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Oryza sativa
cluster # 10122 cluster # 10122       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10122#0 length = 2708 sequences # 5  
consensus_10122#1 length = 665 sequences # 1  
consensus_10122#2 length = 418 sequences # 1  

consensusID : consensus_10122#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2708
fasta sequence
                              [CCGAACCCTCTGCATCCCCCTAAACCTTTCTCCGCTCCTCCCCGCCGTCGCCGCCGCCAGCAACCCTAGCCCTCCTCCGCCGTCGCCGGTGATAACCTCTCCCATCGCCGTACGTCCCCAGGATCCCTTCCCATCCTCCTCCCTTATCCCGTCTCTTTAGTCTCGCCGTGGGGGGCAGGGTGGAAGAGCCGCCGCCGGCGGAGCGCCGAGAATGGCGTGGCGGATGCTGCGACGGAAGGATTTTCACACGGGCCTTGTGAATTTGGCCTCCCGTGTGGATCATGGGGGAGCGAAGAATTTTTCCAGTGGGACGTTTGGAAAGCTGGCTGACTTCGTTCTTAGCGATACTCATACACCCATTGTAAAAGGTGCTGCTAATTGTACGGCTTATAAACACTGCACTATCAGGAATTTTCATGCAGGTGTATACATGTTAGCATGGAGTAGGAAGCGTGAAGAAGTTGCAGGGTTAAAAGCACCTAAAAAGGAGAAGCGAGTGAAAAGAGAAACTAGAACTCAACCTCCTGTAGAAGCGCCATATGTTGCACCAAAACAAAAGATAGCTATCAAATCATCACCAGATAAAACAGTTGACATTTTTGATGGGATGACATTGCTTGATCTCTCCAAACGGACTGGTGCATCAATTGGTGCACTTCAAGACATACTCACAGATCTTGGTGAAAAGGTTGAATCAGAGTTCGACGCTATCAGCATTGATCTTGCTGAGTTAGTTGCTATGGAACTTGGTGTTAATATCAGAAGAATGCACACTGGTGAAGGCACACTTGAACCACGTCCTGCTGTGGTAACAATCATGGGCCATGTTGACCATGGTAAAACGTCACTTCTAGATTCCCTGCGTCAAACATCTGTTGCGGCTAAGGAAGCTGGTGGGATTACTCAACATATAGGTGCCTTTGTTGTTGAGATGCCATCAGGAGCCTCTATCACATTTCTTGATACACCAGGGCATGCTGCCTTTAGTGCAATGCGGGCTAGAGGTGCTGCTGTCACAGATATTGTAGTGCTTGTAGTTGCAGCTGATGATGGGGTGATGCCTCAAACACTTGAAGCTATGTCACATGCAAAAGCAGCCAATGTTCCCATTGTAGTTGCTGTAAACAAATGTGATAAATCTGGAGCCGATCCTGAGAGGGTCAGAATTCAGCTGGGTTCAGAAGGATTGCTTTTGGAGGATATGGGTGGTGATGTACAGGTTGTAGAAATTTCTGCAGTAACAAAACTTGGTTTGGACAAATTGGAAGAGGCTTTGCTCCTTCAGGCTGAGATAATGGACCTGAAAGCTAGAATTGATGGACCTGCCCAAGCTTTTGTGGTGGAGGCAAGAGTAGACAGAGGCAGGGGGCCATTGGCAACAGCTATAGTCAAGGCTGGCACATTAGTCAGCGGGCAGCACATTGTTGTGGGAGCAGAGTGGGGAAGAATTCGGTCTCTTAGAGATACTGCTGGGAAAATAACAGAGTCTGCAAAACCTGCAATGCCTGTTGAGATTGAGGGGTTAAGGGGCCTTCCAATGGCTGGGGATGATGTTGTGGTTGTTGACTCGGAAGAAAGGGCAAGAATGCTTAGTCAAGGACGGAAGAAAAAACAGGAAAAAGACAGGCTTCGAAAGATTGATGAAGACATGACAGAGGAGGCGGAAATTGGTGAAGAGACTCCTGAAAGAGTTGAGATGCCCATCATTGTGAAAGCTGATGTACAAGGCAGTGTTCAAGCAGTTACAGATGCCTTAAGAAGCCTTAATAGTCCACAGGTGTTTGTGAATATTGTTCATGTTGGTGTTGGCCCAATAAGCCAACATGACATTGATCTGGCACAAGCATGCCGGGCATATATAGTCGGTTTCAACATCCGTACTCCTCCAAGTGCTATCACTCTAGCAGCAACACAAGCCAACATAAAGATTTTGCTGCACAAGGTGATCTATCATCTCCTTGAAGAAATGGGACGGGAGATTGTCGAGAAGGCACCGGGCACCCCTGAGACCCAGGTTTCAGGGGAAGCCGAGGTTCTGAACATATTCGAG-CTGAAAGGGCGTAGCA-AGTCAAAAGGGCCTGACATAAAGATTGCCGGCTGCCGAATAACTGACGGGCACTTAAGCAAAACCGGGACGATGAGGCTTTTGAGGAGTGGAGATGTCGTCTTTGAGGGTCCA-TGCGCATCTCTGAAGCGGGAGAAGCA-GGACGCA-GAGACGGTCGACA-AGGGTAACGACTGTGGATTGGTGATTCAGGACTGTAACGATTTCCAGGTTGGGGACATCGTCCAGTGCTTGGAGCAGGTTATCAGGAAGCCCAAGTTCATCTCAACACAAAGCGGCGCGGTTCGGATAGAATGCTGATAGATGTTTAGTTGTTTTCTGCTTCCATTCGTGATCAACTAACCAAGATTTTGGCAGTGGAACAAGAGGGAGATGATCAAGTTGGTGCGCTTATTATTTTCTCGCCAACAAACTTGTTGCTGCAACCAATTTCAAACAGAAACCTCTATTCATATATGAGATGAAGACA-TGGTTAATCTTGTTCAGGTGCTTGTGTTTGTTGTACATTCCTGCAGTTTCCACAAGTTCTGCGAATAACGTGGATTACTGGATTAGTGAAAAGGTTATTGTTATTGACTTAATTATTATTACTGTATAATTGCAGCCACAGAAAGGCCATTTTTGCCGGTTCATGCGAGTCCAGGCT]

[+] EMBL AK065778             [CCGAACCCTCTGCATCCCCCTAAACCTTTCTCCGCTCCTCCCCGCCGTCGCCGCCGCCAGCAACCCTAGCCCTCCTCCGCCGTCGCCGGTGATAACCTCTCCCATCGCCGTACGTCCCCAGGATCCCTTCCCATCCTCCTCCCTTATCCCGTCTCTTTAGTCTCGCCGTGGGGGGCAGGGTGGAAGAGCCGCCGCCGGCGGAGCGCCGAGAATGGCGTGGCGGATGCTGCGACGGAAGGATTTTCACACGGGCCTTGTGAATTTGGCCTCCCGTGTGGATCATGGGGGAGCGAAGAATTTTTCCAGTGGGACGTTTGGAAAGCTGGCTGACTTCGTTCTTAGCGATACTCATACACCCATTGTAAAAGGTGCTGCTAATTGTACGGCTTATAAACACTGCACTATCAGGAATTTTCATGCAGGTGTATACATGTTAGCATGGAGTAGGAAGCGTGAAGAAGTTGCAGGGTTAAAAGCACCTAAAAAGGAGAAGCGAGTGAAAAGAGAAACTAGAACTCAACCTCCTGTAGAAGCGCCATATGTTGCACCAAAACAAAAGATAGCTATCAAATCATCACCAGATAAAACAGTTGACATTTTTGATGGGATGACATTGCTTGATCTCTCCAAACGGACTGGTGCATCAATTGGTGCACTTCAAGACATACTCACAGATCTTGGTGAAAAGGTTGAATCAGAGTTCGACGCTATCAGCATTGATCTTGCTGAGTTAGTTGCTATGGAACTTGGTGTTAATATCAGAAGAATGCACACTGGTGAAGGCACACTTGAACCACGTCCTGCTGTGGTAACAATCATGGGCCATGTTGACCATGGTAAAACGTCACTTCTAGATTCCCTGCGTCAAACATCTGTTGCGGCTAAGGAAGCTGGTGGGATTACTCAACATATAGGTGCCTTTGTTGTTGAGATGCCATCAGGAGCCTCTATCACATTTCTTGATACACCAGGGCATGCTGCCTTTAGTGCAATGCGGGCTAGAGGTGCTGCTGTCACAGATATTGTAGTGCTTGTAGTTGCAGCTGATGATGGGGTGATGCCTCAAACACTTGAAGCTATGTCACATGCAAAAGCAGCCAATGTTCCCATTGTAGTTGCTGTAAACAAATGTGATAAATCTGGAGCCGATCCTGAGAGGGTCAGAATTCAGCTGGGTTCAGAAGGATTGCTTTTGGAGGATATGGGTGGTGATGTACAGGTTGTAGAAATTTCTGCAGTAACAAAACTTGGTTTGGACAAATTGGAAGAGGCTTTGCTCCTTCAGGCTGAGATAATGGACCTGAAAGCTAGAATTGATGGACCTGCCCAAGCTTTTGTGGTGGAGGCAAGAGTAGACAGAGGCAGGGGGCCATTGGCAACAGCTATAGTCAAGGCTGGCACATTAGTCAGCGGGCAGCACATTGTTGTGGGAGCAGAGTGGGGAAGAATTCGGTCTCTTAGAGATACTGCTGGGAAAATAACAGAGTCTGCAAAACCTGCAATGCCTGTTGAGATTGAGGGGTTAAGGGGCCTTCCAATGGCTGGGGATGATGTTGTGGTTGTTGACTCGGAAGAAAGGGCAAGAATGCTTAGTCAAGGACGGAAGAAAAAACAGGAAAAAGACAGGCTTCGAAAGATTGATGAAGACATGACAGAGGAGGCGGAAATTGGTGAAGAGACTCCTGAAAGAGTTGAGATGCCCATCATTGTGAAAGCTGATGTACAAGGCAGTGTTCAAGCAGTTACAGATGCCTTAAGAAGCCTTAATAGTCCACAGGTGTTTGTGAATATTGTTCATGTTGGTGTTGGCCCAATAAGCCAACATGACATTGATCTGGCACAAGCATGCCGGGCATATATAGTCGGTTTCAACATCCGTACTCCTCCAAGTGCTATCACTCTAGCAGCAACACAAGCCAACATAAAGATTTTGCTGCACAAGGTGATCTATCATCTCCTTGAAGAAATGGGACGGGAGATTGTCGAGAAGGCACCGGGCACCCCTGAGACCCAGGTTTCAGGGGAAGCCGAGGTTCTGAACATATTCGAG CTGAAAGGGCGTAGCA AGTCAAAAGGGCCTGACATAAAGATTGCCGGCTGCCGAATAACTGACGGGCACTTAAGCAAAACCGGGACGATGAGGCTTTTGAGGAGTGGAGATGTCGTCTTTGAGGGTCCA TGCGCATCTCTGAAGCGGGAGAAGCA GGACGCA GAGACGGTCGACA AGGGTAACGACTGTGGATTGGTGATTCAGGACTGTAACGATTTCCAGGTTGGGGACATCGTCCAGTGCTTGGAGCAGGTTATCAGGAAGCCCAAGTTCATCTCAACACAAAGCGGCGCGGTTCGGATAGAATGCTGATAGATGTTTAGTTGTTTTCTGCTTCCATTCGTGATCAACTAACCAAGATTTTGGCAGTGGAACAAGAGGGAGATGATCAAGTTGGTGCGCTTATTATTTTCTCGCCAACAAACTTGTTGCTGCAACCAATTTCAAACAGAAACCTCTATTCATATATGAGATGAAGACA TGGTTAATCTTGTTCAGGTGCTTGTGTTTGTTGTACATTCCTGCAGTTTCCACAAGTTCTGCGAATAACGTGGATTACTGGATTAGTGAAAAGGTTATTGTTATTGACTTAATTATTATTACTGTATAATTGCAGCCACGGAAAGGCCATTTTTGCCGGTTCATGCGAGTCCAGGCT]
[+] EMBL BI813821             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GTTTCA GGGAAGCCGA GTTCTGAACATATTCGAGCCTGAAAGGGCGTACCACAGTCCAAA GGCCTGACATAAAGATTGCC GCTGCCGAATAACTGAC GGCACTTAA CCAAACCGGGACGATGAGGCTTTTGAGGA TGGAGAT TCGTCTTTGAGGGTCCACTGCGCATCTCTGAAGCGGGAGAA CACGGACGCACGAGAC GTCGACACAGGGTAACGACTGTGGATTGGTGATTCAGGACTGTAACGATTTCCA GTTGGGGACATCGTCCAGTGCTTGGA CAGGTTATCAGGAAGCCCAAGTTCATCTCAACAC AAGCGGCGCGGTTCGGATAGAATGCTGATAGATGTTTAGTTGTTTTCTGCTTCCATTCGTGATCAACTAACCAAGATTTTGGCAGTGGAACCAGAGGGAGATGGTCAAGTTGGTGCGCTTATTACTTTCTCGCCAAC AACTTGTTGCTGCAATCAATTTC AACAGAAACCTCTATTCATATATGAGATGAAGACACTGGTTAATCTTGTTCAaaaaa                                                                                                                                                            ]
[+] EMBL CA923267             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AAGCGGCGCGGTTCGGATAGAATGCTGATAGATGTTTAGTTGTTTTCTGCTTCCATTCGTGATCAACTAACCAAGATTTTGGCAGTGGAACAAGAGGGAGATGATCAAGTTGGTGCGCTTATTATTTTCTCGCCAACAAACTTGTTGCTGCAACCAATTTCAAACAGAAACCTCTATTCATATATGAGATGAAGACA TGGTTAATCTTGTTCAGGTGCTTG                                                                                                                                                         ]
[+] EMBL C98201               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      cgGCTTATTATTTTCTCGCCAACAAACTTGTTGCTGCAACCAATTTCAAACAGAAACCTCTATTCATATATGAGATGAAGACA TGGTTAATCTTGTTCAGGTGCTTGTGTTTGTTGTACATTCCTGCAGTTTCCACAAGTTCTGCGAATAACGTGGATTACTGGATTAGTGAAAAGGTTATTGTTATTGACTTAATTATTATTACTGTATAATTGCAGCCACAGAAAGGCCATTTTTGCCGGTTCAaaaaa         ]
[+] EMBL OS1066A              [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 nTTCTCGCCAACAAACNNGNTGCTGCAACCAANNTCAAACAGAAACCTCNATTCANNNATGAGATGAAGACA TGGNTAATCTTGTTCAGGNGCTTGNGTTTGNTGNACATTCCTGCAGTTTCCACAAGTTCTGCGAATAACGTGGATTACTGGATTAGTGAAAAGGTTATTGTTATTGACTTAATTATTATTACTGTATAATTGCAGCCACAGAAAGGCCATTTT                        ]


>consensus_10122#0 CCGAACCCTCTGCATCCCCCTAAACCTTTCTCCGCTCCTCCCCGCCGTCGCCGCCGCCAG CAACCCTAGCCCTCCTCCGCCGTCGCCGGTGATAACCTCTCCCATCGCCGTACGTCCCCA GGATCCCTTCCCATCCTCCTCCCTTATCCCGTCTCTTTAGTCTCGCCGTGGGGGGCAGGG TGGAAGAGCCGCCGCCGGCGGAGCGCCGAGAATGGCGTGGCGGATGCTGCGACGGAAGGA TTTTCACACGGGCCTTGTGAATTTGGCCTCCCGTGTGGATCATGGGGGAGCGAAGAATTT TTCCAGTGGGACGTTTGGAAAGCTGGCTGACTTCGTTCTTAGCGATACTCATACACCCAT TGTAAAAGGTGCTGCTAATTGTACGGCTTATAAACACTGCACTATCAGGAATTTTCATGC AGGTGTATACATGTTAGCATGGAGTAGGAAGCGTGAAGAAGTTGCAGGGTTAAAAGCACC TAAAAAGGAGAAGCGAGTGAAAAGAGAAACTAGAACTCAACCTCCTGTAGAAGCGCCATA TGTTGCACCAAAACAAAAGATAGCTATCAAATCATCACCAGATAAAACAGTTGACATTTT TGATGGGATGACATTGCTTGATCTCTCCAAACGGACTGGTGCATCAATTGGTGCACTTCA AGACATACTCACAGATCTTGGTGAAAAGGTTGAATCAGAGTTCGACGCTATCAGCATTGA TCTTGCTGAGTTAGTTGCTATGGAACTTGGTGTTAATATCAGAAGAATGCACACTGGTGA AGGCACACTTGAACCACGTCCTGCTGTGGTAACAATCATGGGCCATGTTGACCATGGTAA AACGTCACTTCTAGATTCCCTGCGTCAAACATCTGTTGCGGCTAAGGAAGCTGGTGGGAT TACTCAACATATAGGTGCCTTTGTTGTTGAGATGCCATCAGGAGCCTCTATCACATTTCT TGATACACCAGGGCATGCTGCCTTTAGTGCAATGCGGGCTAGAGGTGCTGCTGTCACAGA TATTGTAGTGCTTGTAGTTGCAGCTGATGATGGGGTGATGCCTCAAACACTTGAAGCTAT GTCACATGCAAAAGCAGCCAATGTTCCCATTGTAGTTGCTGTAAACAAATGTGATAAATC TGGAGCCGATCCTGAGAGGGTCAGAATTCAGCTGGGTTCAGAAGGATTGCTTTTGGAGGA TATGGGTGGTGATGTACAGGTTGTAGAAATTTCTGCAGTAACAAAACTTGGTTTGGACAA ATTGGAAGAGGCTTTGCTCCTTCAGGCTGAGATAATGGACCTGAAAGCTAGAATTGATGG ACCTGCCCAAGCTTTTGTGGTGGAGGCAAGAGTAGACAGAGGCAGGGGGCCATTGGCAAC AGCTATAGTCAAGGCTGGCACATTAGTCAGCGGGCAGCACATTGTTGTGGGAGCAGAGTG GGGAAGAATTCGGTCTCTTAGAGATACTGCTGGGAAAATAACAGAGTCTGCAAAACCTGC AATGCCTGTTGAGATTGAGGGGTTAAGGGGCCTTCCAATGGCTGGGGATGATGTTGTGGT TGTTGACTCGGAAGAAAGGGCAAGAATGCTTAGTCAAGGACGGAAGAAAAAACAGGAAAA AGACAGGCTTCGAAAGATTGATGAAGACATGACAGAGGAGGCGGAAATTGGTGAAGAGAC TCCTGAAAGAGTTGAGATGCCCATCATTGTGAAAGCTGATGTACAAGGCAGTGTTCAAGC AGTTACAGATGCCTTAAGAAGCCTTAATAGTCCACAGGTGTTTGTGAATATTGTTCATGT TGGTGTTGGCCCAATAAGCCAACATGACATTGATCTGGCACAAGCATGCCGGGCATATAT AGTCGGTTTCAACATCCGTACTCCTCCAAGTGCTATCACTCTAGCAGCAACACAAGCCAA CATAAAGATTTTGCTGCACAAGGTGATCTATCATCTCCTTGAAGAAATGGGACGGGAGAT TGTCGAGAAGGCACCGGGCACCCCTGAGACCCAGGTTTCAGGGGAAGCCGAGGTTCTGAA CATATTCGAGCTGAAAGGGCGTAGCAAGTCAAAAGGGCCTGACATAAAGATTGCCGGCTG CCGAATAACTGACGGGCACTTAAGCAAAACCGGGACGATGAGGCTTTTGAGGAGTGGAGA TGTCGTCTTTGAGGGTCCATGCGCATCTCTGAAGCGGGAGAAGCAGGACGCAGAGACGGT CGACAAGGGTAACGACTGTGGATTGGTGATTCAGGACTGTAACGATTTCCAGGTTGGGGA CATCGTCCAGTGCTTGGAGCAGGTTATCAGGAAGCCCAAGTTCATCTCAACACAAAGCGG CGCGGTTCGGATAGAATGCTGATAGATGTTTAGTTGTTTTCTGCTTCCATTCGTGATCAA CTAACCAAGATTTTGGCAGTGGAACAAGAGGGAGATGATCAAGTTGGTGCGCTTATTATT TTCTCGCCAACAAACTTGTTGCTGCAACCAATTTCAAACAGAAACCTCTATTCATATATG AGATGAAGACATGGTTAATCTTGTTCAGGTGCTTGTGTTTGTTGTACATTCCTGCAGTTT CCACAAGTTCTGCGAATAACGTGGATTACTGGATTAGTGAAAAGGTTATTGTTATTGACT TAATTATTATTACTGTATAATTGCAGCCACAGAAAGGCCATTTTTGCCGGTTCATGCGAG TCCAGGCT



consensusID : consensus_10122#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 665
fasta sequence
                              [GGGCGCCGGGCCCCCCCTAAAGGTTAACGGTATCGATAAGCGTCATTAGAGGCGCAGCCAAGGGGCGCGGGCAGTTAAGCAAATCCGGGGACGATGAGGCTTTTCGGGAGTGGACAGGTTGTCTTTCAGGGTCCCTGCGGATCTCTGAAGCGGGAGAAGCAGGCCGTAGAGACGGTCGACAAGGGTAACCACTGTGGATTGGTGATTCAGGACTGTAACGATTTCCAGGTTGGGGACATCGTCCAGTGCTTGGAGCAGGTTATCAGGAAGCCCAAGTTTATCTCAACACAAAGCGGCGCGGTTTGGATAGAATGCTGATAGATGTTTAGTTGTTTTTTGCTTCCATTCGTGATCAACTAACCAAGATTTTGGCAGTGGAACAAGAGGGAGATGGTCAAGTTGGTGCGCTTATTACTTTCTCGCCAACAAACTTGTTGCTGCAATCAATTTCAAACAGAAACCTCTATTTATATTTGAGATGAAGACATGGTTAATCTTGTTCAGGTGCTCGTGTTTGTTGTACATTCCTGCAGTTTCCACAAGTTTTGCGAATAACGTGGATTACTGGATTAGTGAAAAGGTTATTGTTATTGACTTAATTATTATTACTGTATAATTGCAGCCACAGAAAGGCCATTTTTGCCGGTTAAAAAAAAAAAAAAAAA]

[-] EMBL CA763757             [GGGCGCCGGGCCCCCCCTAAAGGTTAACGGTATCGATAAGCGTCATTAGAGGCGCAGCCAAGGGGCGCGGGCAGTTAAGCAAATCCGGGGACGATGAGGCTTTTCGGGAGTGGACAGGTTGTCTTTCAGGGTCCCTGCGGATCTCTGAAGCGGGAGAAGCAGGCCGTAGAGACGGTCGACAAGGGTAACCACTGTGGATTGGTGATTCAGGACTGTAACGATTTCCAGGTTGGGGACATCGTCCAGTGCTTGGAGCAGGTTATCAGGAAGCCCAAGTTTATCTCAACACAAAGCGGCGCGGTTTGGATAGAATGCTGATAGATGTTTAGTTGTTTTTTGCTTCCATTCGTGATCAACTAACCAAGATTTTGGCAGTGGAACAAGAGGGAGATGGTCAAGTTGGTGCGCTTATTACTTTCTCGCCAACAAACTTGTTGCTGCAATCAATTTCAAACAGAAACCTCTATTTATATTTGAGATGAAGACATGGTTAATCTTGTTCAGGTGCTCGTGTTTGTTGTACATTCCTGCAGTTTCCACAAGTTTTGCGAATAACGTGGATTACTGGATTAGTGAAAAGGTTATTGTTATTGACTTAATTATTATTACTGTATAATTGCAGCCACAGAAAGGCCATTTTTGCCGGTTAAAAAAAAAAAAAAAAA]


>consensus_10122#1 GGGCGCCGGGCCCCCCCTAAAGGTTAACGGTATCGATAAGCGTCATTAGAGGCGCAGCCA AGGGGCGCGGGCAGTTAAGCAAATCCGGGGACGATGAGGCTTTTCGGGAGTGGACAGGTT GTCTTTCAGGGTCCCTGCGGATCTCTGAAGCGGGAGAAGCAGGCCGTAGAGACGGTCGAC AAGGGTAACCACTGTGGATTGGTGATTCAGGACTGTAACGATTTCCAGGTTGGGGACATC GTCCAGTGCTTGGAGCAGGTTATCAGGAAGCCCAAGTTTATCTCAACACAAAGCGGCGCG GTTTGGATAGAATGCTGATAGATGTTTAGTTGTTTTTTGCTTCCATTCGTGATCAACTAA CCAAGATTTTGGCAGTGGAACAAGAGGGAGATGGTCAAGTTGGTGCGCTTATTACTTTCT CGCCAACAAACTTGTTGCTGCAATCAATTTCAAACAGAAACCTCTATTTATATTTGAGAT GAAGACATGGTTAATCTTGTTCAGGTGCTCGTGTTTGTTGTACATTCCTGCAGTTTCCAC AAGTTTTGCGAATAACGTGGATTACTGGATTAGTGAAAAGGTTATTGTTATTGACTTAAT TATTATTACTGTATAATTGCAGCCACAGAAAGGCCATTTTTGCCGGTTAAAAAAAAAAAA AAAAA



consensusID : consensus_10122#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 418
fasta sequence
                              [GATGAGGCTTTTGAGGAGTGGAGATATCGGTCTTTGAGGGTCCATGCGCATCTCTGAAGCGGGAGAAGCNGGACGCAGAGACGGTCGACAAGGGTAACGACTGTGGATTGGTGATTCAGGACTGTAACGATTTCCCGGTTGGGGACATCGTCCCGTGCTTGGACCCGGTTATCCGGAAGCCCCAGTTCATCTCAACNCCAAGCGGCGCGGTTCGGATAGAATGCTGATAGATGTTTAGTTGTNTTCTGCTTCCCTTCGTGATCNACTAACCCAGATTTTGGCCCGTGGAACCAGAGGGAGATGATCCAGTTGGTGCGCTTATTATTTTCTCGCCCACCAACTTGTTGCTGCNACCCATTTCCANCCGAAACCTCTATTCATATATGAGATGAAGACCCTGGTTAATCTAAAAAAAAAA]

[+] EMBL BI807181             [GATGAGGCTTTTGAGGAGTGGAGATATCGGTCTTTGAGGGTCCATGCGCATCTCTGAAGCGGGAGAAGCNGGACGCAGAGACGGTCGACAAGGGTAACGACTGTGGATTGGTGATTCAGGACTGTAACGATTTCCCGGTTGGGGACATCGTCCCGTGCTTGGACCCGGTTATCCGGAAGCCCCAGTTCATCTCAACNCCAAGCGGCGCGGTTCGGATAGAATGCTGATAGATGTTTAGTTGTNTTCTGCTTCCCTTCGTGATCNACTAACCCAGATTTTGGCCCGTGGAACCAGAGGGAGATGATCCAGTTGGTGCGCTTATTATTTTCTCGCCCACCAACTTGTTGCTGCNACCCATTTCCANCCGAAACCTCTATTCATATATGAGATGAAGACCCTGGTTAATCTAAAAAAAAAA]


>consensus_10122#2 GATGAGGCTTTTGAGGAGTGGAGATATCGGTCTTTGAGGGTCCATGCGCATCTCTGAAGC GGGAGAAGCNGGACGCAGAGACGGTCGACAAGGGTAACGACTGTGGATTGGTGATTCAGG ACTGTAACGATTTCCCGGTTGGGGACATCGTCCCGTGCTTGGACCCGGTTATCCGGAAGC CCCAGTTCATCTCAACNCCAAGCGGCGCGGTTCGGATAGAATGCTGATAGATGTTTAGTT GTNTTCTGCTTCCCTTCGTGATCNACTAACCCAGATTTTGGCCCGTGGAACCAGAGGGAG ATGATCCAGTTGGTGCGCTTATTATTTTCTCGCCCACCAACTTGTTGCTGCNACCCATTT CCANCCGAAACCTCTATTCATATATGAGATGAAGACCCTGGTTAATCTAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10122#0      CCGAACCCTCTGCATCCCCCTAAACCTTTCTCCGCTCCTCCCCGCCGTCGCCGCCGCCAG 60
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      CAACCCTAGCCCTCCTCCGCCGTCGCCGGTGATAACCTCTCCCATCGCCGTACGTCCCCA 120
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      GGATCCCTTCCCATCCTCCTCCCTTATCCCGTCTCTTTAGTCTCGCCGTGGGGGGCAGGG 180
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      TGGAAGAGCCGCCGCCGGCGGAGCGCCGAGAATGGCGTGGCGGATGCTGCGACGGAAGGA 240
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      TTTTCACACGGGCCTTGTGAATTTGGCCTCCCGTGTGGATCATGGGGGAGCGAAGAATTT 300
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      TTCCAGTGGGACGTTTGGAAAGCTGGCTGACTTCGTTCTTAGCGATACTCATACACCCAT 360
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      TGTAAAAGGTGCTGCTAATTGTACGGCTTATAAACACTGCACTATCAGGAATTTTCATGC 420
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      AGGTGTATACATGTTAGCATGGAGTAGGAAGCGTGAAGAAGTTGCAGGGTTAAAAGCACC 480
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      TAAAAAGGAGAAGCGAGTGAAAAGAGAAACTAGAACTCAACCTCCTGTAGAAGCGCCATA 540
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      TGTTGCACCAAAACAAAAGATAGCTATCAAATCATCACCAGATAAAACAGTTGACATTTT 600
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      TGATGGGATGACATTGCTTGATCTCTCCAAACGGACTGGTGCATCAATTGGTGCACTTCA 660
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      AGACATACTCACAGATCTTGGTGAAAAGGTTGAATCAGAGTTCGACGCTATCAGCATTGA 720
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      TCTTGCTGAGTTAGTTGCTATGGAACTTGGTGTTAATATCAGAAGAATGCACACTGGTGA 780
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      AGGCACACTTGAACCACGTCCTGCTGTGGTAACAATCATGGGCCATGTTGACCATGGTAA 840
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      AACGTCACTTCTAGATTCCCTGCGTCAAACATCTGTTGCGGCTAAGGAAGCTGGTGGGAT 900
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      TACTCAACATATAGGTGCCTTTGTTGTTGAGATGCCATCAGGAGCCTCTATCACATTTCT 960
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      TGATACACCAGGGCATGCTGCCTTTAGTGCAATGCGGGCTAGAGGTGCTGCTGTCACAGA 1020
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      TATTGTAGTGCTTGTAGTTGCAGCTGATGATGGGGTGATGCCTCAAACACTTGAAGCTAT 1080
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      GTCACATGCAAAAGCAGCCAATGTTCCCATTGTAGTTGCTGTAAACAAATGTGATAAATC 1140
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      TGGAGCCGATCCTGAGAGGGTCAGAATTCAGCTGGGTTCAGAAGGATTGCTTTTGGAGGA 1200
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      TATGGGTGGTGATGTACAGGTTGTAGAAATTTCTGCAGTAACAAAACTTGGTTTGGACAA 1260
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      ATTGGAAGAGGCTTTGCTCCTTCAGGCTGAGATAATGGACCTGAAAGCTAGAATTGATGG 1320
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      ACCTGCCCAAGCTTTTGTGGTGGAGGCAAGAGTAGACAGAGGCAGGGGGCCATTGGCAAC 1380
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      AGCTATAGTCAAGGCTGGCACATTAGTCAGCGGGCAGCACATTGTTGTGGGAGCAGAGTG 1440
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      GGGAAGAATTCGGTCTCTTAGAGATACTGCTGGGAAAATAACAGAGTCTGCAAAACCTGC 1500
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      AATGCCTGTTGAGATTGAGGGGTTAAGGGGCCTTCCAATGGCTGGGGATGATGTTGTGGT 1560
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      TGTTGACTCGGAAGAAAGGGCAAGAATGCTTAGTCAAGGACGGAAGAAAAAACAGGAAAA 1620
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      AGACAGGCTTCGAAAGATTGATGAAGACATGACAGAGGAGGCGGAAATTGGTGAAGAGAC 1680
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      TCCTGAAAGAGTTGAGATGCCCATCATTGTGAAAGCTGATGTACAAGGCAGTGTTCAAGC 1740
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      AGTTACAGATGCCTTAAGAAGCCTTAATAGTCCACAGGTGTTTGTGAATATTGTTCATGT 1800
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      TGGTGTTGGCCCAATAAGCCAACATGACATTGATCTGGCACAAGCATGCCGGGCATATAT 1860
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      AGTCGGTTTCAACATCCGTACTCCTCCAAGTGCTATCACTCTAGCAGCAACACAAGCCAA 1920
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      CATAAAGATTTTGCTGCACAAGGTGATCTATCATCTCCTTGAAGAAATGGGACGGGAGAT 1980
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      TGTCGAGAAGGCACCGGGCACCCCTGAGACCCAGGTTTCAGGGGAAGCCGAGGTTCTGAA 2040
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      ------------------------------------------------------------
                                                                                   

consensus_10122#0      CATATTCGAGCTGAAAGGGCGTAGCAAGTCAAAAGGGCCTGACATAAAGATTGCCGGCTG 2100
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      -----GGGCGCCGGGCCCCCCCTAAAGGTTAACGGTATCGATAAGCGTCATTAGAGGCGC 55
                                                                                   

consensus_10122#0      CCGAATAACTGACGGGCACTTAAGCAAAACCGGG-ACGATGAGGCTTTTGAGGAGTGGAG 2159
consensus_10122#2      -------------------------------------GATGAGGCTTTTGAGGAGTGGAG 23
consensus_10122#1      AGCCAAGGGGCGCGGGCAGTTAAGCAAATCCGGGGACGATGAGGCTTTTCGGGAGTGGAC 115
                                                            ************  ******** 

consensus_10122#0      ATGTCG-TCTTTGAGGGTCCATGCGCATCTCTGAAGCGGGAGAAGCAGGACGCAGAGACG 2218
consensus_10122#2      ATATCGGTCTTTGAGGGTCCATGCGCATCTCTGAAGCGGGAGAAGCNGGACGCAGAGACG 83
consensus_10122#1      AGGTTG-TCTTTCAGGGTCCCTGCGGATCTCTGAAGCGGGAGAAGCAGGCCGTAGAGACG 174
                       *  * * ***** ******* **** ******************** ** ** *******

consensus_10122#0      GTCGACAAGGGTAACGACTGTGGATTGGTGATTCAGGACTGTAACGATTTCCAGGTTGGG 2278
consensus_10122#2      GTCGACAAGGGTAACGACTGTGGATTGGTGATTCAGGACTGTAACGATTTCCCGGTTGGG 143
consensus_10122#1      GTCGACAAGGGTAACCACTGTGGATTGGTGATTCAGGACTGTAACGATTTCCAGGTTGGG 234
                       *************** ************************************ *******

consensus_10122#0      GACATCGTCCAGTGCTTGGAGCAGGTTATCAGGAAGCCCAAGTTCATCTCAACACAAAGC 2338
consensus_10122#2      GACATCGTCCCGTGCTTGGACCCGGTTATCCGGAAGCCCCAGTTCATCTCAACNCCAAGC 203
consensus_10122#1      GACATCGTCCAGTGCTTGGAGCAGGTTATCAGGAAGCCCAAGTTTATCTCAACACAAAGC 294
                       ********** ********* * ******* ******** **** ******** * ****

consensus_10122#0      GGCGCGGTTCGGATAGAATGCTGATAGATGTTTAGTTGTTTTCTGCTTCCATTCGTGATC 2398
consensus_10122#2      GGCGCGGTTCGGATAGAATGCTGATAGATGTTTAGTTGTNTTCTGCTTCCCTTCGTGATC 263
consensus_10122#1      GGCGCGGTTTGGATAGAATGCTGATAGATGTTTAGTTGTTTTTTGCTTCCATTCGTGATC 354
                       ********* ***************************** ** ******* *********

consensus_10122#0      AACTAACCAAGATTTTGGCA-GTGGAACAAGAGGGAGATGATCAAGTTGGTGCGCTTATT 2457
consensus_10122#2      NACTAACCCAGATTTTGGCCCGTGGAACCAGAGGGAGATGATCCAGTTGGTGCGCTTATT 323
consensus_10122#1      AACTAACCAAGATTTTGGCA-GTGGAACAAGAGGGAGATGGTCAAGTTGGTGCGCTTATT 413
                        ******* **********  ******* *********** ** ****************

consensus_10122#0      ATTTTCTCGCCAACAAACTTGTTGCTGCAACCAATTTCAAACAGAAACCTCTATTCATAT 2517
consensus_10122#2      ATTTTCTCGCCCACCAACTTGTTGCTGCNACCCATTTCCANCCGAAACCTCTATTCATAT 383
consensus_10122#1      ACTTTCTCGCCAACAAACTTGTTGCTGCAATCAATTTCAAACAGAAACCTCTATTTATAT 473
                       * ********* ** ************* * * ***** * * ************ ****

consensus_10122#0      ATGAGATGAAGACA-TGGTTAATCTTGTTCAGGTGCTTGTGTTTGTTGTACATTCCTGCA 2576
consensus_10122#2      ATGAGATGAAGACCCTGGTTAATCTAAAAAAAAAA------------------------- 418
consensus_10122#1      TTGAGATGAAGACA-TGGTTAATCTTGTTCAGGTGCTCGTGTTTGTTGTACATTCCTGCA 532
                        ************  **********     *                             

consensus_10122#0      GTTTCCACAAGTTCTGCGAATAACGTGGATTACTGGATTAGTGAAAAGGTTATTGTTATT 2636
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      GTTTCCACAAGTTTTGCGAATAACGTGGATTACTGGATTAGTGAAAAGGTTATTGTTATT 592
                                                                                   

consensus_10122#0      GACTTAATTATTATTACTGTATAATTGCAGCCACAGAAAGGCCATTTTTGCCGGTTCATG 2696
consensus_10122#2      ------------------------------------------------------------
consensus_10122#1      GACTTAATTATTATTACTGTATAATTGCAGCCACAGAAAGGCCATTTTTGCCGGTTAAAA 652
                                                                                   

consensus_10122#0      CGAGTCCAGGCT- 2708
consensus_10122#2      -------------
consensus_10122#1      AAAAAAAAAAAAA 665
                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)