGCGGCGTCGACGATGGCGGCTGCGAGCTCCGTGCGGCATCGACGACATGCGGACGCGGCTAAGCTCCACGGCATCGACGACAACGGTCGAGCTCCGTGCGGCGCTGAGGACGGTGACGGAGCTCCACGCGGCCGAGCTCCGTGCGGCGCCGACGAAGGCAGCCAAGCTCCGTGGGGCCGGCGACCATGCGTTGAAGAAGATGGAGCGTAGGTTT GTTTTGTTGGTGTTTT AGGGATG TTGCATTCTACTGTTAAGCTCGTTGCACTATGTGTATTAAGGTGTTTCATTTTGTTTTGATTTAATGTTGCATTGCAATCTATTGTATATGTTTTGTTGCACTCTATTTTATTCGTGTGTTTCATCCTTGTTTTATTGGATGTTGCATATGATGTACAATGTGTTTTCTTCGATGTTGCAGAGTAGAGTCCTGATGTTGCGAGTCGTGTTTTTTCATTGTTTCATCTGATTGAAACATTTCTCATCGAGTAATGAAACATTGAAACA]
[+] EMBL OSS11203A [ GCGCTGCTCGCTGCTCGTCGGCACGGTTGGGCCATAGCTGCAGTGAGCAGCTAGGCGTCCTCCCCGTGCANCTCTCCGCAGGAACTCCGCGCGGCGTCGACGATGGCGGCTGCNAGCTCCGTGCGGCATCGACGACATGCGGACGCGGCTAAGCTCCACGGCATCGACGACAACGGTCGAGCTCCGTGCGGCGCTGAGGACGGTGACGGAGCTCCACGCGGCCGAGCTCCGTGCGGCGCCGACGAAGGCAGCCAAGCTCCGTGGGGCCGGCGACCATGCGTTGAAGAAGATGGAGCNTAGGTTTNNTTTTGTTGGTGTTTTAAGGGATGTTTGCATTCTACTGTTA ]
[+] EMBL AU029439 [ CCGTGAGCAGCTAGGCGTCCTCCCCGTGCGGCTCTCCGCAGGAACTCCGCGCGGCGTCGACGATGGCGGCTGCGAGCTCCGTGCGGCATCGACGACATGCGGACGCGGCTAAGCTCCACGGCATCGACGACAACGGTCGAGCTCCGTGCGGCGCTGAGGACGGTGACGGAGCTCCACGCGGCCGAGCTCCGTGCGGCGCCGACGAAGGCAGCCAAGCTCCGTGGGGCCGGCGACCATGCGTTGAAGAAGATGGAGCGTAGGTTT GTTTTGTTGGTGTTTT AGGGATG TTGCATTCTACTGTTAAGCCCGTTGCACTATGTGTATTAAGGTGTTTCATTTTGTTTTGATTTAATGTTGCATTGCAATCTATTGTATATGTTTTGTTGCACTCTATTTTATTCGTGTGTTTCATCCTTGTTTTATTGGATGTTGCATATGATGTACAATGTGTTTTCTTCGATGTTGCAaaaaa ]
consensusID : consensus_10111#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence
[ACCATGCGAAGAGGGAGGAGGAGTTTAGCGACCACGCCGACGATGGTGGCGCGGCGCGACACGACGGTGGTGGGGTCGCGCATCGCGGCCGCGGTCGCCATCGGCGTCGCGCTCAGTTGTGTGTGAGCCTTCATCTACCCCGACGGGCTCCTCTCCCGCTCCTCCGACACCGCCCTCCATTGGCCTTACTAGGTAAACCGCCTCTGCGCCTATCTCCCCCATCCTCGGCGGCGGTGGGCGCGGTGGCGCTGCAGCAGGAACAGCTGCCGCCGCCGCAGTAGATGGCGGCGCCGCCGGTGATGGAGGTGGACTCACCGACGACCGGAGATGAAGAAGATGAAGGTGTGTTTATTTTGTTGAAGAAGATGGAGACGGGTTTGTTTAGTTGGAGTTTAGGGATGTTACATCCTACTGTTTTAGCTTGTTGCACTCTGTTGCATTAAGGTGTTTCACTTTATTTTGATTTGATGTTGCATTGCAATCTATTGTATATGTTTGTTGCACTCTATTTTATTCGTGTGTTTCATCGGATGTTCAACATGATGTACGATGTGTTTTCTTCGATGTTGCAGAATAGAGTCTTGA]
[+] EMBL AK100734 [ACCATGCGAAGAGGGAGGAGGAGTTTAGCGACCACGCCGACGATGGTGGCGCGGCGCGACACGACGGTGGTGGGGTCGCGCATCGCGGCCGCGGTCGCCATCGGCGTCGCGCTCAGTTGTGTGTGAGCCTTCATCTACCCCGACGGGCTCCTCTCCCGCTCCTCCGACACCGCCCTCCATTGGCCTTACTAGGTAAACCGCCTCTGCGCCTATCTCCCCCATCCTCGGCGGCGGTGGGCGCGGTGGCGCTGCAGCAGGAACAGCTGCCGCCGCCGCAGTAGATGGCGGCGCCGCCGGTGATGGAGGTGGACTCACCGACGACCGGAGATGAAGAAGATGAAGGTGTGTTTATTTTGTTGAAGAAGATGGAGACGGGTTTGTTTAGTTGGAGTTTAGGGATGTTACATCCTACTGTTTTAGCTTGTTGCACTCTGTTGCATTAAGGTGTTTCACTTTATTTTGATTTGATGTTGCATTGCAATCTATTGTATATGTTTGTTGCACTCTATTTTATTCGTGTGTTTCATCGGATGTTCAACATGATGTACGATGTGTTTTCTTCGATGTTGCAGAATAGAGTCTTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10111#0 CTCTCTTTCTCTCCCCTCAACACCGTAGCACTGCTTCTCGCGACCACGCGAAGAGGGAGG 60
consensus_10111#2 ------------------------------------------ACCATGCGAAGAGGGAGG 18
consensus_10111#1 -----------------------------------TCCCTCATCCACTCGTTCTCTGCCC 25
*** ** *
consensus_10111#0 AGGAGGCTAGCGACCA-CGCCGACAGGGG--TGGGGGCGGCACGACACGACGGTGGTGGG 117
consensus_10111#2 AGGAGTTTAGCGACCA-CGCCGACGATGG--TGGCG-CGGCGCGACACGACGGTGGTGGG 74
consensus_10111#1 CTCTCTCTCCTTTCTGTCTCTCACGAAGGACCAAAAGCGGCGCTGCTCGCTGCTCGTCGG 85
* * * * ** ** **** * * ** * * ** **
consensus_10111#0 GTCGTGCATCGCGGCGGCGGTCGCCGTTGGCATCTTGCTCGGCTGCTTGTGCACCTTCCT 177
consensus_10111#2 GTCGCGCATCGCGGCCGCGGTCGCCATCGGCGTCGCGCTCAGTTGTGTGTGAGCCTTCAT 134
consensus_10111#1 CACG---GTTG-GGCCATAGCTGCCGTGAGCAGCTAGGCGTCCTCCCCGTGCGGCTCTCC 141
** * * *** * *** * ** * * * *** **
consensus_10111#0 CTACCCCGATGGGCTCCTCTCCTGCTGCTCCAACGCCGCCCTCCATTGGCCTCGCCAGGT 237
consensus_10111#2 CTACCCCGACGGGCTCCTCTCCCGCTCCTCCGACACCGCCCTCCATTGGCCTTACTAGGT 194
consensus_10111#1 GCAGGA-ACTCCGCGCGGCGTCGACGATGGCGGCTGCGAGCTCCGT--GCGGCATC-GAC 197
* ** * * * * * * ** **** * ** *
consensus_10111#0 AAACCACCTCTGCACCTATCTCCCCCATCCCCGCCGGCGGTGGGCGTAGTG-GCGCTACA 296
consensus_10111#2 AAACCGCCTCTGCGCCTATCTCCCCCATCCTCGGCGGCGGTGGGCGCGGTG-GCGCTGCA 253
consensus_10111#1 GACATGCGGACGCGGCTAAGCTCCACGGCATCGACGACAACGGTCGAGCTCCGTGCGGCG 257
* * ** *** ** * * ** ** * ** ** * * ** *
consensus_10111#0 GCAAGAACAGC------------------------CGCCGCCGGTGATGGAGGTGGACTC 332
consensus_10111#2 GCAGGAACAGCTGCCGCCGCCGCAGTAGATGGCGGCGCCGCCGGTGATGGAGGTGGACTC 313
consensus_10111#1 CTGAGGACGGTGAC------------GGAGCTCCACGCGGCCGA-GCTCCGTGCGG---C 301
* ** * *** **** * * * ** *
consensus_10111#0 GCCGGCGACCGGAGATGAAGAAGATGGAGGTGGGTTTATTTTGATGAAGA---CGGAG-A 388
consensus_10111#2 ACCGACGACCGGAGATGAAGAAGATGAAGGTGTGTTTATTTTGTTGAAGAAGATGGAG-A 372
consensus_10111#1 GCCGACGAAGGCAGCCAAGCTCCGTGGGGCCGGCGACCATGCGTTGAAGAAGATGGAGCG 361
*** *** * ** * ** * * * * ****** ****
consensus_10111#0 CGGGTTTATTTAGTTGGAGTTT-AGGGATGTTACATCCTACTGTTTTAGCTTGTTGCACT 447
consensus_10111#2 CGGGTTTGTTTAGTTGGAGTTT-AGGGATGTTACATCCTACTGTTTTAGCTTGTTGCACT 431
consensus_10111#1 TAGGTTTGTTTTGTTGGTGTTTTAGGGATGTTGCATTCTACTGTTA-AGCTCGTTGCACT 420
***** *** ***** **** ********* *** ******** **** ********
consensus_10111#0 CTATTGTAGTAAGCTGTTTCACTTTATTTTGATTTGATGTTGCATTGCAAT-TATTTTAG 506
consensus_10111#2 CTGTTGCATTAAGGTGTTTCACTTTATTTTGATTTGATGTTGCATTGCAATCTATTGTAT 491
consensus_10111#1 ATGT-GTATTAAGGTGTTTCATTTTGTTTTGATTTAATGTTGCATTGCAATCTATTGTAT 479
* * * * **** ******* *** ********* *************** **** **
consensus_10111#0 ATAATG-GAAATGGGTTACATCTCCGG-----------CTTCTGTCCATAGGCACACAAC 554
consensus_10111#2 ATGTTT-GTTGCACTCTATTTTATTCG-----------TGTGTTTCATCGGATGTTCAAC 539
consensus_10111#1 ATGTTTTGTTGCACTCTATTTTATTCGTGTGTTTCATCCTTGTTTTATTGGATGTTGCAT 539
** * * ** * * * * * * *
consensus_10111#0 CAAAAAGTCCAGAAGTGAACAGAAAAGAGCTTAAAAAAGGCGAGATGGGACAAATCCCCA 614
consensus_10111#2 -ATGATGTAC-GATGTGTTTTCTTCGATGTTGCAGAATAGAGTCTTGA------------ 585
consensus_10111#1 -ATGATGTAC-AATGTGTTTTCTTCGATGTTGCAGAGTAGAGTCCTGATGTTGCGAGTCG 597
* * ** * * *** * * * * * * **
consensus_10111#0 ACTTTTGCCGATAATATGATCTACTAAATAATATTTTTTAAAATCACGTAG-ATTCTATC 673
consensus_10111#2 ------------------------------------------------------------
consensus_10111#1 TGTTTTTTCATTGTTTCATCTGATTGAAACATTTCTCATCGAGTAATGAAACATTGAAAC 657
consensus_10111#0 ACGAAATTCTGTAGGTACTACGCTATCCAAACTAGAATAAAAGTTCCTTGGCTACGTACC 733
consensus_10111#2 ------------------------------------------------------------
consensus_10111#1 A----------------------------------------------------------- 658
consensus_10111#0 AATTCCAAGCGTGTAGCACCATT 756
consensus_10111#2 -----------------------
consensus_10111#1 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||