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Oryza sativa
cluster # 10206 cluster # 10206       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10206#0 length = 1854 sequences # 5  
consensus_10206#1 length = 693 sequences # 1  
consensus_10206#2 length = 432 sequences # 1  

consensusID : consensus_10206#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1854
fasta sequence
                              [CAGTATAAGCCAAACCAATCCATAGAGGAGGAAGAGGAGGACCAGGTGGTGGCACACCTAAGCTTTGTGCAGTGCCATTCACGCACCTGCAGCTTCCAGCTTTGCCACATGGACCAGCCGGCGCCGGCGCCGGAGCCGATGCTGCTCGACGCGCAGCCGCCCGCCGCCGTCGCCTGCGACAAGAAGCAGCAGGAGGGGGAGGCGCCGTACGCGGAGGGGAATGACGCGGTGACCGGGCACATCATCTCCACCACCATCGGGGGCAAGAACGGCGAGCCCAAGAGGACAATTAGCTACATGGCGGAGCGCGTTGTGGGCACTGGTTCTTTCGGTATCGTCTTTCAGGCTAAATGCTTGGAGACAGGAGAGACTGTTGCCATTAAGAAGGTATTGCAGGACCGACGGTACAAGAACCGTGAGCTTCAGCTTATGCGCGCCATGGACCACCCCAATGTCATCTCCCTGAAGCATTGCTTCTTCTCAACCACAAGTAGGGATGAGCTGTTCCTCAATCTTGTCATGGAATATGTTCCAGAAACACTCTACCGTGTGCTTAAGCACTACAGCAATGCCAACCACCGGATGCCACTTATCTACGTCAAGCTTTACATGTATCAGTTATTTAGGGGGCTTGCGTACA-TTCATACTGTTCCAGGGGTCTGTCATAGGGATGTGAAGCCACAAAATGTTTT-GGTGGAT-CCT-CTAACTCATCAAGTCAAGCTCTGTGACTTTGGGAGCGCAAAAACACTGGTCCCAGGTGAACCCAATATATCATATATATGCTCACGCTACTACCGAGCACCGGAGCTCATATTTGGTGCAACTGAATATACTACATCAATAGATATATGGTCAGCTGGGTGTGTTCTTGCAGAGCTACTCCTTGGTCAGCCATTGTTTCCAGGGGAGAGTGCAGTCGATCAGCTTGTGAGATAATTAAGGTTCTTGGTACACCAACCCGTGAGGAAATACGTTGCATGAACCCGAACTATACAGAGTTTAGGTTTCCACAGATAAAAGCTCACCCTTGGCACAAGGTTTTCCACAAGAGGATGCCTCCTGAAGCAATAGACCTCGCTTCACGCCTTCTTCAATATTCACCGAGTCTCCGCTGCACTGCTCTTGATGCATGTGCACATCCTTTCTTTGATGAGCTGCGAGAGCCGAATGCACGCTTGCCAAACGGACGTCCATTTCCACCACTATTCAACTTCAAACACGAACTAGCAAATTCTTCTCAAGAGCTCATCAGCAGGCTCATACCAGAACATGTTCGACGGCAAGCTACCCACAACTTCTTCAATACTGGGAGCTAAAAATGCTAAATGCACACCACCAGACCTTTTGTTGGATCGTTTTCGCGGAACCGGTGAAGTTCACATGAAGGCTGAGTCAGATGATTCTTCGAATCCCCGCAAAACA-AGAAGAATAGAAAATATGATTCCTCAGATGATGATATGCAAATGCTTCGTTGGAAGTTCAATTCAATCATCGAAGAAGAACAACATTGTAAATCGAGAAGTTTTTGCATCGCGAGTTTGGTAGTGAAACCGGGATCAGCTGGTATGACGGAGGAAA-CCGAAATGTTTAGATCCATGACTGAGTTTTCTTTCAT-TTTTTTT-GCCCAATTGTAACAGA-AGAATATAGTTCCCTAATGTAGGCGTAGTTGTAACCTGTAAACTGCCACTGTTTTGTTCACATTCCAT-GATGTAAATGCCACCATGCCTCTGATGAATAACTCT-CCTTGTAACCTTGTTCCTTCCATCCTTGACTGTTTACCTTAAAGCCGTGGACAGTGTACACTGTACATGTACCGTGCTACACGGAAGGACATATTTGAATTTAAAAAAAAAA]

[+] EMBL AK102147             [CAGTATAAGCCAAACCAATCCATAGAGGAGGAAGAGGAGGACCAGGTGGTGGCACACCTAAGCTTTGTGCAGTGCCATTCACGCACCTGCAGCTTCCAGCTTTGCCACATGGACCAGCCGGCGCCGGCGCCGGAGCCGATGCTGCTCGACGCGCAGCCGCCCGCCGCCGTCGCCTGCGACAAGAAGCAGCAGGAGGGGGAGGCGCCGTACGCGGAGGGGAATGACGCGGTGACCGGGCACATCATCTCCACCACCATCGGGGGCAAGAACGGCGAGCCCAAGAGGACAATTAGCTACATGGCGGAGCGCGTTGTGGGCACTGGTTCTTTCGGTATCGTCTTTCAGGCTAAATGCTTGGAGACAGGAGAGACTGTTGCCATTAAGAAGGTATTGCAGGACCGACGGTACAAGAACCGTGAGCTTCAGCTTATGCGCGCCATGGACCACCCCAATGTCATCTCCCTGAAGCATTGCTTCTTCTCAACCACAAGTAGGGATGAGCTGTTCCTCAATCTTGTCATGGAATATGTTCCAGAAACACTCTACCGTGTGCTTAAGCACTACAGCAATGCCAACCACCGGATGCCACTTATCTACGTCAAGCTTTACATGTATCAGTTATTTAGGGGGCTTGCGTACA TTCATACTGTTCCAGGGGTCTGTCATAGGGATGTGAAGCCACAAAATGTTTT GGTGGAT CCT CTAACTCATCAAGTCAAGCTCTGTGACTTTGGGAGCGCAAAAACACTGGTCCCAGGTGAACCCAATATATCATATATATGCTCACGCTACTACCGAGCACCGGAGCTCATATTTGGTGCAACTGAATATACTACATCAATAGATATATGGTCAGCTGGGTGTGTTCTTGCAGAGCTACTCCTTGGTCAGCCATTGTTTCCAGGGGAGAGTGCAGTCGATCAGCTTGTGAGATAATTAAGGTTCTTGGTACACCAACCCGTGAGGAAATACGTTGCATGAACCCGAACTATACAGAGTTTAGGTTTCCACAGATAAAAGCTCACCCTTGGCACAAGGTTTTCCACAAGAGGATGCCTCCTGAAGCAATAGACCTCGCTTCACGCCTTCTTCAATATTCACCGAGTCTCCGCTGCACTGCTCTTGATGCATGTGCACATCCTTTCTTTGATGAGCTGCGAGAGCCGAATGCACGCTTGCCAAACGGACGTCCATTTCCACCACTATTCAACTTCAAACACGAACTAGCAAATTCTTCTCAAGAGCTCATCAGCAGGCTCATACCAGAACATGTTCGACGGCAAGCTACCCACAACTTCTTCAATACTGGGAGCTAAAAATGCTAAATGCACACCACCAGACCTTTTGTTGGATCGTTTTCGCGGAACCGGTGAAGTTCACATGAAGGCTGAGTCAGATGATTCTTCGAATCCCCGCAAAACA AGAAGAATAGAAAATATGATTCCTCAGATGATGATATGCAAATGCTTCGTTGGAAGTTCAATTCAATCATCGAAGAAGAACAACATTGTAAATCGAGAAGTTTTTGCATCGCGAGTTTGGTAGTGAAACCGGGATCAGCTGGTATGACGGAGGAAA CCGAAATGTTTAGATCCATGACTGAGTTTTCTTTCAT TTTTTTT GCCCAATTGTAACAGA AGAATATAGTTCCCTAATGTAGGCGTAGTTGTAACCTGTAAACTGCCACTGTTTTGTTCACATTCCAT GATGTAAATGCCACCATGCCTCTGATGAATAACTCT CCTTGTAACCTTGTTCCTTCCATCCTTGACTGTTTACCTTAAAGCCGTGGACAGTGTACACTGTACATGTACCGTGCTACACGGAAGGACATATTTGAATTT          ]
[+] EMBL CB639568             [                AATCCATAGAGGAGGAAGAGGAGGACCAGGTGGTGGCACACCTAAGCTTTGTGCAGTGCCATTCACGCACCTGCAGCTTCCAGCTTTGCCACATGGACCAGCCGGCGCCGGCGCCGGAGCCGATGCTGCTCGACGCGCAGCCGCCCGCCGCCGTCGCCTGCGACAAGAAGCAGCAGGAGGGGGAGGCGCCGTACGCGGAGGGGAATGACGCGGTGACCGGGCACATCATCTCCACCACCATCGGGGGCAAGAACGGCGAGCCCAAGAGGACAATTAGCTACATGGCGGAGCGCGTTGTGGGCACTGGTTCTTTCTGTATCGTCTTTCACGCTAAATGCTTGGAGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AF076814             [                                                                                                                                                                                                                                                                                                                                                                                                                                TGAGCTTCAGCTTATGCGCGCCATGGACCACCCCAATGTCATCTCCCTGAAGCATTGCTTCTTCTCAACCACAAGTAGGGATGAGCTGTTCCTCAATCTTGTCATGGAATATGTTCCAGAAACACTCTACCGTGTGCTTAAGCACTACAGCAATGCCAACCACCGGATGCCACTTATCTACGTCAAGCTTTACATGTATCAATTATTTAGGGGGCTTGCGTACATTTCATACTGTACCAGGGGTCTGTCATAGGGATGTGAAACCACAAAATGTTTTGGGTGGATCCCTCCTAAac                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BQ908055             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AACATGTTCAACGGCAAGCGGCCCACAACTTCTTCAATACTAGGAGCTAAAAATGCTAAATGCACACCACCAGACCTTTTGTTGGATCGTTTTCGCGGAACCGGTGAAGTTCACATGAAGGCTGAGTCAGATGATTCTTCGAATCCCCGC AAACATAGAAGAATAGAAAATATGATTCCTCAGATGATGATATGCAAATGCTTTGTTGGAAGTTCAATTCAATCATCGAAGAAGAACAACATTGTAAATCGAGAAGTTTTTGCATCGCGAGTTTGGTAGTGAAACCGGGATCAGCTGGTATGACGGAGGAAACCCGAAATGTTTAGATCCATGACTGAGTTTTCTTTCATGTTTTTTTGGCCCAATTGTAACAGATAGAATATAGTTCCCTAATGTAGGCGTAGTTGTAACCTGTAAACTGCCACTGTTTTGTTCACATTCCATGGATGTAAATGCCACCATGCCTCTGATGAATAACTCT CGTTGTAACCTTGTTCCTTCCATCCTTGACTGTTTACCTTAAAGCCGTGGACAGTGTACACTGTACATGTACCGTGCTACACGGAAGGACATATTTGAATTTAAAAAAAAAA]
[-] EMBL CB636026             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATGCACACCACCAGACTTTTTGTTGGATCGTTTTCGCGGAACCGGTGAAGTTCACATGAAGGTTGAGTCAGATGATTCTTCGAATCCCCGCAAAACA AGAAGAATAGAAAATATGATTCCTCAGATGATGATATGCAAATGCTTCGTTGGAAGTTCAATTCAATCATGGAAGAAGAACAACATTGTAAATCGAGAAGTTTTTGCATCGCGAGTTTGGTAGTGAAACCGGGATCAGCTGGTATGACGGAGGAAA CCGAAATGTTTAGATCCATGACTGAGTTTTCTTTCAT TTTTTTT GCCCAATTGTAACAGA AGAATATAGTTCCCTAATGTAGGCGTAGTTGTAACCTGTAAACTGCCACTGTTTTGTTCACATTCCAT GATGTAAATGCCACCATGCCTATGATGAATAACTTTCCCTTGTAACCTTGTTCCTTCCATCCTTGACTGTTTACCTTAAAGCCG GGACAGTGTACACTGTACATGTACCGTGTTAC                                ]


>consensus_10206#0 CAGTATAAGCCAAACCAATCCATAGAGGAGGAAGAGGAGGACCAGGTGGTGGCACACCTA AGCTTTGTGCAGTGCCATTCACGCACCTGCAGCTTCCAGCTTTGCCACATGGACCAGCCG GCGCCGGCGCCGGAGCCGATGCTGCTCGACGCGCAGCCGCCCGCCGCCGTCGCCTGCGAC AAGAAGCAGCAGGAGGGGGAGGCGCCGTACGCGGAGGGGAATGACGCGGTGACCGGGCAC ATCATCTCCACCACCATCGGGGGCAAGAACGGCGAGCCCAAGAGGACAATTAGCTACATG GCGGAGCGCGTTGTGGGCACTGGTTCTTTCGGTATCGTCTTTCAGGCTAAATGCTTGGAG ACAGGAGAGACTGTTGCCATTAAGAAGGTATTGCAGGACCGACGGTACAAGAACCGTGAG CTTCAGCTTATGCGCGCCATGGACCACCCCAATGTCATCTCCCTGAAGCATTGCTTCTTC TCAACCACAAGTAGGGATGAGCTGTTCCTCAATCTTGTCATGGAATATGTTCCAGAAACA CTCTACCGTGTGCTTAAGCACTACAGCAATGCCAACCACCGGATGCCACTTATCTACGTC AAGCTTTACATGTATCAGTTATTTAGGGGGCTTGCGTACATTCATACTGTTCCAGGGGTC TGTCATAGGGATGTGAAGCCACAAAATGTTTTGGTGGATCCTCTAACTCATCAAGTCAAG CTCTGTGACTTTGGGAGCGCAAAAACACTGGTCCCAGGTGAACCCAATATATCATATATA TGCTCACGCTACTACCGAGCACCGGAGCTCATATTTGGTGCAACTGAATATACTACATCA ATAGATATATGGTCAGCTGGGTGTGTTCTTGCAGAGCTACTCCTTGGTCAGCCATTGTTT CCAGGGGAGAGTGCAGTCGATCAGCTTGTGAGATAATTAAGGTTCTTGGTACACCAACCC GTGAGGAAATACGTTGCATGAACCCGAACTATACAGAGTTTAGGTTTCCACAGATAAAAG CTCACCCTTGGCACAAGGTTTTCCACAAGAGGATGCCTCCTGAAGCAATAGACCTCGCTT CACGCCTTCTTCAATATTCACCGAGTCTCCGCTGCACTGCTCTTGATGCATGTGCACATC CTTTCTTTGATGAGCTGCGAGAGCCGAATGCACGCTTGCCAAACGGACGTCCATTTCCAC CACTATTCAACTTCAAACACGAACTAGCAAATTCTTCTCAAGAGCTCATCAGCAGGCTCA TACCAGAACATGTTCGACGGCAAGCTACCCACAACTTCTTCAATACTGGGAGCTAAAAAT GCTAAATGCACACCACCAGACCTTTTGTTGGATCGTTTTCGCGGAACCGGTGAAGTTCAC ATGAAGGCTGAGTCAGATGATTCTTCGAATCCCCGCAAAACAAGAAGAATAGAAAATATG ATTCCTCAGATGATGATATGCAAATGCTTCGTTGGAAGTTCAATTCAATCATCGAAGAAG AACAACATTGTAAATCGAGAAGTTTTTGCATCGCGAGTTTGGTAGTGAAACCGGGATCAG CTGGTATGACGGAGGAAACCGAAATGTTTAGATCCATGACTGAGTTTTCTTTCATTTTTT TTGCCCAATTGTAACAGAAGAATATAGTTCCCTAATGTAGGCGTAGTTGTAACCTGTAAA CTGCCACTGTTTTGTTCACATTCCATGATGTAAATGCCACCATGCCTCTGATGAATAACT CTCCTTGTAACCTTGTTCCTTCCATCCTTGACTGTTTACCTTAAAGCCGTGGACAGTGTA CACTGTACATGTACCGTGCTACACGGAAGGACATATTTGAATTTAAAAAAAAAA



consensusID : consensus_10206#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 693
fasta sequence
                              [CCTTCTTCAATATTCACCGAGTTTCCGCTGCACTGCTCTTGATGCATGTGCACATCCTTTCTNTGATGAGCTGCGAGAGCCGAATGCACGCTTGCCAAACGGACGTCCATTTCCACCACTATTCAACTTCAAACACGAACTAGCAAATTCTTCTCAAGAGCTCATCAGCAGGCTCATACCAGAACATGTTTGACGGCAAGCTACCCACAACTTTTTCAATACTGGGAGCTAAAAATGCTAAATGCACACCACCAGACCTTTTGTTGGATCGTTTTCGCGGAACCGGTGAAGTTCACATGAAGGCTGAGTCAGATGATTTTTCGAATCCCCGCAAAACAAGAAGAATAGAAGATATGATTCCTCAGATGATGATATGCAAATGCTTCGTTGGAAGTTTAATTCAATCATCGAAGAAGAACAACATTGTAAATCGAGAAGTTTTTGCATCGCGAGTTTGGTAGTGAAACCGGGATCAGCTGGTATGACGGGGGAAACCGAAATGTTTAGATCCATGACTGAGTTTTCTTTCATTTTTTTTGCCCAATTGTAACAGAAGAATATAGTTCCCTAAAGTAGGGGTAGTTGTAACCTGTAAACTGCCACTGTTTTGTTCACATTCCATGATGTAAATGCCCCCATGCCTTTGATGAATAACTCTCCTTGTAACCTTGTTCCTTCAAAAAAAAAAAAAAA]

[-] EMBL CA759931             [CCTTCTTCAATATTCACCGAGTTTCCGCTGCACTGCTCTTGATGCATGTGCACATCCTTTCTNTGATGAGCTGCGAGAGCCGAATGCACGCTTGCCAAACGGACGTCCATTTCCACCACTATTCAACTTCAAACACGAACTAGCAAATTCTTCTCAAGAGCTCATCAGCAGGCTCATACCAGAACATGTTTGACGGCAAGCTACCCACAACTTTTTCAATACTGGGAGCTAAAAATGCTAAATGCACACCACCAGACCTTTTGTTGGATCGTTTTCGCGGAACCGGTGAAGTTCACATGAAGGCTGAGTCAGATGATTTTTCGAATCCCCGCAAAACAAGAAGAATAGAAGATATGATTCCTCAGATGATGATATGCAAATGCTTCGTTGGAAGTTTAATTCAATCATCGAAGAAGAACAACATTGTAAATCGAGAAGTTTTTGCATCGCGAGTTTGGTAGTGAAACCGGGATCAGCTGGTATGACGGGGGAAACCGAAATGTTTAGATCCATGACTGAGTTTTCTTTCATTTTTTTTGCCCAATTGTAACAGAAGAATATAGTTCCCTAAAGTAGGGGTAGTTGTAACCTGTAAACTGCCACTGTTTTGTTCACATTCCATGATGTAAATGCCCCCATGCCTTTGATGAATAACTCTCCTTGTAACCTTGTTCCTTCAAAAAAAAAAAAAAA]


>consensus_10206#1 CCTTCTTCAATATTCACCGAGTTTCCGCTGCACTGCTCTTGATGCATGTGCACATCCTTT CTNTGATGAGCTGCGAGAGCCGAATGCACGCTTGCCAAACGGACGTCCATTTCCACCACT ATTCAACTTCAAACACGAACTAGCAAATTCTTCTCAAGAGCTCATCAGCAGGCTCATACC AGAACATGTTTGACGGCAAGCTACCCACAACTTTTTCAATACTGGGAGCTAAAAATGCTA AATGCACACCACCAGACCTTTTGTTGGATCGTTTTCGCGGAACCGGTGAAGTTCACATGA AGGCTGAGTCAGATGATTTTTCGAATCCCCGCAAAACAAGAAGAATAGAAGATATGATTC CTCAGATGATGATATGCAAATGCTTCGTTGGAAGTTTAATTCAATCATCGAAGAAGAACA ACATTGTAAATCGAGAAGTTTTTGCATCGCGAGTTTGGTAGTGAAACCGGGATCAGCTGG TATGACGGGGGAAACCGAAATGTTTAGATCCATGACTGAGTTTTCTTTCATTTTTTTTGC CCAATTGTAACAGAAGAATATAGTTCCCTAAAGTAGGGGTAGTTGTAACCTGTAAACTGC CACTGTTTTGTTCACATTCCATGATGTAAATGCCCCCATGCCTTTGATGAATAACTCTCC TTGTAACCTTGTTCCTTCAAAAAAAAAAAAAAA



consensusID : consensus_10206#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence
                              [ATCATGGAATGTGAACAAAACAGTGGCAGTTTACAGGTTACAACTACGCCTACATTAGGGAACTATATTCTTCTGTTACAATTGGGCAAAAAAAATGAAAGAAAACTCAGTCATGGATCTAAACATTTCGGTTTCCTCCGTCATACCAGTCGATCAGCTTGTAGAGATAATTAAGGTTCTTGGTACACCAACCCGTGAGGAAATACGTTGCATGAACCCGAACTATACAGAGTTTAGGTTTCCACAGATAAAAGCTCACCCTTGGCACAAGGTTTTCCACAAGAGGATGCCTCCTGAAGCAATAGACCTCGCTTCACGCCTTCTTCAATATTCACCGAGTCTCCGCTGCACTGCTCTTGATGCATGTGCACATCCTTTCTTTGATGAGCTGCGAGAGCCGAATGCACGCTTGCCAAACGGACGTCCATTTCC]

[+] EMBL AU183240             [ATCATGGAATGTGAACAAAACAGTGGCAGTTTACAGGTTACAACTACGCCTACATTAGGGAACTATATTCTTCTGTTACAATTGGGCAAAAAAAATGAAAGAAAACTCAGTCATGGATCTAAACATTTCGGTTTCCTCCGTCATACCAGTCGATCAGCTTGTAGAGATAATTAAGGTTCTTGGTACACCAACCCGTGAGGAAATACGTTGCATGAACCCGAACTATACAGAGTTTAGGTTTCCACAGATAAAAGCTCACCCTTGGCACAAGGTTTTCCACAAGAGGATGCCTCCTGAAGCAATAGACCTCGCTTCACGCCTTCTTCAATATTCACCGAGTCTCCGCTGCACTGCTCTTGATGCATGTGCACATCCTTTCTTTGATGAGCTGCGAGAGCCGAATGCACGCTTGCCAAACGGACGTCCATTTCC]


>consensus_10206#2 ATCATGGAATGTGAACAAAACAGTGGCAGTTTACAGGTTACAACTACGCCTACATTAGGG AACTATATTCTTCTGTTACAATTGGGCAAAAAAAATGAAAGAAAACTCAGTCATGGATCT AAACATTTCGGTTTCCTCCGTCATACCAGTCGATCAGCTTGTAGAGATAATTAAGGTTCT TGGTACACCAACCCGTGAGGAAATACGTTGCATGAACCCGAACTATACAGAGTTTAGGTT TCCACAGATAAAAGCTCACCCTTGGCACAAGGTTTTCCACAAGAGGATGCCTCCTGAAGC AATAGACCTCGCTTCACGCCTTCTTCAATATTCACCGAGTCTCCGCTGCACTGCTCTTGA TGCATGTGCACATCCTTTCTTTGATGAGCTGCGAGAGCCGAATGCACGCTTGCCAAACGG ACGTCCATTTCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10206#0      CAGTATAAGCCAAACCAATCCATAGAGGAGGAAGAGGAGGACCAGGTGGTGGCACACCTA 60
consensus_10206#1      ------------------------------------------------------------
consensus_10206#2      ------------------------------------------------------------
                                                                                   

consensus_10206#0      AGCTTTGTGCAGTGCCATTCACGCACCTGCAGCTTCCAGCTTTGCCACATGGACCAGCCG 120
consensus_10206#1      ------------------------------------------------------------
consensus_10206#2      ------------------------------------------------------------
                                                                                   

consensus_10206#0      GCGCCGGCGCCGGAGCCGATGCTGCTCGACGCGCAGCCGCCCGCCGCCGTCGCCTGCGAC 180
consensus_10206#1      ------------------------------------------------------------
consensus_10206#2      ------------------------------------------------------------
                                                                                   

consensus_10206#0      AAGAAGCAGCAGGAGGGGGAGGCGCCGTACGCGGAGGGGAATGACGCGGTGACCGGGCAC 240
consensus_10206#1      ------------------------------------------------------------
consensus_10206#2      ------------------------------------------------------------
                                                                                   

consensus_10206#0      ATCATCTCCACCACCATCGGGGGCAAGAACGGCGAGCCCAAGAGGACAATTAGCTACATG 300
consensus_10206#1      ------------------------------------------------------------
consensus_10206#2      ------------------------------------------------------------
                                                                                   

consensus_10206#0      GCGGAGCGCGTTGTGGGCACTGGTTCTTTCGGTATCGTCTTTCAGGCTAAATGCTTGGAG 360
consensus_10206#1      ------------------------------------------------------------
consensus_10206#2      ------------------------------------------------------------
                                                                                   

consensus_10206#0      ACAGGAGAGACTGTTGCCATTAAGAAGGTATTGCAGGACCGACGGTACAAGAACCGTGAG 420
consensus_10206#1      ------------------------------------------------------------
consensus_10206#2      ------------------------------------------------------------
                                                                                   

consensus_10206#0      CTTCAGCTTATGCGCGCCATGGACCACCCCAATGTCATCTCCCTGAAGCATTGCTTCTTC 480
consensus_10206#1      ------------------------------------------------------------
consensus_10206#2      ------------------------------------------------------------
                                                                                   

consensus_10206#0      TCAACCACAAGTAGGGATGAGCTGTTCCTCAATCTTGTCATGGAATATGTTCCAGAAACA 540
consensus_10206#1      ------------------------------------------------------------
consensus_10206#2      ------------------------------------------------------------
                                                                                   

consensus_10206#0      CTCTACCGTGTGCTTAAGCACTACAGCAATGCCAACCACCGGATGCCACTTATCTACGTC 600
consensus_10206#1      ------------------------------------------------------------
consensus_10206#2      ------------------------------------------------------------
                                                                                   

consensus_10206#0      AAGCTTTACATGTATCAGTTATTTAGGGGGCTTGCGTACATTCATACTGTTCCAGGGGTC 660
consensus_10206#1      ------------------------------------------------------------
consensus_10206#2      ------------------------------------------------------------
                                                                                   

consensus_10206#0      TGTCATAGGGATGTGAAGCCACAAAATGTTTTGGTGGATCCTCTAACTCATCAAGTCAAG 720
consensus_10206#1      ------------------------------------------------------------
consensus_10206#2      ------------------------------------------------------------
                                                                                   

consensus_10206#0      CTCTGTGACTTTGGGAGCGCAAAAACACTGGTCCCAGGTGAACCCAATATATCATATATA 780
consensus_10206#1      ------------------------------------------------------------
consensus_10206#2      ------------------------------------------------------------
                                                                                   

consensus_10206#0      TGCTCACGCTACTACCGAGCACCGGAGCTCATATTTGGTGCAACTGAATATACTACATCA 840
consensus_10206#1      ------------------------------------------------------------
consensus_10206#2      ------------------------------------------------------------
                                                                                   

consensus_10206#0      ATAGATATATGGTCAGCTGGGTGTGTTCTTGCAGAGCTACTCCTTGGTCAGCCATTGTTT 900
consensus_10206#1      ------------------------------------------------------------
consensus_10206#2      ------------------------------------------------------------
                                                                                   

consensus_10206#0      CCAGGGGAGAGTGCAGTCGATCAGCTTGTGAGATAATTAAGGTTCTTGGTACACCAACCC 960
consensus_10206#1      ------------------------------------------------------------
consensus_10206#2      ------------------------------------------------------------
                                                                                   

consensus_10206#0      GTGAGGAAATACGTTGCATGAACCCGAACTATACAGAGTTTAGGTTTCCACAGATAAAAG 1020
consensus_10206#1      ------------------------------------------------------------
consensus_10206#2      ------------------------------------------------------------
                                                                                   

consensus_10206#0      CTCACCCTTGGCACAAGGTTTTCCACAAGAGGATGCCTCCTGAAGCAATAGACCTCGCTT 1080
consensus_10206#1      ------------------------------------------------------------
consensus_10206#2      ------------------------------------------------------------
                                                                                   

consensus_10206#0      CACGCCTTCTTCAATATTCACCGAGTCTCCGCTGCACTGCTCTTGATGCATGTGCACATC 1140
consensus_10206#1      ----CCTTCTTCAATATTCACCGAGTTTCCGCTGCACTGCTCTTGATGCATGTGCACATC 56
consensus_10206#2      -----------------------------------------ATCATGGAATGTGAACAAA 19
                                                                 *    * ***** ***  

consensus_10206#0      CTTTCTTTGATGAGCTGCGAGAGCCGAATGCACGCTTGCCAAACGGACGTCCATTTCCAC 1200
consensus_10206#1      CTTTCTNTGATGAGCTGCGAGAGCCGAATGCACGCTTGCCAAACGGACGTCCATTTCCAC 116
consensus_10206#2      ---ACAGTGGCAGTTTACAGGTTACAACTACGCCTACATTAGGGAACTATATTCTTCTGT 76
                           *  **      * *  *   * * * * *       *        *    ***   

consensus_10206#0      CACTATTCAACTTCAAACACGAACTAGCAAATTCTTCTCAAGAGCTCATCAGCAGGCTCA 1260
consensus_10206#1      CACTATTCAACTTCAAACACGAACTAGCAAATTCTTCTCAAGAGCTCATCAGCAGGCTCA 176
consensus_10206#2      TACAATTGGGCAAAAAAAATGAA--AGAAAACTCAGTCATGGATCTAAACATTTCGGTTT 134
                        ** ***   *   *** * ***  ** *** **       ** ** * **    * *  

consensus_10206#0      TACCAGAACATGTTCGACGGCAAGCTACCCACAACTTCTTCAATACTGGGAGCTAAAAAT 1320
consensus_10206#1      TACCAGAACATGTTTGACGGCAAGCTACCCACAACTTTTTCAATACTGGGAGCTAAAAAT 236
consensus_10206#2      CCTCCGT-CATACCAGTCGATCAGCTT---------------GTAGAGATAATTAAGGTT 178
                          * *  ***    * **   ****                 **  *  *  ***   *

consensus_10206#0      GCTAAATGCACACCACCAGACCTTTTGTTGGATCGTTTTCGCGGAACCGGTGAAGTTCAC 1380
consensus_10206#1      GCTAAATGCACACCACCAGACCTTTTGTTGGATCGTTTTCGCGGAACCGGTGAAGTTCAC 296
consensus_10206#2      CTTG---GTACACCA----ACCCGTGAGGAAATACGTTGCATGAACCCGAACTATACAGA 231
                         *    * ******    ***  *      **   ** *  * * ***    *      

consensus_10206#0      ATGAAGGCTGAGTCAGATGATTCTTCGAATCCCCGCAAAACAAGAAGAATAGAAAATATG 1440
consensus_10206#1      ATGAAGGCTGAGTCAGATGATTTTTCGAATCCCCGCAAAACAAGAAGAATAGAAGATATG 356
consensus_10206#2      GTTTAGGTTTCCACAGATAAAAGCTC-ACCCTTGGCACAAGGTTTTCCACAAGAGG-ATG 289
                        *  *** *    ***** *    ** *  *   *** **        * *  *   ***

consensus_10206#0      ATTCCTCAGATGATGATATGCAAATGCTTCGTTGGAAGTTCAATTCAATCATCGAAGAAG 1500
consensus_10206#1      ATTCCTCAGATGATGATATGCAAATGCTTCGTTGGAAGTTTAATTCAATCATCGAAGAAG 416
consensus_10206#2      CCTCCTGAAGCAATAG---------ACCTCGCTTCACGCCTTCTTCAATATTCACCGAGT 340
                         **** *    **            * *** *  * *     ******  **   **  

consensus_10206#0      AACAACATTGTAAATCGAGAAGTTTTTGCATCGCGAGTTTGGTAGTGAAAC-CGGGATCA 1559
consensus_10206#1      AACAACATTGTAAATCGAGAAGTTTTTGCATCGCGAGTTTGGTAGTGAAAC-CGGGATCA 475
consensus_10206#2      CTCCGCTGCACTGCTCTTGATGCATGTGCA-CATCCTTTCTTTGATGAGCTGCGAGAGCC 399
                         *  *        **  ** *  * **** *     **   *  ***    ** ** * 

consensus_10206#0      GCTGGTATGACGGAGGAAACCGAAATGTTTAGATCCATGACTGAGTTTTCTTTCATTTTT 1619
consensus_10206#1      GCTGGTATGACGGGGGAAACCGAAATGTTTAGATCCATGACTGAGTTTTCTTTCATTTTT 535
consensus_10206#2      GAATGCACG-CTTGCCAAACGG--ACGTCCATTTCC------------------------ 432
                       *   * * * *     **** *  * **  *  ***                        

consensus_10206#0      TTTGCCCAATTGTAACAGAAGAATATAGTTCCCTAATGTAGGCGTAGTTGTAACCTGTAA 1679
consensus_10206#1      TTTGCCCAATTGTAACAGAAGAATATAGTTCCCTAAAGTAGGGGTAGTTGTAACCTGTAA 595
consensus_10206#2      ------------------------------------------------------------
                                                                                   

consensus_10206#0      ACTGCCACTGTTTTGTTCACATTCCATGATGTAAATGCCACCATGCCTCTGATGAATAAC 1739
consensus_10206#1      ACTGCCACTGTTTTGTTCACATTCCATGATGTAAATGCCCCCATGCCTTTGATGAATAAC 655
consensus_10206#2      ------------------------------------------------------------
                                                                                   

consensus_10206#0      TCTCCTTGTAACCTTGTTCCTTCCATCCTTGACTGTTTACCTTAAAGCCGTGGACAGTGT 1799
consensus_10206#1      TCTCCTTGTAACCTTGTTCCTTCAAAAAAAAAAAAAAA---------------------- 693
consensus_10206#2      ------------------------------------------------------------
                                                                                   

consensus_10206#0      ACACTGTACATGTACCGTGCTACACGGAAGGACATATTTGAATTTAAAAAAAAAA 1854
consensus_10206#1      -------------------------------------------------------
consensus_10206#2      -------------------------------------------------------
                                                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)