These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10184#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 887 fasta sequence [GAGTTTCTCATNCCAAGACAGTTTCCAGTATCAGACTTCCCCAGTGTTTCTCCACGGTATGAAAACGCCCAATAGAATCATTTCTATACCAACTGCCCAAAATGCCTTCATTTGAGTTTCTCCCCAAGACAATTTCAGCAAATGTAAGACTTCCACCAGCATTTTCCCGGTCCTCCAATAATAGATCCAGCACATC-CAAAGGTCACTGGTTTGTCTGGCGACCCAGACAAAGCCACAAAGATAAAACACTCACAGCTTCACATCACTACTTCCATTAAACTATTTACAGACCCAAAGTGCTTCCGGCCTTCCAATCCTCATCATTCTACCTCAACATCTTCCCATGTAGACATACCTGATTCTTCAACTGTTGTGTGGCGCCAAATAAACCCAAGGGCGACCTCAAAACATCTTTGGACGCATTGCATCAAAGTGGGCAACTGTACAAGTACAAT-TCATATATACAAAAGGACAATGACGCCCTACCTTGATGCACTGGATGACTGTCCAGTGCTTACAATGAAAGACTTAAAAGAAGGCATTGATTCATCAAGCCATGTAATATTGTGTTAGCTGGACAAATGCATCTATCTATTGAACAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCCATATAAACAACCACTTGCCCAGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACATTTGGGAAAGGAAGCTGGCTAAGGAGAACAACAATCCAAATAGGATGACTATTTACAGTTTGGTTAACCTAGTTAT-----TTGGGAAGCCTCCAAGTGTAATGATGGGACCAGGGCAAGATGCCACTTTCGCGACCTTCTGCAAGGGAGGCTAATGAACCCTGTTTTGTATCTT] [-] EMBL C74912 [GAGTTTCTCATNCCAAGACAGTTTCCAGTATCAGACTTCCCCAGTGTTTCTCCACGGTATGAAAACGCCCAATAGAATCATTTCTATACCAACTGCCCAAAATGCCTTCATTTGAGTTTCTCCCCAAGACAATTTCAGCAAATGTAAGACTTCCACCAGCATTTTCCCGGTCCTCCAATAATAGATCCAGCACATCNCAAAGGTCACTGGTTTGTCTGGCGACCCAGACAAAGCCACAAAGATAAAACACTCACAGCTTCACATCACTACTTCCATTAAACTATTTACAGACCCAAAGTGCTTCCGGCCTTCCAATCCTCATCATTCTACCTCAACATCTTCCCATGTAGACATACCTGATTCTTCAACTGTTGTGTGGCGCCAAATAAACCCAAGGGCGACCTCAAAACATCTTTGGACGCATTGCATCAAAGTGGGCAACTGT ] [+] EMBL CB663497 [ CCACCAGCATTTTCCCGGTCCTCCAATAATAGATCCAGCACATC CAAAGGTCACTGGTTTGTCTGGCGACCCAGACAAAGCCACAAAGATAAAACACTCACAGCTTCACATCACTACTTCCATTAAACTATTTACAGACCCAAAGTGCTTCCGGCCTTCCAATCCTCATCATTCTACCTCAACATCTTCCCATGTAGACATACCTGATTCTTCAACTGTTGTGTGGCGCCAAATAAACCCAAGGGCGACCTCAAAACATCTTTGGACGCATTGCATCAAAGTGGGCAACTGTACAAGTACAAT TCATATATACAAAAGGACAATGACGCCCTACCTTGATGCACTGGATGACTGTCCAGTGCTTACAATGAAAGACTTAAAAGAAGGCATTGATTCATCAAGCCATGTAATATTGTGTTAGCTGGACAAATGCATCTATCTATTGAACAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCCATATAAACAACCACTTGCCCAGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACATTTGGGAAAGGAAGCTGGCTAAGGAGAACAACAATCCAAATAGGATGACTATTTACAGTTTGGTTAACCTAGTTAT TTGGGAAGCCTCCAAGTGTAATGATGGGACCAGGGCAAGATGCCACTTTCGCGACCTTCTGCAAGGGAGGCTAATGAACCCTGTTTTGTATCTT] [+] EMBL AU225142 [ gccgCTCAAAACATCTTTGGACGCATTGCATCAAAGTGGGCAACTGTACAAGTACAAT TCATATATACAAAAGGACAATGACGCCCTACCTTGATGCACTGGATGACTGTCCAGTGCTTACAATGAAAGACTTAAAAGAAGGCATTGATTCATCAAGCCATGTAATATTGTGTTAGCTGGACAAATGCATCTATCTATTGAACAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCCATATAAACAACCACTTGCCCAGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACATTTGGGAAAGGAAGCTGGCTAAGGAGAACAACAATCCAAATAGGATGACTATTTACAGTTTGGTTAACCTAGTTAT TTGGGAAGCCTCC AGTGTAATGATGGGACNAGGGCAAGATG CACTTTCGCGAgcgg ] [-] EMBL BI811758 [ tttttttAAACATC TTGGACGCA TGTATCAAAGTGGGCAAC GTACAAGTACAATCTCATATATACAAAAGGACAATGACGCCTTACCTTGATGCACTGGATGACTGTCCAGTGCTTACAATGAAAGACTTAAAAGAAGGCA TGATTCATCAAGCCATCTAATA TGTGTTAGCTGGACAAATGCATCTATCTATTGAACAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCCATATAAACAACCACTTGCCCAGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACATTTGGAAAAGGAAGCTGGCTAAGGAGAACAACAATCCAAATAGGATGACTATTTACAG TTGGTTAACCTAGTTATCATTATTGGGAAGCCTCCAAGTGTAATGATGGGACCAGGGCAAGATGCCACTTTCGCGACCTTCTGCAAGGGAGGCTAATGAATCCTG TTTGTAT ] [-] EMBL D42323 [ CCCTACCTTGAGTCACTGGATGACTGTCCAGTGCTTACAATGAAAGAGCTAAAAGAAGGCATTGATTCATCAAGCCATGTAATATTGTGTTAGCTGGACAAATGCATCTATCTATTGAACAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCCATATAAACAACCACTTGCCCAGGCAGTCCCCACTANCCTGATTTATCATATGGAAGCACCTCCAAACCTTTTGACATTTGG ] consensusID : consensus_10184#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 539 fasta sequence [TTTTTTTTTTGGGGCAACTGTGCAAGTACAATTCATATATACAAAAGGACAATGACGCCCTACCTTGATGCACTGGATGACTGTCCAGTGCTTACAATGAAAGACTTAAAAGAAGGCATTGATTCATCAAGCCAGTGTAATATGTGTTAGCTGGACAAAGTGCATCTATCTATTGAAGCAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCCATATAAACAACCACTTGCCCAGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACATTTGGGAAAGGAAGCTGGCTAAGGAGAACAACAATCCAAATAGGATGACTATTTACAGTTTGGTTAACCTAGTTATTGGGGAAGCCTCCAAGTGTAATGATGGGACCAGGGCAAGATGCCACTTTCGCGACTTCTGAAGGGAGGCTAATGAACCCTGTTTGTATCTTACAAACTGAGGTCAGATCAGAGATGTAGATATGCCCAAGAAGCAATGACCAGAAGCTGTGGACTTCTATAACACAC] [-] EMBL BI812742 [TTTTTTTTTTGGGGCAACTGTGCAAGTACAATTCATATATACAAAAGGACAATGACGCCCTACCTTGATGCACTGGATGACTGTCCAGTGCTTACAATGAAAGACTTAAAAGAAGGCATTGATTCATCAAGCCAGTGTAATATGTGTTAGCTGGACAAAGTGCATCTATCTATTGAAGCAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCCATATAAACAACCACTTGCCCAGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACATTTGGGAAAGGAAGCTGGCTAAGGAGAACAACAATCCAAATAGGATGACTATTTACAGTTTGGTTAACCTAGTTATTGGGGAAGCCTCCAAGTGTAATGATGGGACCAGGGCAAGATGCCACTTTCGCGACTTCTGAAGGGAGGCTAATGAACCCTGTTTGTATCTTACAAACTGAGGTCAGATCAGAGATGTAGATATGCCCAAGAAGCAATGACCAGAAGCTGTGGACTTCTATAACACAC] consensusID : consensus_10184#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence [TTTTTTTTTTGTACAGTACATTCATATATACAAAAGGCATGACGCCTTACTTGATGCACTGGTGACTGTCAGTGTTACATGAAGACTTAAGAAGGGTTGTTCATCAAGCCATCTAATATTGTGTTAGTGGCAATGGATCTATCTATTGAACAAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCATATAAACAAACACTTGCCAGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACACTTTTGGAAAAGGAAGCTGGTAAGGAAGAACAACAATCCAAATAGGATGACTATTTACAGTTGGTTAACCTAGTTAATCATTATTGGGAAGCCTCCAAGTGTTATGATGGGACCAGGGCAGATGCCACTTTCGGACTT] [-] EMBL BI802759 [TTTTTTTTTTGTACAGTACATTCATATATACAAAAGGCATGACGCCTTACTTGATGCACTGGTGACTGTCAGTGTTACATGAAGACTTAAGAAGGGTTGTTCATCAAGCCATCTAATATTGTGTTAGTGGCAATGGATCTATCTATTGAACAAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCATATAAACAAACACTTGCCAGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACACTTTTGGAAAAGGAAGCTGGTAAGGAAGAACAACAATCCAAATAGGATGACTATTTACAGTTGGTTAACCTAGTTAATCATTATTGGGAAGCCTCCAAGTGTTATGATGGGACCAGGGCAGATGCCACTTTCGGACTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10184#1 ------------------------------------------------------------ consensus_10184#2 ------------------------------------------------------------ consensus_10184#0 GAGTTTCTCATNCCAAGACAGTTTCCAGTATCAGACTTCCCCAGTGTTTCTCCACGGTAT 60 consensus_10184#1 ------------------------------------------------------------ consensus_10184#2 ------------------------------------------------------------ consensus_10184#0 GAAAACGCCCAATAGAATCATTTCTATACCAACTGCCCAAAATGCCTTCATTTGAGTTTC 120 consensus_10184#1 ------------------------------------------------------------ consensus_10184#2 ------------------------------------------------------------ consensus_10184#0 TCCCCAAGACAATTTCAGCAAATGTAAGACTTCCACCAGCATTTTCCCGGTCCTCCAATA 180 consensus_10184#1 ------------------------------------------------------------ consensus_10184#2 ------------------------------------------------------------ consensus_10184#0 ATAGATCCAGCACATCCAAAGGTCACTGGTTTGTCTGGCGACCCAGACAAAGCCACAAAG 240 consensus_10184#1 ------------------------------------------------------------ consensus_10184#2 ------------------------------------------------------------ consensus_10184#0 ATAAAACACTCACAGCTTCACATCACTACTTCCATTAAACTATTTACAGACCCAAAGTGC 300 consensus_10184#1 ------------------------------------------------------------ consensus_10184#2 ------------------------------------------------------------ consensus_10184#0 TTCCGGCCTTCCAATCCTCATCATTCTACCTCAACATCTTCCCATGTAGACATACCTGAT 360 consensus_10184#1 ------------------------------------------------------------ consensus_10184#2 ------------------------------------------------------------ consensus_10184#0 TCTTCAACTGTTGTGTGGCGCCAAATAAACCCAAGGGCGACCTCAAAACATCTTTGGACG 420 consensus_10184#1 ---TTTTTTTTTTGGGGCAACTGTGCAAGTACAATTCATATATACAAAAGGACAATGACG 57 consensus_10184#2 ----TTTTTTTTT--------TGTACA-GTACA-TTCATATATACAAAAGGC--ATGACG 44 consensus_10184#0 CATTGCATCAAAGTGGGCAACTGTACAAGTACAATTCATATATACAAAAGGACAATGACG 480 * *** ** ***** ***************** ****** consensus_10184#1 CCCTACCTTGATGCACTGGATGACTGTCCAGTGCTTACAATGAAAGACTTAAAAGAAGGC 117 consensus_10184#2 CCTTAC-TTGATGCACTGG-TGACTGTC-AGTG-TTACAT--GAAGACTTAAGAAGGG-- 96 consensus_10184#0 CCCTACCTTGATGCACTGGATGACTGTCCAGTGCTTACAATGAAAGACTTAAAAGAAGGC 540 ** *** ************ ******** **** ***** ********* * * consensus_10184#1 ATTGATTCATCAAGCCAGTGTAATAT-GTGTTAGCTGGACAAAGTGCATCTATCTATTGA 176 consensus_10184#2 --TTGTTCATCAAGCCA-TCTAATATTGTGTTAGT--GGCAA--TGGATCTATCTATTGA 149 consensus_10184#0 ATTGATTCATCAAGCCA-TGTAATATTGTGTTAGCTGGACAAA-TGCATCTATCTATTGA 598 * ************ * ****** ******* * *** ** ************* consensus_10184#1 AGCAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCCATATAAACAACCACTT 236 consensus_10184#2 ACAAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCC-ATATAAACAAACACTT 208 consensus_10184#0 A-CAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCCATATAAACAACCACTT 657 * **************************************** ********** ***** consensus_10184#1 GCCCAGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACA 296 consensus_10184#2 GCC-AGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACA 267 consensus_10184#0 GCCCAGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACA 717 *** ******************************************************** consensus_10184#1 --TTTGGGAAAGGAAGCTGGCTAAGGAGAACAACAATCCAAATAGGATGACTATTTACAG 354 consensus_10184#2 CTTTTGGAAAAGGAAGCTGGTAAGGAAGAACAACAATCCAAATAGGATGACTATTTACAG 327 consensus_10184#0 --TTTGGGAAAGGAAGCTGGCTAAGGAGAACAACAATCCAAATAGGATGACTATTTACAG 775 ***** ************ * * ********************************** consensus_10184#1 TTTGGTTAACCTAGTTATTG------GGGAAGCCTCCAAGTGTAATGATGGGACCAGGGC 408 consensus_10184#2 TT-GGTTAACCTAGTTAATCATTATTGGGAAGCCTCCAAGTGTTATGATGGGACCAGGGC 386 consensus_10184#0 TTTGGTTAACCTAGTTATTT------GGGAAGCCTCCAAGTGTAATGATGGGACCAGGGC 829 ** ************** * ***************** **************** consensus_10184#1 AAGATGCCACTTTCGCGAC-TTCTG-AAGGGAGGCTAATGAACCCTGTTT-GTATCTTAC 465 consensus_10184#2 A-GATGCCACTTTCG-GAC-TT-------------------------------------- 405 consensus_10184#0 AAGATGCCACTTTCGCGACCTTCTGCAAGGGAGGCTAATGAACCCTGTTTTGTATCTT-- 887 * ************* *** ** consensus_10184#1 AAACTGAGGTCAGATCAGAGATGTAGATATGCCCAAGAAGCAATGACCAGAAGCTGTGGA 525 consensus_10184#2 ------------------------------------------------------------ consensus_10184#0 ------------------------------------------------------------ consensus_10184#1 CTTCTATAACACAC 539 consensus_10184#2 -------------- consensus_10184#0 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||