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Oryza sativa
cluster # 10128 cluster # 10128       Sequences # 7       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10128#0 length = 2433 sequences # 4  
consensus_10128#1 length = 715 sequences # 1  
consensus_10128#2 length = 430 sequences # 1  
consensus_10128#3 length = 277 sequences # 1  

consensusID : consensus_10128#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 2433
fasta sequence
                              [TCCTCCTCCCTCGCCGTCCTCACAATTTGTCTCTTCCCCTAATTTCTCCCCCCAATTTCGTCCCTTCTCGGGTCTCGAATTTGTCGCCCTTCTTCCTCGCGATCTGTCGCGCTTCATCGCCATCGGCGACCTCGCGCGCGCGCCGCCGGCGCTGGGGGGGCGCCGGAAGCCTTTCTCTCGTCGAGAGGCGTCGCGGCCCCCTTCGCCCCCCCCCCCCCTCTCCCGACTCCTCCGCGGCGTGCTGGGCTAGCGCACGTGCAGCGTAGATCCATCCGGGTTTGGATTGATTTCTTATTTTTAAAAAAATCGGTAAGGAACCCTAGCTTTGCTTACCTCGATGGTTCATTTCGATCTAAATCTTTATTTATGCCCGTCGTTCAGTTAGTGGTGGAATTATTTGCTGCGCGTTGCGCTACTAGCCTAATAGACTTATCCGTGGCTGGTGATTCCATGATTAGGTACTTATTCTTCTTCAGAGCTCAAGATCAACATGAGTTGAACCAAATAATTTTGGTACTCTAGGTGCGGGCGCAGTTACCTTTTTTTTCCAGAAATCTATGTGGTTCAACTGAATTTTCCATGCCCTATGTTAAGTCTGCCGCTGCTCCTCTGGATAGGAAAAGTTTCCAATTAGGTTGTACCTGACCAGGTTGGGTAATTTTTCGGCGGCCAATATGGAGCACCTTCCTGTTGAAGTCATTGGCAACATTCTTGCACATCTTAGCGCTGCACGTGATGTCATGGTTGCCTCTGGGGTGTGCCGGAAGTGGCGGACGGCATGCAGGAAGCACCTCCATTCATTATCGTTCAATTCCGATGACTTCCCTCGGGACATGACTACACGCCAGCTGGAGATTGTCATCACACAGACTATATTTCAGACAATGGGGCTGCAGTGCCTCTCTATTCACATAGATCGTACCCATGAGTTCTCGGCAGCACCTGTGATTGCATGGCTCATGTATACCAGGGAAACACTCCGGAGCTTGTCTTACAATGTTCGGACAAACCCTAACGTGAACATCCTGGAGAAATGTGGGAGGCAGAAATTGGAGGTGTTGGATTTAGACCATAACACAATCACTGGTGTTGAACCAAGTTATCAGAGATTCACCTGTCTGAAATCCCTTTCTTTAAGGCATGTGAGCATTTCAGCCTTGGATTTGAGCCTTTTAGTGGCTGCTTGCCCAAAGATAGAGTCACTGGCACTTGATTTCCTTGAGGTTGTCACTTCAGATCCACAGTCTACAATGGAGCTGACTAGCCATACCTTGAAGAGCCTATTTGCAAAATCTGTTGGTGTGGACAAGATCATACTTGATACAGATAATCTGGAAGTTCTAAACCTAAATGCTTTGAACCTTGATTTGTTTGAGCTCATTGGGAAGGGTACTCTAAAGCATCTCAAGATTGACGATGTTAGTGTTACTCATATGGATATTGGGGAGAGCACAGATCATCTGGAGGTAGTGGATGTGAGTAACTTTACTATAGTCCGGCCAAAGCTGTACAGTATGATATCCAGAGCATCTAACTTGCGGATGCTACGATTTTGGGGTGTTGTGTTTGATGATGAGGATGAGATTGTGGACTCAGAAACCATTGCTGTTTCATTTCCTCTTCTAAGGCATCTTTCATTGAGTTATGAGTTACGAGATGGGCTACTTCATTATAGCCTGCAAGGATCGTCACCACTGGATAATGTTTCAGTCTTGGAACTTGGTTGGACAGTTATAAGTGAGCATTTTGGACCCTGGGTTTTTGGAATGATCGAGAGGTGCCCAAATCTCAAGAAACTTGTCATTCATGGTGTTCTTTCTGAGGCAAAAACACGCGAAGAGCGCCAGATGCTAGCAAGCTTTACTTCATTTATAGTCTGCCTCATGAGGAAGTATGTGCATGTTGATGTACAATTTGAGTACGAGTGATCATTGTCCAAGTTGGGTGGGCATTCTTGCCCTAGCTCATTCGAGACATACCATCAGATTTGCTTCTCATCCAACTTCACGAAGGCCTGTGGTTTGTTACTGTCAGCTGCATGTACTTGATCAAGAAAGTTTGAGTTGACATGTCCACAGAATAAAAAGCGCATGCATTTGCCAATACATTATAGCACAAGTCGCGCACCCTTCTCTGGAAACCATCGTCCTCTCTGTTAGTGAAACACCTCCAACTGAAATGGAATGCTTAAGGTGACATTTATTTGGCACATGCCCATGAATATAATGCCCTCATCTTTTGGTCTGTTCATGAGAGAAATTTTGGGTGGGAATTCTCTTTACATACTGTAAGTGTGAATGGAAGATTTATAAATTGTAAGTTGACTTCATGCCCACAGAAAACGTGAATTCTCTTAGGAAAATGGTTATTCCCCTGAAACTTTACGCCTTGAAATTCCTCGCGCCGAGTGATTCTATTATATTGATATTTGCT]

[+] EMBL AK072151             [TCCTCCTCCCTCGCCGTCCTCACAATTTGTCTCTTCCCCTAATTTCTCCCCCCAATTTCGTCCCTTCTCGGGTCTCGAATTTGTCGCCCTTCTTCCTCGCGATCTGTCGCGCTTCATCGCCATCGGCGACCTCGCGCGCGCGCCGCCGGCGCTGGGGGGGCGCCGGAAGCCTTTCTCTCGTCGAGAGGCGTCGCGGCCCCCTTCGCCCCCCCCCCCCCTCTCCCGACTCCTCCGCGGCGTGCTGGGCTAGCGCACGTGCAGCGTAGATCCATCCGGGTTTGGATTGATTTCTTATTTTTAAAAAAATCGGTAAGGAACCCTAGCTTTGCTTACCTCGATGGTTCATTTCGATCTAAATCTTTATTTATGCCCGTCGTTCAGTTAGTGGTGGAATTATTTGCTGCGCGTTGCGCTACTAGCCTAATAGACTTATCCGTGGCTGGTGATTCCATGATTAGGTACTTATTCTTCTTCAGAGCTCAAGATCAACATGAGTTGAACCAAATAATTTTGGTACTCTAGGTGCGGGCGCAGTTACCTTTTTTTTCCAGAAATCTATGTGGTTCAACTGAATTTTCCATGCCCTATGTTAAGTCTGCCGCTGCTCCTCTGGATAGGAAAAGTTTCCAATTAGGTTGTACCTGACCAGGTTGGGTAATTTTTCGGCGGCCAATATGGAGCACCTTCCTGTTGAAGTCATTGGCAACATTCTTGCACATCTTAGCGCTGCACGTGATGTCATGGTTGCCTCTGGGGTGTGCCGGAAGTGGCGGACGGCATGCAGGAAGCACCTCCATTCATTATCGTTCAATTCCGATGACTTCCCTCGGGACATGACTACACGCCAGCTGGAGATTGTCATCACACAGACTATATTTCAGACAATGGGGCTGCAGTGCCTCTCTATTCACATAGATCGTACCCATGAGTTCTCGGCAGCACCTGTGATTGCATGGCTCATGTATACCAGGGAAACACTCCGGAGCTTGTCTTACAATGTTCGGACAAACCCTAACGTGAACATCCTGGAGAAATGTGGGAGGCAGAAATTGGAGGTGTTGGATTTAGACCATAACACAATCACTGGTGTTGAACCAAGTTATCAGAGATTCACCTGTCTGAAATCCCTTTCTTTAAGGCATGTGAGCATTTCAGCCTTGGATTTGAGCCTTTTAGTGGCTGCTTGCCCAAAGATAGAGTCACTGGCACTTGATTTCCTTGAGGTTGTCACTTCAGATCCACAGTCTACAATGGAGCTGACTAGCCATACCTTGAAGAGCCTATTTGCAAAATCTGTTGGTGTGGACAAGATCATACTTGATACAGATAATCTGGAAGTTCTAAACCTAAATGCTTTGAACCTTGATTTGTTTGAGCTCATTGGGAAGGGTACTCTAAAGCATCTCAAGATTGACGATGTTAGTGTTACTCATATGGATATTGGGGAGAGCACAGATCATCTGGAGGTAGTGGATGTGAGTAACTTTACTATAGTCCGGCCAAAGCTGTACAGTATGATATCCAGAGCATCTAACTTGCGGATGCTACGATTTTGGGGTGTTGTGTTTGATGATGAGGATGAGATTGTGGACTCAGAAACCATTGCTGTTTCATTTCCTCTTCTAAGGCATCTTTCATTGAGTTATGAGTTACGAGATGGGCTACTTCATTATAGCCTGCAAGGATCGTCACCACTGGATAATGTTTCAGTCTTGGAACTTGGTTGGACAGTTATAAGTGAGCATTTTGGACCCTGGGTTTTTGGAATGATCGAGAGGTGCCCAAATCTCAAGAAACTTGTCATTCATGGTGTTCTTTCTGAGGCAAAAACACGCGAAGAGCGCCAGATGCTAGCAAGCTTTACTTCATTTATAGTCTGCCTCATGAGGAAGTATGTGCATGTTGATGTACAATTTGAGTACGAGTGATCATTGTCCAAGTTGGGTGGGCATTCTTGCCCTAGCTCATTCGAGACATACCATCAGATTTGCTTCTCATCCAACTTCACGAAGGCCTGTGGTTTGTTACTGTCAGCTGCATGTACTTGATCAAGAAAGTTTGAGTTGACATGTCCACAGAATAAAAAGCGCATGCATTTGCCAATACATTATAGCACAAGTCGCGCACCCTTCTCTGGAAACCATCGTCCTCTCTGTTAGTGAAACACCTCCAACTGAAATGGAATGCTTAAGGTGACATTTATTTGGCACATGCCCATGAATATAATGCCCTCATCTTTTGGTCTGTTCATGAGAGAAATTTTGGGTGGGAATTCTCTTTACATACTGTAAGTGTGAATGGAAGATTTATAAATTGTAAGTTGACTTCATGCCCACAGAAAACGTGAATTCTCTTAGGAAAATGGTTATTCCCCTGAAACTTTACGCCTTGAAATTCCTCGCGCCGAGTGATTCTATTATATTGATATTTGCT]
[+] EMBL AY224563             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CATAACACAATCACTGGTGTTGAACCAAGTTATCAGAGATTCACCTGTCTGAAATCCCTTTCTTTAAGGCATGTGAGCATTTCAGCCTTGGATTTGAGCCTTTTAGTGGCTGCTTGCCCAAAGATAGAGTCACTGGCACTTGATTTCCTTGAGGTTGTCACTTCAGATCCACAGTCTACAATGGAGCTGACTAGCCATACCTTGAAGAGCCTATTTGCAAAATCTGTTGGTGTGGACAAGATCATACTTGATACAGATAATCTGGAAGTTCTAAACCTAAATGCTTTGAACCTTGATTTGTTTGAGCTCATTGGGAAGGGTACTCTAAAGCATCTCAAGATTGACGATGTTAGTGTTACTCATATGGATATTGGGGAGAGCACAGATCATCTGGAGGTAGTGGATGTGAGTAACTTTACTATAGTCCGGCCAAAGCTGTACAGTATGATATCCAGAGCATCTAACTTGCGGATGCTACGATTTTGGGGTGTTGTGTTTGATGATGAGGATGAGATTGTGGACTCAGAAACCATTGCTGTTTCATTTCCTCTTCTAAGGCATCTTTCATTGAGTTATGAGTTACGAGATGGGCTACTTCATTATAGCCTGCAAGGATCGTCACCACTGGATAATGTTTCAGTCTTGGAACTTGGTTGGACAGTTATAAGTGAGCATTTTGGACCCTGGGTTTTTGGAATGATCGAGAGGTGCCCAAATCTCAAGAAACTTGTCATTCATGGTGTTCTTTCTGAGGCAAAAACACGCGAAGAGCGCCAGATGCTAGCAAGCTTTACTTCATTTATAGTCTGCCTCATGAGGAAGTATGTGCATGTTGATGTACAATTTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CB628228             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTTGTGTTTGATGATGAGGATGAGATTGTGGACTCAGAAACCATTGCTGTTTCATTTCCTCTTCTAAGGCATCTTTCATTGAGTTATGAGTTACGAGATGGGCTACTTCATTATAGCCTGCAAGGATCGTCACCACTGGATAATGTTTCAGTCTTGGAACTTGGTTGGACAGTTATAAGTGAGCATTTTGGACCCTGGGTTTTTGGAATGATCGAGAGGTGCCCAAATCTCAAGAAACTTGTCATTCATGGTGTTCTTTCTGAGGCAAAAACACGCGAAGAGCGCCAGATGCTAGCAAGCTTTACTTCATTTATAGTCTGCCTCATGAGGAAGTATGTGCATGTCGATGTACAATTTGAGTACGAGTGACCATTGTCCAAGTTGGGTGGGCATTCTTGCCCTAGCTCATTCGAGACATACCATCAGATTTGCTTCTCATCCAACTTCACGAAGGCCTGTGGTTTGTTACTGTCAGCTGCATGTACTTGATCAAGAAAGTTTGAGTTGACATGTCCACAGAATAAAAAGCGCATGCATTTGCCAATACATTATAGCACAAGTCGCGCACCCTTCTCTGGAAACCATCGTCCTCTCTGTTAGTGAAACACCTCCAACTGAAATGGAATGCTTAAGGTGACATTTATTTGGCACATGCCCATGAATATAATGCCCTCATCTTTTGGTCTGTTCATGAGAGAAATTTTGGGTGGGAATTCTCTTTACATACTGTAAGTGTGAATGGAAGATTTATAAATTGTAAGTTGACTTCATGCCCACAGAAAACGTGAATTCTCTTAGGAAAATGGTTATTCCCCTGAAACTTTACGCCTTGGAATTCCTCGCGCCGAGTGATTCTATTATATTGA        ]
[-] EMBL CB674624             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGCTGTTTCATTTCCTCTTCTAAGGCATCTTTCATTGAGTTATGAGTTACGAGATGGGCTACTTCATTATAGCCTGCAAGGATCGTCACCACTGGATAATGTTTCAGTCTTGGAACTTGGTTGGACAGTTATAAGTGAGCATTTTGGACCCTGGGTTTTTGGAATGATCGAGAGGTGCCCAAATCTCAAGAAACTTGTCATTCATGGTGTTCTTTCTGAGGCAAAAACACGCGAAGAGCGCCAGATGCTAGCAAGCTTTACTTCATTTATAGTCTGCCTCATGAGGAAGTATGTGCATGTTGATGTACAATTTGAGTACGAGTGATCATTGTCCAAGTTGGGTGGGCATTCTTGCCCTAGCTCATTCGAGACATACCATCAGATTTGCTTCTCATCCAACTTCACGAAGGCCTGTGGTTTGTTACTGTCAGCTGCATGTACTTGATCAAGAAAGTTTGAGTTGACATGTCCACAGAATAAAAAGCGCATGCATTTGCCAATACATTATAGCACAAGTCGCGCACCCTTCTCTGGAAACCATCGTCCTCTCTGTTAGTGAAACACCTCCAACTGAAATGGAATGCTTAAGGTGACATTTATTTGGCACATGCCCATGAATATAATGCCCTCATCTTTTGGTCTGTTCATGAGAGAAATTTTGGGTGGGAATTCTCTTTACATACTGTAAGTGTGAATGGAAGATTTATAAATTGTAAGTTGACTTCATGCCCACAGAAAACGTGAATTCTCTTAGGAAAATGGTT                                                                  ]


>consensus_10128#0 TCCTCCTCCCTCGCCGTCCTCACAATTTGTCTCTTCCCCTAATTTCTCCCCCCAATTTCG TCCCTTCTCGGGTCTCGAATTTGTCGCCCTTCTTCCTCGCGATCTGTCGCGCTTCATCGC CATCGGCGACCTCGCGCGCGCGCCGCCGGCGCTGGGGGGGCGCCGGAAGCCTTTCTCTCG TCGAGAGGCGTCGCGGCCCCCTTCGCCCCCCCCCCCCCTCTCCCGACTCCTCCGCGGCGT GCTGGGCTAGCGCACGTGCAGCGTAGATCCATCCGGGTTTGGATTGATTTCTTATTTTTA AAAAAATCGGTAAGGAACCCTAGCTTTGCTTACCTCGATGGTTCATTTCGATCTAAATCT TTATTTATGCCCGTCGTTCAGTTAGTGGTGGAATTATTTGCTGCGCGTTGCGCTACTAGC CTAATAGACTTATCCGTGGCTGGTGATTCCATGATTAGGTACTTATTCTTCTTCAGAGCT CAAGATCAACATGAGTTGAACCAAATAATTTTGGTACTCTAGGTGCGGGCGCAGTTACCT TTTTTTTCCAGAAATCTATGTGGTTCAACTGAATTTTCCATGCCCTATGTTAAGTCTGCC GCTGCTCCTCTGGATAGGAAAAGTTTCCAATTAGGTTGTACCTGACCAGGTTGGGTAATT TTTCGGCGGCCAATATGGAGCACCTTCCTGTTGAAGTCATTGGCAACATTCTTGCACATC TTAGCGCTGCACGTGATGTCATGGTTGCCTCTGGGGTGTGCCGGAAGTGGCGGACGGCAT GCAGGAAGCACCTCCATTCATTATCGTTCAATTCCGATGACTTCCCTCGGGACATGACTA CACGCCAGCTGGAGATTGTCATCACACAGACTATATTTCAGACAATGGGGCTGCAGTGCC TCTCTATTCACATAGATCGTACCCATGAGTTCTCGGCAGCACCTGTGATTGCATGGCTCA TGTATACCAGGGAAACACTCCGGAGCTTGTCTTACAATGTTCGGACAAACCCTAACGTGA ACATCCTGGAGAAATGTGGGAGGCAGAAATTGGAGGTGTTGGATTTAGACCATAACACAA TCACTGGTGTTGAACCAAGTTATCAGAGATTCACCTGTCTGAAATCCCTTTCTTTAAGGC ATGTGAGCATTTCAGCCTTGGATTTGAGCCTTTTAGTGGCTGCTTGCCCAAAGATAGAGT CACTGGCACTTGATTTCCTTGAGGTTGTCACTTCAGATCCACAGTCTACAATGGAGCTGA CTAGCCATACCTTGAAGAGCCTATTTGCAAAATCTGTTGGTGTGGACAAGATCATACTTG ATACAGATAATCTGGAAGTTCTAAACCTAAATGCTTTGAACCTTGATTTGTTTGAGCTCA TTGGGAAGGGTACTCTAAAGCATCTCAAGATTGACGATGTTAGTGTTACTCATATGGATA TTGGGGAGAGCACAGATCATCTGGAGGTAGTGGATGTGAGTAACTTTACTATAGTCCGGC CAAAGCTGTACAGTATGATATCCAGAGCATCTAACTTGCGGATGCTACGATTTTGGGGTG TTGTGTTTGATGATGAGGATGAGATTGTGGACTCAGAAACCATTGCTGTTTCATTTCCTC TTCTAAGGCATCTTTCATTGAGTTATGAGTTACGAGATGGGCTACTTCATTATAGCCTGC AAGGATCGTCACCACTGGATAATGTTTCAGTCTTGGAACTTGGTTGGACAGTTATAAGTG AGCATTTTGGACCCTGGGTTTTTGGAATGATCGAGAGGTGCCCAAATCTCAAGAAACTTG TCATTCATGGTGTTCTTTCTGAGGCAAAAACACGCGAAGAGCGCCAGATGCTAGCAAGCT TTACTTCATTTATAGTCTGCCTCATGAGGAAGTATGTGCATGTTGATGTACAATTTGAGT ACGAGTGATCATTGTCCAAGTTGGGTGGGCATTCTTGCCCTAGCTCATTCGAGACATACC ATCAGATTTGCTTCTCATCCAACTTCACGAAGGCCTGTGGTTTGTTACTGTCAGCTGCAT GTACTTGATCAAGAAAGTTTGAGTTGACATGTCCACAGAATAAAAAGCGCATGCATTTGC CAATACATTATAGCACAAGTCGCGCACCCTTCTCTGGAAACCATCGTCCTCTCTGTTAGT GAAACACCTCCAACTGAAATGGAATGCTTAAGGTGACATTTATTTGGCACATGCCCATGA ATATAATGCCCTCATCTTTTGGTCTGTTCATGAGAGAAATTTTGGGTGGGAATTCTCTTT ACATACTGTAAGTGTGAATGGAAGATTTATAAATTGTAAGTTGACTTCATGCCCACAGAA AACGTGAATTCTCTTAGGAAAATGGTTATTCCCCTGAAACTTTACGCCTTGAAATTCCTC GCGCCGAGTGATTCTATTATATTGATATTTGCT



consensusID : consensus_10128#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 715
fasta sequence
                              [TCATTGAGTTATGAGTTACGAGATGGGCTACTTCATTATAGCCTGCAAGGATCGTCACCACTGGATAATGTTTCAGTCTTGGAACTTGGTTGGACAGTTATAAGTGAGCATTTTGGACCCTGGGTTTTTGGAATGATCGAGAGGTGCCCAAATCTCAAGAAACTTGTCATTCATGGTGTTCTTTCTGAGGCAAAAACACGCGAAGAGCGCCAGATGCTAGCAAGCTTTACTTCATTTATAGTCTGCCTCATGAGGAAGTATGTGCATGTTGATGTACAATTTGAGTACGAGTGATCATTGTCCAAGTTGGGTGGGCATTCTTGCCCTAGCTCATTCGAGACATACCATCAGATTTGCTTCTCATCCAACTTCACGAAGGCCTGTGGTTTGTTACTGTCAGCTGCATGTACTTGATCAAGAAAGTTTGAGTTGACATGTCCACAGAATAAAAAGCGCATGCATTTGCCAATACATTATAGCACAAGTCGCGCACCCTTCTCTGGAAACCATCGTCCTCTCTGTTAGTGAAACACCTCCAACTGAAATGGAATGCTTAAGGTGACATTTATTTGGCACATGCCCATNAATACCCCCCAGCGCCGGCGGCGCGCGCGCGAGGTCGCCGATGGCGATGAAGCGCGACAGATCGCGAGGAAGAAGGGCGACAAATTCGAGACCCGAGAAGGGACGAAATTGGGGGGAGAAATTAGGGGAA]

[-] EMBL CB674623             [TCATTGAGTTATGAGTTACGAGATGGGCTACTTCATTATAGCCTGCAAGGATCGTCACCACTGGATAATGTTTCAGTCTTGGAACTTGGTTGGACAGTTATAAGTGAGCATTTTGGACCCTGGGTTTTTGGAATGATCGAGAGGTGCCCAAATCTCAAGAAACTTGTCATTCATGGTGTTCTTTCTGAGGCAAAAACACGCGAAGAGCGCCAGATGCTAGCAAGCTTTACTTCATTTATAGTCTGCCTCATGAGGAAGTATGTGCATGTTGATGTACAATTTGAGTACGAGTGATCATTGTCCAAGTTGGGTGGGCATTCTTGCCCTAGCTCATTCGAGACATACCATCAGATTTGCTTCTCATCCAACTTCACGAAGGCCTGTGGTTTGTTACTGTCAGCTGCATGTACTTGATCAAGAAAGTTTGAGTTGACATGTCCACAGAATAAAAAGCGCATGCATTTGCCAATACATTATAGCACAAGTCGCGCACCCTTCTCTGGAAACCATCGTCCTCTCTGTTAGTGAAACACCTCCAACTGAAATGGAATGCTTAAGGTGACATTTATTTGGCACATGCCCATNAATACCCCCCAGCGCCGGCGGCGCGCGCGCGAGGTCGCCGATGGCGATGAAGCGCGACAGATCGCGAGGAAGAAGGGCGACAAATTCGAGACCCGAGAAGGGACGAAATTGGGGGGAGAAATTAGGGGAA]


>consensus_10128#1 TCATTGAGTTATGAGTTACGAGATGGGCTACTTCATTATAGCCTGCAAGGATCGTCACCA CTGGATAATGTTTCAGTCTTGGAACTTGGTTGGACAGTTATAAGTGAGCATTTTGGACCC TGGGTTTTTGGAATGATCGAGAGGTGCCCAAATCTCAAGAAACTTGTCATTCATGGTGTT CTTTCTGAGGCAAAAACACGCGAAGAGCGCCAGATGCTAGCAAGCTTTACTTCATTTATA GTCTGCCTCATGAGGAAGTATGTGCATGTTGATGTACAATTTGAGTACGAGTGATCATTG TCCAAGTTGGGTGGGCATTCTTGCCCTAGCTCATTCGAGACATACCATCAGATTTGCTTC TCATCCAACTTCACGAAGGCCTGTGGTTTGTTACTGTCAGCTGCATGTACTTGATCAAGA AAGTTTGAGTTGACATGTCCACAGAATAAAAAGCGCATGCATTTGCCAATACATTATAGC ACAAGTCGCGCACCCTTCTCTGGAAACCATCGTCCTCTCTGTTAGTGAAACACCTCCAAC TGAAATGGAATGCTTAAGGTGACATTTATTTGGCACATGCCCATNAATACCCCCCAGCGC CGGCGGCGCGCGCGCGAGGTCGCCGATGGCGATGAAGCGCGACAGATCGCGAGGAAGAAG GGCGACAAATTCGAGACCCGAGAAGGGACGAAATTGGGGGGAGAAATTAGGGGAA



consensusID : consensus_10128#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 430
fasta sequence
                              [TTGTCTCTTCCCCTAATTTCTCCCCCCAATTTCGTCCCTTCTCGGGTCTCGAATTTGTCGCCCTTCTTCCTCGCGATCTGTCGCGCTTCATCGCCATCGGCGACCTCGCGCGCGCGCCGCCGGCGCTGGGGGGGCGCCGGAAGCCTTTCTCTCGTCGAGAGGCGACGCAGCCCCCTTCGCCCCCCCCCCTCTCCCGACTCCTCCGCGGCGAGATGGGCTAACGCACGTGCAGCGGAGATCCATCCGGGGTGGGATAGAGTTCTTATATATAAAAAAATCGGTACTTATTCTTCTTCAGAGGTCAAGATCTACATGAGTTGAACCAAGTAATTTTGGAACTCTAGGTGCGGGCGCAGTTACACTTTTTTTTCACAAAAATAATATGTGGGTCAACTGAATATTCCATGCCGAATGTAAAGTCTGCCGACTG]

[+] EMBL CB628227             [TTGTCTCTTCCCCTAATTTCTCCCCCCAATTTCGTCCCTTCTCGGGTCTCGAATTTGTCGCCCTTCTTCCTCGCGATCTGTCGCGCTTCATCGCCATCGGCGACCTCGCGCGCGCGCCGCCGGCGCTGGGGGGGCGCCGGAAGCCTTTCTCTCGTCGAGAGGCGACGCAGCCCCCTTCGCCCCCCCCCCTCTCCCGACTCCTCCGCGGCGAGATGGGCTAACGCACGTGCAGCGGAGATCCATCCGGGGTGGGATAGAGTTCTTATATATAAAAAAATCGGTACTTATTCTTCTTCAGAGGTCAAGATCTACATGAGTTGAACCAAGTAATTTTGGAACTCTAGGTGCGGGCGCAGTTACACTTTTTTTTCACAAAAATAATATGTGGGTCAACTGAATATTCCATGCCGAATGTAAAGTCTGCCGACTG]


>consensus_10128#2 TTGTCTCTTCCCCTAATTTCTCCCCCCAATTTCGTCCCTTCTCGGGTCTCGAATTTGTCG CCCTTCTTCCTCGCGATCTGTCGCGCTTCATCGCCATCGGCGACCTCGCGCGCGCGCCGC CGGCGCTGGGGGGGCGCCGGAAGCCTTTCTCTCGTCGAGAGGCGACGCAGCCCCCTTCGC CCCCCCCCCTCTCCCGACTCCTCCGCGGCGAGATGGGCTAACGCACGTGCAGCGGAGATC CATCCGGGGTGGGATAGAGTTCTTATATATAAAAAAATCGGTACTTATTCTTCTTCAGAG GTCAAGATCTACATGAGTTGAACCAAGTAATTTTGGAACTCTAGGTGCGGGCGCAGTTAC ACTTTTTTTTCACAAAAATAATATGTGGGTCAACTGAATATTCCATGCCGAATGTAAAGT CTGCCGACTG



consensusID : consensus_10128#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 277
fasta sequence
                              [ATCGTCCTCTCTGTTAGTGAAACACCTCCAACTGAAATGGAATGCTTAAGGTGACATTTATTTGGCACATGCCCATGAATATAATGCCCTCATCTTTTGGTCTGTTCATGAGAGAAATTTTGGGTGGGAATTCTCTTTACATACTGTAAGTGTGAATGGAAGATTTATAAATTGTAAGTTGACTTCATGCCCACAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTCGAAA]

[+] EMBL CA758252             [ATCGTCCTCTCTGTTAGTGAAACACCTCCAACTGAAATGGAATGCTTAAGGTGACATTTATTTGGCACATGCCCATGAATATAATGCCCTCATCTTTTGGTCTGTTCATGAGAGAAATTTTGGGTGGGAATTCTCTTTACATACTGTAAGTGTGAATGGAAGATTTATAAATTGTAAGTTGACTTCATGCCCACAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTCGAAA]


>consensus_10128#3 ATCGTCCTCTCTGTTAGTGAAACACCTCCAACTGAAATGGAATGCTTAAGGTGACATTTA TTTGGCACATGCCCATGAATATAATGCCCTCATCTTTTGGTCTGTTCATGAGAGAAATTT TGGGTGGGAATTCTCTTTACATACTGTAAGTGTGAATGGAAGATTTATAAATTGTAAGTT GACTTCATGCCCACAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTCGAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10128#1      ------------------------------------------------------------
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      TCCTCCTCCCTCGCCGTCCTCACAATTTGTCTCTTCCCCTAATTTCTCCCCCCAATTTCG 60
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      ------------------------------------------------------------
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      TCCCTTCTCGGGTCTCGAATTTGTCGCCCTTCTTCCTCGCGATCTGTCGCGCTTCATCGC 120
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      ------------------------------------------------------------
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      CATCGGCGACCTCGCGCGCGCGCCGCCGGCGCTGGGGGGGCGCCGGAAGCCTTTCTCTCG 180
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      ------------------------------------------------------------
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      TCGAGAGGCGTCGCGGCCCCCTTCGCCCCCCCCCCCCCTCTCCCGACTCCTCCGCGGCGT 240
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      ------------------------------------------------------------
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      GCTGGGCTAGCGCACGTGCAGCGTAGATCCATCCGGGTTTGGATTGATTTCTTATTTTTA 300
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      ------------------------------------------------------------
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      AAAAAATCGGTAAGGAACCCTAGCTTTGCTTACCTCGATGGTTCATTTCGATCTAAATCT 360
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      ------------------------------------------------------------
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      TTATTTATGCCCGTCGTTCAGTTAGTGGTGGAATTATTTGCTGCGCGTTGCGCTACTAGC 420
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      ------------------------------------------------------------
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      CTAATAGACTTATCCGTGGCTGGTGATTCCATGATTAGGTACTTATTCTTCTTCAGAGCT 480
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      ------------------------------------------------------------
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      CAAGATCAACATGAGTTGAACCAAATAATTTTGGTACTCTAGGTGCGGGCGCAGTTACCT 540
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      ------------------------------------------------------------
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      TTTTTTTCCAGAAATCTATGTGGTTCAACTGAATTTTCCATGCCCTATGTTAAGTCTGCC 600
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      ------------------------------------------------------------
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      GCTGCTCCTCTGGATAGGAAAAGTTTCCAATTAGGTTGTACCTGACCAGGTTGGGTAATT 660
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      ------------------------------------------------------------
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      TTTCGGCGGCCAATATGGAGCACCTTCCTGTTGAAGTCATTGGCAACATTCTTGCACATC 720
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      ------------------------------------------------------------
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      TTAGCGCTGCACGTGATGTCATGGTTGCCTCTGGGGTGTGCCGGAAGTGGCGGACGGCAT 780
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      ------------------------------------------------------------
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      GCAGGAAGCACCTCCATTCATTATCGTTCAATTCCGATGACTTCCCTCGGGACATGACTA 840
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      ------------------------------------------------------------
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      CACGCCAGCTGGAGATTGTCATCACACAGACTATATTTCAGACAATGGGGCTGCAGTGCC 900
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      ------------------------------------------------------------
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      TCTCTATTCACATAGATCGTACCCATGAGTTCTCGGCAGCACCTGTGATTGCATGGCTCA 960
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      ------------------------------------------------------------
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      TGTATACCAGGGAAACACTCCGGAGCTTGTCTTACAATGTTCGGACAAACCCTAACGTGA 1020
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      ------------------------------------------------------------
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      ACATCCTGGAGAAATGTGGGAGGCAGAAATTGGAGGTGTTGGATTTAGACCATAACACAA 1080
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      ------------------------------------------------------------
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      TCACTGGTGTTGAACCAAGTTATCAGAGATTCACCTGTCTGAAATCCCTTTCTTTAAGGC 1140
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      ------------------------------------------------------------
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      ATGTGAGCATTTCAGCCTTGGATTTGAGCCTTTTAGTGGCTGCTTGCCCAAAGATAGAGT 1200
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      ------------------------------------------------------------
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      CACTGGCACTTGATTTCCTTGAGGTTGTCACTTCAGATCCACAGTCTACAATGGAGCTGA 1260
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      ------------------------------------------------------------
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      CTAGCCATACCTTGAAGAGCCTATTTGCAAAATCTGTTGGTGTGGACAAGATCATACTTG 1320
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      ------------------------------------------------------------
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      ATACAGATAATCTGGAAGTTCTAAACCTAAATGCTTTGAACCTTGATTTGTTTGAGCTCA 1380
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      ------------------------------------------------------------
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      TTGGGAAGGGTACTCTAAAGCATCTCAAGATTGACGATGTTAGTGTTACTCATATGGATA 1440
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      ------------------------------------------------------------
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      TTGGGGAGAGCACAGATCATCTGGAGGTAGTGGATGTGAGTAACTTTACTATAGTCCGGC 1500
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      ------------------------------------------------------------
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      CAAAGCTGTACAGTATGATATCCAGAGCATCTAACTTGCGGATGCTACGATTTTGGGGTG 1560
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      ------------------------------------------------------------
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      TTGTGTTTGATGATGAGGATGAGATTGTGGACTCAGAAACCATTGCTGTTTCATTTCCTC 1620
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      --------------TCATTGAGTTATGAGTTACGAGATGGGCTACTTCATTATAGCCTGC 46
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      TTCTAAGGCATCTTTCATTGAGTTATGAGTTACGAGATGGGCTACTTCATTATAGCCTGC 1680
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      AAGGATCGTCACCACTGGATAATGTTTCAGTCTTGGAACTTGGTTGGACAGTTATAAGTG 106
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      AAGGATCGTCACCACTGGATAATGTTTCAGTCTTGGAACTTGGTTGGACAGTTATAAGTG 1740
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      AGCATTTTGGACCCTGGGTTTTTGGAATGATCGAGAGGTGCCCAAATCTCAAGAAACTTG 166
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      AGCATTTTGGACCCTGGGTTTTTGGAATGATCGAGAGGTGCCCAAATCTCAAGAAACTTG 1800
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      TCATTCATGGTGTTCTTTCTGAGGCAAAAACACGCGAAGAGCGCCAGATGCTAGCAAGCT 226
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      TCATTCATGGTGTTCTTTCTGAGGCAAAAACACGCGAAGAGCGCCAGATGCTAGCAAGCT 1860
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      TTACTTCATTTATAGTCTGCCTCATGAGGAAGTATGTGCATGTTGATGTACAATTTGAGT 286
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      TTACTTCATTTATAGTCTGCCTCATGAGGAAGTATGTGCATGTTGATGTACAATTTGAGT 1920
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      ACGAGTGATCATTGTCCAAGTTGGGTGGGCATTCTTGCCCTAGCTCATTCGAGACATACC 346
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      ACGAGTGATCATTGTCCAAGTTGGGTGGGCATTCTTGCCCTAGCTCATTCGAGACATACC 1980
consensus_10128#2      ------------------------------------------------------------
                                                                                   

consensus_10128#1      ATCAGATTTGCTTCTCATCCAACTTCACGAAGGCCTGTGGTTTGTTACTGTCAGCTGCAT 406
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      ATCAGATTTGCTTCTCATCCAACTTCACGAAGGCCTGTGGTTTGTTACTGTCAGCTGCAT 2040
consensus_10128#2      -TTGTCTCTTCCCCTAATTTCTCCCCCCAATTTCGTCCCTTCTCGGGTCTCGAATTTGTC 59
                                                                                   

consensus_10128#1      GTACTTGATCAAGAAAGTTTGAGTTGACATGTCCACAGAATAAAAAGCGCATGCATTTGC 466
consensus_10128#3      ------------------------------------------------------------
consensus_10128#0      GTACTTGATCAAGAAAGTTTGAGTTGACATGTCCACAGAATAAAAAGCGCATGCATTTGC 2100
consensus_10128#2      GCCCTTCTTCCTCGCGATCTGTCGCGCTTCATCGCCAT--CGGCGACCTCGCGCGCGCGC 117
                                                                                   

consensus_10128#1      CAATACATTATAGCACAAGTCGCGCACCCTTCTCTGGAAACCATCGTCCTCTCTGTTAGT 526
consensus_10128#3      ------------------------------------------ATCGTCCTCTCTGTTAGT 18
consensus_10128#0      CAATACATTATAGCACAAGTCGCGCACCCTTCTCTGGAAACCATCGTCCTCTCTGTTAGT 2160
consensus_10128#2      CGCCGGCGCTGGGGGGGCGCCGGAAGCCTTTCTCTCGT--CGAGAGGCGACGCAGCCCCC 175
                                                                 *  * *  * * *     

consensus_10128#1      GAAACACCTCCAACTGAAATGGAATGCTTAAGGTGACATTTATTTGGCACATGCCCA-TN 585
consensus_10128#3      GAAACACCTCCAACTGAAATGGAATGCTTAAGGTGACATTTATTTGGCACATGCCCA-TG 77
consensus_10128#0      GAAACACCTCCAACTGAAATGGAATGCTTAAGGTGACATTTATTTGGCACATGCCCA-TG 2219
consensus_10128#2      TTCGCCCCCCCCCCTCTCCCGACTCCTCCGCGGCGAGATGGGCT-AACGCACGTGCAGCG 234
                           * ** **  **     *          ** ** **    *   * ** *  **   

consensus_10128#1      AATAC----CCCCCAGCGCCGG--CGGCGCGCGCGCGAGGTCGCCGATGGCGATGAAGCG 639
consensus_10128#3      AATATAATGCCCTCATCTTTTGGTCTGTTCATGAGAGAAATTTTGGGTGGGAATTCT-CT 136
consensus_10128#0      AATATAATGCCCTCATCTTTTGGTCTGTTCATGAGAGAAATTTTGGGTGGGAATTCT-CT 2278
consensus_10128#2      GAGATCCATCCGGGGTGGGATAGAGTTCTTATATATAAAAAAATCGGTACTTATTCTTCT 294
                        * *     **                          *       * *    **    * 

consensus_10128#1      CGACAGATCGCGAG---GAA--GAAGGGCGA--CAAATT------------CGAGACCCG 680
consensus_10128#3      TTACATACTGTAAGTGTGAATGGAAGATTTA--TAAATTGTAAGTTGACTTCATGCCCAC 194
consensus_10128#0      TTACATACTGTAAGTGTGAATGGAAGATTTA--TAAATTGTAAGTTGACTTCATGCCCAC 2336
consensus_10128#2      TCAGAGGTCAAGATCTACATGAGTTGAACCAAGTAATTTTGGAACTCTAGGTGCGGGCGC 354
                         * *       *     *   *  *    *   ** **               *  *  

consensus_10128#1      AGAAGGGACGAAATTGGGGGGAGAAATTAGGGGAA------------------------- 715
consensus_10128#3      AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 254
consensus_10128#0      AGAAAACGTGAATTCTCTTAGGAAAATGGTTATTCCCCTGAAACTTTACGCCTTGAAATT 2396
consensus_10128#2      AGTTACACTTTTTTTTCACAAAAATAATATGTGGGTCAACTGAATATTCCATGCCGAATG 414
                       **                     * *                                  

consensus_10128#1      -------------------------------------
consensus_10128#3      AAAAAAAAAAAAAAACCTCGAAA-------------- 277
consensus_10128#0      CCTCGCGCCGAGTGATTCTATTATATTGATATTTGCT 2433
consensus_10128#2      TAAAGTCTGCCGACTG--------------------- 430
                                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)