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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10183#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1314 fasta sequence
[AGAGAGTCGCAGATCGAGAGAGCTAACGATTTCTCATCTCGCGGTGGCCATGGCGGGTAGCAGCTACGGCGACGTTCATGAGTCTGCAAGAAAGTTGGTGGGCAAGGTGGCGCTGATCACCGGCGGCGCGAGCGGCATCGGGGAGTGCACGGCGCGGCTGTTCGTGAAGCACGGGGCGCAAGTCGTGGTCGCCGACATCCAGGACGAGGCGGGGGCGCGACTGTGCGCCGAGCTCGGGAGCGCCACCGCCAGCTACGTGCGGTGCGACGTGACGAGCGAGGACGACGTCGCGGCCGCGGTGGACCACGCCGTGGCGAGGTACGGGAAGCTGGACGTCATGTTCAACAACGCCGGGATCGGCGGCGCGGCGTGCCACAGCATCCTGGAGAGCACCAAGGCCGACTTTGACCGCGTGCTGGCCGTGAACCTGACGGGCCCGTTCCTGGGCACGAAGCACGCGGCGCGGGTGATGGTGGCCGCGGGGCGCGGCGGGTGCATCATCGGGACGGCGAGCCTCGCGTCGGCGGTGGCCGGCACGGCGTCGCACGCGTACACGTGCGCCAAGCGCGCGCTGGTGGGGCTGACGGAGAACGCGGCGGCGGAGCTGGGCCGCCACGGGATCCGCGTCAACTGCGTGTCGCCCGCCGCGGCGGCGACGCCGCTGGCCACGGGGTACGTGGGCCTGGAGGGGGAGGCGTTCGAGGCCGCCATGGAGGCCGTGGCCAACCTCAAGGGCGTGCGCCTCCGCGTGGAGGACATCGCCGCCGCCGTGCTGTTCCTCGCCAGCGACGACGCGCGCTACGTCAGCGGCCACAACCTGCTCATCGACGGCGGCTGCTCCATCGTCAACCCGTCCTTTGGCATCTTCAAGGACTGAGACGATCGATCGGCTGGCCATGCATTGACAAAGATCGATCGACGCTGTCACGTTAGGCTTGTGTCACGATCGACGCTGTCACAGTTTATGTTTGACTTATGTTCTTAATTTTTTTAAAAAATAAATTTTAAAAGGATGGACGATTAAAATTGAACACGAAAATTTATATATACGTTTATTATGGGACGGGGAGAGTACTCCCCCCGTCCTAAAAAACCACCCTATTACTAGATATAACCCATCATAATATTAGGAATTAGGATATACATATATCCAGATTCATAGTATTAAAATATGTCATATTTAGTCCTAGATTCGTTTTTTATAGGATGGAAGGAATATTGTTTTTTTCAAGAAACGTGTACTTTTTCCGTCCTATAAAAACCAACCTAGTCCCGGATGTGACACATTTTATTTCTATGAATATAGACATACAT]
[+] EMBL AK110700 [AGAGAGTCGCAGATCGAGAGAGCTAACGATTTCTCATCTCGCGGTGGCCATGGCGGGTAGCAGCTACGGCGACGTTCATGAGTCTGCAAGAAAGTTGGTGGGCAAGGTGGCGCTGATCACCGGCGGCGCGAGCGGCATCGGGGAGTGCACGGCGCGGCTGTTCGTGAAGCACGGGGCGCAAGTCGTGGTCGCCGACATCCAGGACGAGGCGGGGGCGCGACTGTGCGCCGAGCTCGGGAGCGCCACCGCCAGCTACGTGCGGTGCGACGTGACGAGCGAGGACGACGTCGCGGCCGCGGTGGACCACGCCGTGGCGAGGTACGGGAAGCTGGACGTCATGTTCAACAACGCCGGGATCGGCGGCGCGGCGTGCCACAGCATCCTGGAGAGCACCAAGGCCGACTTTGACCGCGTGCTGGCCGTGAACCTGACGGGCCCGTTCCTGGGCACGAAGCACGCGGCGCGGGTGATGGTGGCCGCGGGGCGCGGCGGGTGCATCATCGGGACGGCGAGCCTCGCGTCGGCGGTGGCCGGCACGGCGTCGCACGCGTACACGTGCGCCAAGCGCGCGCTGGTGGGGCTGACGGAGAACGCGGCGGCGGAGCTGGGCCGCCACGGGATCCGCGTCAACTGCGTGTCGCCCGCCGCGGCGGCGACGCCGCTGGCCACGGGGTACGTGGGCCTGGAGGGGGAGGCGTTCGAGGCCGCCATGGAGGCCGTGGCCAACCTCAAGGGCGTGCGCCTCCGCGTGGAGGACATCGCCGCCGCCGTGCTGTTCCTCGCCAGCGACGACGCGCGCTACGTCAGCGGCCACAACCTGCTCATCGACGGCGGCTGCTCCATCGTCAACCCGTCCTTTGGCATCTTCAAGGACTGAGACGATCGATCGGCTGGCCATGCATTGACAAAGATCGATCGACGCTGTCACGTTAGGCTTGTGTCACGATCGACGCTGTCACAGTTTATGTTTGACTTATGTTCTTAATTTTTTTAAAAAATAAATTTTAAAAGGATGGACGATTAAAATTGAACACGA ]
[-] EMBL CB619632 [ AGGCCGTGGCCAACCTCAAGGGGGTGCGCCTCCGAGTGGAGGACATCGCCGCCGCCGTGCTGTTCCTCGCCAGGGACGACGCGGGTTACGTCAGGGGCCACAACCTGTTCATTGAGGGGGGGTGTTCCATCGTCAACCCGTCCTTTGGCATTTTCAAGGACTGAGACGATCGATCGGCTGGCCATGCATTGACAAAGATCGATCGACGCTGTCACGTTAGGCTTGTGTCACGATCGACGCTGTCCCAGTTTATGTTTGACTTAAGTTTTTAATTTTTTTAAAAAATAAA TTTAAAAGGATGGGGGATTAAAATTGAACCCGAAAATTTATATATACGTTTATTATGGGACGGGGAGAGTACTCCCCCCGTCCTAAAAAACCACCCTATTACTAGATATAACCCATCATAATATTAGGAATTAGGATATACATATATCCAGATTCATAGTATTAAAATATGTCATATTTAGTCCTAGATTCGTTTTTTATAGGATGGAAGGAATATTGTTTTTTTCAAGAAACGTGTACTTTTTCCGTCCTATAAAAACCAACCTAGTCCCGGATGTGACACATTTTATTTCTATGAATATAGACATACAT]
consensusID : consensus_10183#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 963 fasta sequence
[AGACAGCACAAAACATCGATCCAAAAGCACTTCTCGGACAGCAAATCGTCTCGATCCTGTTATTAGTATTCAGGCGCCATGGCAGCTGGAAGCTCCCATGTTTCTGCTGATGCAAGGAAGCTGGTGGGCAAGGTGGCGGTGATCACCGGCGGCGCGAGCGGCATCGGCGCGTGCACGGCGCGGCTGTTCGTGAAGCACGGCGCCCGCGTCGTGGTCGCCGACATCCAGGACGAGCTGGGAGCTAGCCTCGTCGCCGAGCTCGGCCCGGACGCGTCCAGCTACGTGCACTGCGACGTCACGAACGAGGGCGACGTCGCCGCCGCGGTCGACCACGCCGTCGCCAGGTTCGGGAAGCTCGACGTCATGTTCAACAACGCCGGCGTCAGTGGCCCGCCGTGCTTCAGGATGAGCGAGTGCACCAAGGAGGACTTCGAGCGCGTGCTCGCCGTGAACCTGGTCGGCCCGTTCCTGGGCACCAAGCACGCGGCGCGGGTGATGGCGCCGGCGCGCCGCGGCAGCATCATCTCGACGGCGAGCCTGTCGTCGTCGGTGTCCGGCGCGGCGTCGCACGCGTACACGACGTCGAAGCACGCGCTGGTGGGGTTCACGGAGAACGCGGCCGGCGAGCTGGGCCGGCACGGGATCCGCGTCAACTGCGTTTCGCCCGCCGGGGTCGCCACGCCGCTGGCGAGGGCTGCCATGGGCATGGACGACGAGGCAATCGAGGCGATCATGGCGAACTCGGCGAACCTGAAGGGCGCAGGCGCACTCAAGGCGGACGACATCGCCGCCGCGGCGCTGTTCCTCGCCAGCGACGACGGCCGGTACGTGAGCGGCCAGAACCTGCGCGTCGACGGCGGCTTGTCCGTCGTCAACAGCAGCTTTGGTTTCTTCAGGGACTGAAAATGATTTGGGACCAGTCGTCAGTCGATCGACAATACTACATTACGTCGTTATATATGG]
[+] EMBL AK103462 [AGACAGCACAAAACATCGATCCAAAAGCACTTCTCGGACAGCAAATCGTCTCGATCCTGTTATTAGTATTCAGGCGCCATGGCAGCTGGAAGCTCCCATGTTTCTGCTGATGCAAGGAAGCTGGTGGGCAAGGTGGCGGTGATCACCGGCGGCGCGAGCGGCATCGGCGCGTGCACGGCGCGGCTGTTCGTGAAGCACGGCGCCCGCGTCGTGGTCGCCGACATCCAGGACGAGCTGGGAGCTAGCCTCGTCGCCGAGCTCGGCCCGGACGCGTCCAGCTACGTGCACTGCGACGTCACGAACGAGGGCGACGTCGCCGCCGCGGTCGACCACGCCGTCGCCAGGTTCGGGAAGCTCGACGTCATGTTCAACAACGCCGGCGTCAGTGGCCCGCCGTGCTTCAGGATGAGCGAGTGCACCAAGGAGGACTTCGAGCGCGTGCTCGCCGTGAACCTGGTCGGCCCGTTCCTGGGCACCAAGCACGCGGCGCGGGTGATGGCGCCGGCGCGCCGCGGCAGCATCATCTCGACGGCGAGCCTGTCGTCGTCGGTGTCCGGCGCGGCGTCGCACGCGTACACGACGTCGAAGCACGCGCTGGTGGGGTTCACGGAGAACGCGGCCGGCGAGCTGGGCCGGCACGGGATCCGCGTCAACTGCGTTTCGCCCGCCGGGGTCGCCACGCCGCTGGCGAGGGCTGCCATGGGCATGGACGACGAGGCAATCGAGGCGATCATGGCGAACTCGGCGAACCTGAAGGGCGCAGGCGCACTCAAGGCGGACGACATCGCCGCCGCGGCGCTGTTCCTCGCCAGCGACGACGGCCGGTACGTGAGCGGCCAGAACCTGCGCGTCGACGGCGGCTTGTCCGTCGTCAACAGCAGCTTTGGTTTCTTCAGGGACTGAAAATGATTTGGGACCAGTCGTCAGTCGATCGACAATACTACATTACGTCGTTATATATGG]
[+] EMBL AK106087 [ ACAGCACAAAACATCGATCCAAAAGCACTTCTCGGACAGCAAATCGTCTCGATCCTGTTATTAGTATTCAGGCGCCATGGCAGCTGGAAGCTCCCATGTTTCTGCTGATGCAAGGAAGCTGGTGGGCAAGGTGGCGGTGATCACCGGCGGCGCGAGCGGCATCGGCGCGTGCACGGCGCGGCTGTTCGTGAAGCACGGCGCCCGCGTCGTGGTCGCCGACATCCAGGACGAGCTGGGAGCTAGCCTCGTCGCCGAGCTCGGCCCGGACGCGTCCAGCTACGTGCACTGCGACGTCACGAACGAGGGCGACGTCGCCGCCGCGGTCGACCACGCCGTCGCCAGGTTCGGGAAGCTCGACGTCATGTTCAACAACGCCGGCGTCAGTGGCCCGCCGTGCTTCAGGATGAGCGAGTGCACCAAGGAGGACTTCGAGCGCGTGCTCGCCGTGAACCTGGTCGGCCCGTTCCTGGGCACCAAGCACGCGGCGCGGGTGATGGCGCCGGCGCGCCGCGGCAGCATCATCTCGACGGCGAGCCTGTCGTCGTCGGTGTCCGGCGCGGCGTCGCACGCGTACACGACGTCGAAGCACGCGCTGGTGGGGTTCACGGAGAACGCGGCCGGCGAGCTGGGCCGGCACGGGATCCGCGTCAACTGCGTTTCGCCCGCCGGGGTCGCCACGCCGCTGGCGAGGGCTGCCATGGGCATGGACGACGAGGCAATCGAGGCGATCATGGCGAACTCGGCGAACCTGAAGGGCGCAGGCGCACTCAAGGCGGACGACATCGCCGCCGCGGCGCTGTTCCTCGCCAGCGACGACGGCCGGTACGTGAGCGGCCAGAACCTGCGCGTCGACGGCGGCTTGTCCGTCGTCAACAGCAGCTTTGGTTTCTTCAGGGACTGAAAATGATTTGGGACCAGTCGTCAGTCGATCGACAATACTACATTACGTCGTTATATATGG]
[+] EMBL AK120852 [ GCACAAAACATCGATCCAAAAGCACTTCTCGGACAGCAAATCGTCTCGATCCTGTTATTAGTATTCAGGCGCCATGGCAGCTGGAAGCTCCCATGTTTCTGCTGATGCAAGGAAGCTGGTGGGCAAGGTGGCGGTGATCACCGGCGGCGCGAGCGGCATCGGCGCGTGCACGGCGCGGCTGTTCGTGAAGCACGGCGCCCGCGTCGTGGTCGCCGACATCCAGGACGAGCTGGGAGCTAGCCTCGTCGCCGAGCTCGGCCCGGACGCGTCCAGCTACGTGCACTGCGACGTCACGAACGAGGGCGACGTCGCCGCCGCGGTCGACCACGCCGTCGCCAGGTTCGGGAAGCTCGACGTCATGTTCAACAACGCCGGCGTCAGTGGCCCGCCGTGCTTCAGGATGAGCGAGTGCACCAAGGAGGACTTCGAGCGCGTGCTCGCCGTGAACCTGGTCGGCCCGTTCCTGGGCACCAAGCACGCGGCGCGGGTGATGGCGTCGGCGCGCCGCGGCAGCATCATCTCGACGGCGAGCCTGTCGTCGTCGGTGTCCGGCGCGGCGTCGCACGCGTACACGACGTCGAAGCACGCGCTGGTGGGGTTCACGGAGAACGCGGCCGGCGAGCTGGGCCGGCACGGGATCCGCGTCAACTGCGTTTCGCCCGCCGGGGTCGCCACGCCGCTGGCGAGGGCTGCCATGGGCATGGACGACGAGGCAATCGAGGCGATCATGGCGAACTCGGCGAACCTGAAGGGCGCAGGCGCACTCAAGGCGGACGACATCGCCGCCGCGGCGCTGTTCCTCGCCAGCGACGACGGCCGGTACGTGAGCGGCCAGAACCTGCGCGTCGACGGCGGCTTGTCCGTCGTCAACAGCAGCTTTGGTTTCTTCAGGGACTGAAAATGATTTGGGACCAGTCGTCAGTCGATCGACAATACTACATTACGTCGTTATATATGG]
[+] EMBL C71973 [ ATCCAAAAGCACTTCTCGGACAGCAAATCGTCTCGNTCCTGTTATTAGTATTCAGGCGCCATGGCAGCTGGAAGCTCCCATGTTTCTGCTGATGCAAGGAAGCTGGTGGGCAAGGTGGCGGTGATCACCGGCGGCGCGA CGGCATCGGCGCGTGCACGGCGCGGCTGTTCGTNAAGCACGGCGCCCGCNTCGTGGTCGCCGACATCCAGGACGAGCTGGGAGCTAGCCTCGTCGCCGAGCTCGGCCCGGACGCGTCCAGCTACGTGCACTGCGACGTCACGAACGAGGGCGACGTCGCCGCCGCGGTCGACCACGCCGTCGCCAGGTTCGGGAAGTTCGACGTCATGTTCAACAACGCCGGCGT AATGGCCCGCCGTGCTTCAGGATNAGCGAGTTCACCA ]
[+] EMBL AU101071 [ GCGTNAA TGCGTTTCGCCCGCCGGGGTCGCCAC CCGCTGGCGAGGGCTGCCATGGGCATGGACGACGAGGCAATCGAGGCGATCATGGCGAACTCGGCGAACCTGAAGGGCGCAGGCGCACTCAAGGCGGACGACATCGCCGCCGCGGCGCTGTTCCTCGCCAGCGACGACGGCCGGTACGTGAGCGGCCAGAACCTGCGCGTCGACGGCGGCTTGTCCGTCGTCAACAGCAGCTTTGGTTTCTTCAGGGACTGAAAATGATTTGGGACCAGTCGTCAGTCGATCGACAATACTACATTACGTCGTTATATATGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10183#0 -------------------------AGAGAGTCGCAGATCGAGAGAGCTAACGAT----T 31
consensus_10183#1 AGACAGCACAAAACATCGATCCAAAAGCACTTCTCGGACAGCAAATCGTCTCGATCCTGT 60
** ** * ** * * * **** *
consensus_10183#0 TCTCATCTCGCGGTGGCCATGGCGGGTAGCAGCTACGGCGACGTTCATGAGTCTGCAAGA 91
consensus_10183#1 TATTAGTATTCAGGCGCCATGGCAGCTGGAAGCTCCC---ATGTTTCTGCTGATGCAAGG 117
* * * * * ******** * * * **** * * *** ** ******
consensus_10183#0 AAGTTGGTGGGCAAGGTGGCGCTGATCACCGGCGGCGCGAGCGGCATCGGGGAGTGCACG 151
consensus_10183#1 AAGCTGGTGGGCAAGGTGGCGGTGATCACCGGCGGCGCGAGCGGCATCGGCGCGTGCACG 177
*** ***************** **************************** * *******
consensus_10183#0 GCGCGGCTGTTCGTGAAGCACGGGGCGCAAGTCGTGGTCGCCGACATCCAGGACGAGGCG 211
consensus_10183#1 GCGCGGCTGTTCGTGAAGCACGGCGCCCGCGTCGTGGTCGCCGACATCCAGGACGAGCTG 237
*********************** ** * *************************** *
consensus_10183#0 GGGGCGCGACTGTGCGCCGAGCTCGGGAGCGCCACCGCCAGCTACGTGCGGTGCGACGTG 271
consensus_10183#1 GGAGCTAGCCTCGTCGCCGAGCTCGGCCCGGACGCGTCCAGCTACGTGCACTGCGACGTC 297
** ** * ** ************ * * * ************ ********
consensus_10183#0 ACGAGCGAGGACGACGTCGCGGCCGCGGTGGACCACGCCGTGGCGAGGTACGGGAAGCTG 331
consensus_10183#1 ACGAACGAGGGCGACGTCGCCGCCGCGGTCGACCACGCCGTCGCCAGGTTCGGGAAGCTC 357
**** ***** ********* ******** *********** ** **** *********
consensus_10183#0 GACGTCATGTTCAACAACGCCGGGATCGGCGGCGCGGCGTGCCACAGCATCCTGGAGAGC 391
consensus_10183#1 GACGTCATGTTCAACAACGCCGGCGTCAGTGGCCCGCCGTGCTTCAGGATGAGCGAGTGC 417
*********************** ** * *** ** ***** *** ** *** **
consensus_10183#0 ACCAAGGCCGACTTTGACCGCGTGCTGGCCGTGAACCTGACGGGCCCGTTCCTGGGCACG 451
consensus_10183#1 ACCAAGGAGGACTTCGAGCGCGTGCTCGCCGTGAACCTGGTCGGCCCGTTCCTGGGCACC 477
******* ***** ** ******** ************ *****************
consensus_10183#0 AAGCACGCGGCGCGGGTGATGGTGGCCGCGGGGCGCGGCGGGTGCATCATCGGGACGGCG 511
consensus_10183#1 AAGCACGCGGCGCGGGTGATGGCGCCGGCGCGCCGCGGCAG---CATCATCTCGACGGCG 534
********************** * * *** * ****** * ******* *******
consensus_10183#0 AGCCTCGCGTCGGCGGTGGCCGGCACGGCGTCGCACGCGTACACGTGCGCCAAGCGCGCG 571
consensus_10183#1 AGCCTGTCGTCGTCGGTGTCCGGCGCGGCGTCGCACGCGTACACGACGTCGAAGCACGCG 594
***** ***** ***** ***** ******************** * **** ****
consensus_10183#0 CTGGTGGGGCTGACGGAGAACGCGGCGGCGGAGCTGGGCCGCCACGGGATCCGCGTCAAC 631
consensus_10183#1 CTGGTGGGGTTCACGGAGAACGCGGCCGGCGAGCTGGGCCGGCACGGGATCCGCGTCAAC 654
********* * ************** * *********** ******************
consensus_10183#0 TGCGTGTCGCCCGCCGCGGCGGCGACGCCGCTGGCCACGGGGTACGTGGGCCTGGAGGGG 691
consensus_10183#1 TGCGTTTCGCCCGCCGGGGTCGCCACGCCGCTGGCGAGGGCTGCCATGGGCATGGACGAC 714
***** ********** ** ** *********** * ** * ***** **** *
consensus_10183#0 GAGGCGTTCGAGGCCGCCATGGAGGCCGTGGCCAACCTCAAGGGCGTGCGC---CTCCGC 748
consensus_10183#1 GAGGCAATCGAGGCGATCATGGCGAACTCGGCGAACCTGAAGGGCGCAGGCGCACTCAAG 774
***** ******* ***** * * *** ***** ******* ** ***
consensus_10183#0 GTGGAGGACATCGCCGCCGCCGTGCTGTTCCTCGCCAGCGACGACGCGCGCTACGTCAGC 808
consensus_10183#1 GCGGACGACATCGCCGCCGCGGCGCTGTTCCTCGCCAGCGACGACGGCCGGTACGTGAGC 834
* *** ************** * *********************** ** ***** ***
consensus_10183#0 GGCCACAACCTGCTCATCGACGGCGGCTGCTCCATCGTCAACCCGTCCTTTGGCATCTTC 868
consensus_10183#1 GGCCAGAACCTGCGCGTCGACGGCGGCTTGTCCGTCGTCAACAGCAGCTTTGGTTTCTTC 894
***** ******* * ************ *** ******** ****** *****
consensus_10183#0 AAGGACTGAGA-CGATC---GATCGGCTGGCCATGCATTGACAAAGATCGATCGACGCTG 924
consensus_10183#1 AGGGACTGAAAATGATTTGGGACCAGTCGTCAGTCGATCGACAATACTACATT-ACGTCG 953
* ******* * *** ** * * * * * ** ***** * ** *** *
consensus_10183#0 TCACGTTAGGCTTGTGTCACGATCGACGCTGTCACAGTTTATGTTTGACTTATGTTCTTA 984
consensus_10183#1 TTATATATGG-------------------------------------------------- 963
* * * **
consensus_10183#0 ATTTTTTTAAAAAATAAATTTTAAAAGGATGGACGATTAAAATTGAACACGAAAATTTAT 1044
consensus_10183#1 ------------------------------------------------------------
consensus_10183#0 ATATACGTTTATTATGGGACGGGGAGAGTACTCCCCCCGTCCTAAAAAACCACCCTATTA 1104
consensus_10183#1 ------------------------------------------------------------
consensus_10183#0 CTAGATATAACCCATCATAATATTAGGAATTAGGATATACATATATCCAGATTCATAGTA 1164
consensus_10183#1 ------------------------------------------------------------
consensus_10183#0 TTAAAATATGTCATATTTAGTCCTAGATTCGTTTTTTATAGGATGGAAGGAATATTGTTT 1224
consensus_10183#1 ------------------------------------------------------------
consensus_10183#0 TTTTCAAGAAACGTGTACTTTTTCCGTCCTATAAAAACCAACCTAGTCCCGGATGTGACA 1284
consensus_10183#1 ------------------------------------------------------------
consensus_10183#0 CATTTTATTTCTATGAATATAGACATACAT 1314
consensus_10183#1 ------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||