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Oryza sativa
cluster # 10184 cluster # 10184       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10184#0 length = 887 sequences # 5  
consensus_10184#1 length = 539 sequences # 1  
consensus_10184#2 length = 405 sequences # 1  

consensusID : consensus_10184#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 887
fasta sequence
                              [GAGTTTCTCATNCCAAGACAGTTTCCAGTATCAGACTTCCCCAGTGTTTCTCCACGGTATGAAAACGCCCAATAGAATCATTTCTATACCAACTGCCCAAAATGCCTTCATTTGAGTTTCTCCCCAAGACAATTTCAGCAAATGTAAGACTTCCACCAGCATTTTCCCGGTCCTCCAATAATAGATCCAGCACATC-CAAAGGTCACTGGTTTGTCTGGCGACCCAGACAAAGCCACAAAGATAAAACACTCACAGCTTCACATCACTACTTCCATTAAACTATTTACAGACCCAAAGTGCTTCCGGCCTTCCAATCCTCATCATTCTACCTCAACATCTTCCCATGTAGACATACCTGATTCTTCAACTGTTGTGTGGCGCCAAATAAACCCAAGGGCGACCTCAAAACATCTTTGGACGCATTGCATCAAAGTGGGCAACTGTACAAGTACAAT-TCATATATACAAAAGGACAATGACGCCCTACCTTGATGCACTGGATGACTGTCCAGTGCTTACAATGAAAGACTTAAAAGAAGGCATTGATTCATCAAGCCATGTAATATTGTGTTAGCTGGACAAATGCATCTATCTATTGAACAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCCATATAAACAACCACTTGCCCAGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACATTTGGGAAAGGAAGCTGGCTAAGGAGAACAACAATCCAAATAGGATGACTATTTACAGTTTGGTTAACCTAGTTAT-----TTGGGAAGCCTCCAAGTGTAATGATGGGACCAGGGCAAGATGCCACTTTCGCGACCTTCTGCAAGGGAGGCTAATGAACCCTGTTTTGTATCTT]

[-] EMBL C74912               [GAGTTTCTCATNCCAAGACAGTTTCCAGTATCAGACTTCCCCAGTGTTTCTCCACGGTATGAAAACGCCCAATAGAATCATTTCTATACCAACTGCCCAAAATGCCTTCATTTGAGTTTCTCCCCAAGACAATTTCAGCAAATGTAAGACTTCCACCAGCATTTTCCCGGTCCTCCAATAATAGATCCAGCACATCNCAAAGGTCACTGGTTTGTCTGGCGACCCAGACAAAGCCACAAAGATAAAACACTCACAGCTTCACATCACTACTTCCATTAAACTATTTACAGACCCAAAGTGCTTCCGGCCTTCCAATCCTCATCATTCTACCTCAACATCTTCCCATGTAGACATACCTGATTCTTCAACTGTTGTGTGGCGCCAAATAAACCCAAGGGCGACCTCAAAACATCTTTGGACGCATTGCATCAAAGTGGGCAACTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB663497             [                                                                                                                                                        CCACCAGCATTTTCCCGGTCCTCCAATAATAGATCCAGCACATC CAAAGGTCACTGGTTTGTCTGGCGACCCAGACAAAGCCACAAAGATAAAACACTCACAGCTTCACATCACTACTTCCATTAAACTATTTACAGACCCAAAGTGCTTCCGGCCTTCCAATCCTCATCATTCTACCTCAACATCTTCCCATGTAGACATACCTGATTCTTCAACTGTTGTGTGGCGCCAAATAAACCCAAGGGCGACCTCAAAACATCTTTGGACGCATTGCATCAAAGTGGGCAACTGTACAAGTACAAT TCATATATACAAAAGGACAATGACGCCCTACCTTGATGCACTGGATGACTGTCCAGTGCTTACAATGAAAGACTTAAAAGAAGGCATTGATTCATCAAGCCATGTAATATTGTGTTAGCTGGACAAATGCATCTATCTATTGAACAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCCATATAAACAACCACTTGCCCAGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACATTTGGGAAAGGAAGCTGGCTAAGGAGAACAACAATCCAAATAGGATGACTATTTACAGTTTGGTTAACCTAGTTAT     TTGGGAAGCCTCCAAGTGTAATGATGGGACCAGGGCAAGATGCCACTTTCGCGACCTTCTGCAAGGGAGGCTAATGAACCCTGTTTTGTATCTT]
[+] EMBL AU225142             [                                                                                                                                                                                                                                                                                                                                                                                                              gccgCTCAAAACATCTTTGGACGCATTGCATCAAAGTGGGCAACTGTACAAGTACAAT TCATATATACAAAAGGACAATGACGCCCTACCTTGATGCACTGGATGACTGTCCAGTGCTTACAATGAAAGACTTAAAAGAAGGCATTGATTCATCAAGCCATGTAATATTGTGTTAGCTGGACAAATGCATCTATCTATTGAACAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCCATATAAACAACCACTTGCCCAGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACATTTGGGAAAGGAAGCTGGCTAAGGAGAACAACAATCCAAATAGGATGACTATTTACAGTTTGGTTAACCTAGTTAT     TTGGGAAGCCTCC AGTGTAATGATGGGACNAGGGCAAGATG CACTTTCGCGAgcgg                                    ]
[-] EMBL BI811758             [                                                                                                                                                                                                                                                                                                                                                                                                               tttttttAAACATC TTGGACGCA TGTATCAAAGTGGGCAAC GTACAAGTACAATCTCATATATACAAAAGGACAATGACGCCTTACCTTGATGCACTGGATGACTGTCCAGTGCTTACAATGAAAGACTTAAAAGAAGGCA TGATTCATCAAGCCATCTAATA TGTGTTAGCTGGACAAATGCATCTATCTATTGAACAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCCATATAAACAACCACTTGCCCAGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACATTTGGAAAAGGAAGCTGGCTAAGGAGAACAACAATCCAAATAGGATGACTATTTACAG TTGGTTAACCTAGTTATCATTATTGGGAAGCCTCCAAGTGTAATGATGGGACCAGGGCAAGATGCCACTTTCGCGACCTTCTGCAAGGGAGGCTAATGAATCCTG TTTGTAT   ]
[-] EMBL D42323               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CCCTACCTTGAGTCACTGGATGACTGTCCAGTGCTTACAATGAAAGAGCTAAAAGAAGGCATTGATTCATCAAGCCATGTAATATTGTGTTAGCTGGACAAATGCATCTATCTATTGAACAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCCATATAAACAACCACTTGCCCAGGCAGTCCCCACTANCCTGATTTATCATATGGAAGCACCTCCAAACCTTTTGACATTTGG                                                                                                                                                                          ]


>consensus_10184#0 GAGTTTCTCATNCCAAGACAGTTTCCAGTATCAGACTTCCCCAGTGTTTCTCCACGGTAT GAAAACGCCCAATAGAATCATTTCTATACCAACTGCCCAAAATGCCTTCATTTGAGTTTC TCCCCAAGACAATTTCAGCAAATGTAAGACTTCCACCAGCATTTTCCCGGTCCTCCAATA ATAGATCCAGCACATCCAAAGGTCACTGGTTTGTCTGGCGACCCAGACAAAGCCACAAAG ATAAAACACTCACAGCTTCACATCACTACTTCCATTAAACTATTTACAGACCCAAAGTGC TTCCGGCCTTCCAATCCTCATCATTCTACCTCAACATCTTCCCATGTAGACATACCTGAT TCTTCAACTGTTGTGTGGCGCCAAATAAACCCAAGGGCGACCTCAAAACATCTTTGGACG CATTGCATCAAAGTGGGCAACTGTACAAGTACAATTCATATATACAAAAGGACAATGACG CCCTACCTTGATGCACTGGATGACTGTCCAGTGCTTACAATGAAAGACTTAAAAGAAGGC ATTGATTCATCAAGCCATGTAATATTGTGTTAGCTGGACAAATGCATCTATCTATTGAAC AACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCCATATAAACAACCACTTGCC CAGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACATTT GGGAAAGGAAGCTGGCTAAGGAGAACAACAATCCAAATAGGATGACTATTTACAGTTTGG TTAACCTAGTTATTTGGGAAGCCTCCAAGTGTAATGATGGGACCAGGGCAAGATGCCACT TTCGCGACCTTCTGCAAGGGAGGCTAATGAACCCTGTTTTGTATCTT



consensusID : consensus_10184#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 539
fasta sequence
                              [TTTTTTTTTTGGGGCAACTGTGCAAGTACAATTCATATATACAAAAGGACAATGACGCCCTACCTTGATGCACTGGATGACTGTCCAGTGCTTACAATGAAAGACTTAAAAGAAGGCATTGATTCATCAAGCCAGTGTAATATGTGTTAGCTGGACAAAGTGCATCTATCTATTGAAGCAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCCATATAAACAACCACTTGCCCAGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACATTTGGGAAAGGAAGCTGGCTAAGGAGAACAACAATCCAAATAGGATGACTATTTACAGTTTGGTTAACCTAGTTATTGGGGAAGCCTCCAAGTGTAATGATGGGACCAGGGCAAGATGCCACTTTCGCGACTTCTGAAGGGAGGCTAATGAACCCTGTTTGTATCTTACAAACTGAGGTCAGATCAGAGATGTAGATATGCCCAAGAAGCAATGACCAGAAGCTGTGGACTTCTATAACACAC]

[-] EMBL BI812742             [TTTTTTTTTTGGGGCAACTGTGCAAGTACAATTCATATATACAAAAGGACAATGACGCCCTACCTTGATGCACTGGATGACTGTCCAGTGCTTACAATGAAAGACTTAAAAGAAGGCATTGATTCATCAAGCCAGTGTAATATGTGTTAGCTGGACAAAGTGCATCTATCTATTGAAGCAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCCATATAAACAACCACTTGCCCAGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACATTTGGGAAAGGAAGCTGGCTAAGGAGAACAACAATCCAAATAGGATGACTATTTACAGTTTGGTTAACCTAGTTATTGGGGAAGCCTCCAAGTGTAATGATGGGACCAGGGCAAGATGCCACTTTCGCGACTTCTGAAGGGAGGCTAATGAACCCTGTTTGTATCTTACAAACTGAGGTCAGATCAGAGATGTAGATATGCCCAAGAAGCAATGACCAGAAGCTGTGGACTTCTATAACACAC]


>consensus_10184#1 TTTTTTTTTTGGGGCAACTGTGCAAGTACAATTCATATATACAAAAGGACAATGACGCCC TACCTTGATGCACTGGATGACTGTCCAGTGCTTACAATGAAAGACTTAAAAGAAGGCATT GATTCATCAAGCCAGTGTAATATGTGTTAGCTGGACAAAGTGCATCTATCTATTGAAGCA ACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCCATATAAACAACCACTTGCCC AGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACATTTG GGAAAGGAAGCTGGCTAAGGAGAACAACAATCCAAATAGGATGACTATTTACAGTTTGGT TAACCTAGTTATTGGGGAAGCCTCCAAGTGTAATGATGGGACCAGGGCAAGATGCCACTT TCGCGACTTCTGAAGGGAGGCTAATGAACCCTGTTTGTATCTTACAAACTGAGGTCAGAT CAGAGATGTAGATATGCCCAAGAAGCAATGACCAGAAGCTGTGGACTTCTATAACACAC



consensusID : consensus_10184#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence
                              [TTTTTTTTTTGTACAGTACATTCATATATACAAAAGGCATGACGCCTTACTTGATGCACTGGTGACTGTCAGTGTTACATGAAGACTTAAGAAGGGTTGTTCATCAAGCCATCTAATATTGTGTTAGTGGCAATGGATCTATCTATTGAACAAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCATATAAACAAACACTTGCCAGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACACTTTTGGAAAAGGAAGCTGGTAAGGAAGAACAACAATCCAAATAGGATGACTATTTACAGTTGGTTAACCTAGTTAATCATTATTGGGAAGCCTCCAAGTGTTATGATGGGACCAGGGCAGATGCCACTTTCGGACTT]

[-] EMBL BI802759             [TTTTTTTTTTGTACAGTACATTCATATATACAAAAGGCATGACGCCTTACTTGATGCACTGGTGACTGTCAGTGTTACATGAAGACTTAAGAAGGGTTGTTCATCAAGCCATCTAATATTGTGTTAGTGGCAATGGATCTATCTATTGAACAAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCATATAAACAAACACTTGCCAGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACACTTTTGGAAAAGGAAGCTGGTAAGGAAGAACAACAATCCAAATAGGATGACTATTTACAGTTGGTTAACCTAGTTAATCATTATTGGGAAGCCTCCAAGTGTTATGATGGGACCAGGGCAGATGCCACTTTCGGACTT]


>consensus_10184#2 TTTTTTTTTTGTACAGTACATTCATATATACAAAAGGCATGACGCCTTACTTGATGCACT GGTGACTGTCAGTGTTACATGAAGACTTAAGAAGGGTTGTTCATCAAGCCATCTAATATT GTGTTAGTGGCAATGGATCTATCTATTGAACAAACATCTATGAGAGACATGCGCATGCAT TCTCCCTGGGCCATATAAACAAACACTTGCCAGGCAGTCCCCACTAACCTGATTTATCAT ATGGAAGCACCTCCAAACCTTTTTACACTTTTGGAAAAGGAAGCTGGTAAGGAAGAACAA CAATCCAAATAGGATGACTATTTACAGTTGGTTAACCTAGTTAATCATTATTGGGAAGCC TCCAAGTGTTATGATGGGACCAGGGCAGATGCCACTTTCGGACTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10184#1      ------------------------------------------------------------
consensus_10184#2      ------------------------------------------------------------
consensus_10184#0      GAGTTTCTCATNCCAAGACAGTTTCCAGTATCAGACTTCCCCAGTGTTTCTCCACGGTAT 60
                                                                                   

consensus_10184#1      ------------------------------------------------------------
consensus_10184#2      ------------------------------------------------------------
consensus_10184#0      GAAAACGCCCAATAGAATCATTTCTATACCAACTGCCCAAAATGCCTTCATTTGAGTTTC 120
                                                                                   

consensus_10184#1      ------------------------------------------------------------
consensus_10184#2      ------------------------------------------------------------
consensus_10184#0      TCCCCAAGACAATTTCAGCAAATGTAAGACTTCCACCAGCATTTTCCCGGTCCTCCAATA 180
                                                                                   

consensus_10184#1      ------------------------------------------------------------
consensus_10184#2      ------------------------------------------------------------
consensus_10184#0      ATAGATCCAGCACATCCAAAGGTCACTGGTTTGTCTGGCGACCCAGACAAAGCCACAAAG 240
                                                                                   

consensus_10184#1      ------------------------------------------------------------
consensus_10184#2      ------------------------------------------------------------
consensus_10184#0      ATAAAACACTCACAGCTTCACATCACTACTTCCATTAAACTATTTACAGACCCAAAGTGC 300
                                                                                   

consensus_10184#1      ------------------------------------------------------------
consensus_10184#2      ------------------------------------------------------------
consensus_10184#0      TTCCGGCCTTCCAATCCTCATCATTCTACCTCAACATCTTCCCATGTAGACATACCTGAT 360
                                                                                   

consensus_10184#1      ------------------------------------------------------------
consensus_10184#2      ------------------------------------------------------------
consensus_10184#0      TCTTCAACTGTTGTGTGGCGCCAAATAAACCCAAGGGCGACCTCAAAACATCTTTGGACG 420
                                                                                   

consensus_10184#1      ---TTTTTTTTTTGGGGCAACTGTGCAAGTACAATTCATATATACAAAAGGACAATGACG 57
consensus_10184#2      ----TTTTTTTTT--------TGTACA-GTACA-TTCATATATACAAAAGGC--ATGACG 44
consensus_10184#0      CATTGCATCAAAGTGGGCAACTGTACAAGTACAATTCATATATACAAAAGGACAATGACG 480
                              *             *** ** ***** *****************   ******

consensus_10184#1      CCCTACCTTGATGCACTGGATGACTGTCCAGTGCTTACAATGAAAGACTTAAAAGAAGGC 117
consensus_10184#2      CCTTAC-TTGATGCACTGG-TGACTGTC-AGTG-TTACAT--GAAGACTTAAGAAGGG-- 96
consensus_10184#0      CCCTACCTTGATGCACTGGATGACTGTCCAGTGCTTACAATGAAAGACTTAAAAGAAGGC 540
                       ** *** ************ ******** **** *****    ********* *   *  

consensus_10184#1      ATTGATTCATCAAGCCAGTGTAATAT-GTGTTAGCTGGACAAAGTGCATCTATCTATTGA 176
consensus_10184#2      --TTGTTCATCAAGCCA-TCTAATATTGTGTTAGT--GGCAA--TGGATCTATCTATTGA 149
consensus_10184#0      ATTGATTCATCAAGCCA-TGTAATATTGTGTTAGCTGGACAAA-TGCATCTATCTATTGA 598
                         *  ************ * ****** *******   * ***  ** *************

consensus_10184#1      AGCAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCCATATAAACAACCACTT 236
consensus_10184#2      ACAAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCC-ATATAAACAAACACTT 208
consensus_10184#0      A-CAACATCTATGAGAGACATGCGCATGCATTCTCCCTGGGCCCATATAAACAACCACTT 657
                       *  **************************************** ********** *****

consensus_10184#1      GCCCAGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACA 296
consensus_10184#2      GCC-AGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACA 267
consensus_10184#0      GCCCAGGCAGTCCCCACTAACCTGATTTATCATATGGAAGCACCTCCAAACCTTTTTACA 717
                       *** ********************************************************

consensus_10184#1      --TTTGGGAAAGGAAGCTGGCTAAGGAGAACAACAATCCAAATAGGATGACTATTTACAG 354
consensus_10184#2      CTTTTGGAAAAGGAAGCTGGTAAGGAAGAACAACAATCCAAATAGGATGACTATTTACAG 327
consensus_10184#0      --TTTGGGAAAGGAAGCTGGCTAAGGAGAACAACAATCCAAATAGGATGACTATTTACAG 775
                         ***** ************  * * **********************************

consensus_10184#1      TTTGGTTAACCTAGTTATTG------GGGAAGCCTCCAAGTGTAATGATGGGACCAGGGC 408
consensus_10184#2      TT-GGTTAACCTAGTTAATCATTATTGGGAAGCCTCCAAGTGTTATGATGGGACCAGGGC 386
consensus_10184#0      TTTGGTTAACCTAGTTATTT------GGGAAGCCTCCAAGTGTAATGATGGGACCAGGGC 829
                       ** ************** *       ***************** ****************

consensus_10184#1      AAGATGCCACTTTCGCGAC-TTCTG-AAGGGAGGCTAATGAACCCTGTTT-GTATCTTAC 465
consensus_10184#2      A-GATGCCACTTTCG-GAC-TT-------------------------------------- 405
consensus_10184#0      AAGATGCCACTTTCGCGACCTTCTGCAAGGGAGGCTAATGAACCCTGTTTTGTATCTT-- 887
                       * ************* *** **                                      

consensus_10184#1      AAACTGAGGTCAGATCAGAGATGTAGATATGCCCAAGAAGCAATGACCAGAAGCTGTGGA 525
consensus_10184#2      ------------------------------------------------------------
consensus_10184#0      ------------------------------------------------------------
                                                                                   

consensus_10184#1      CTTCTATAACACAC 539
consensus_10184#2      --------------
consensus_10184#0      --------------
                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)