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Oryza sativa
cluster # 10220 cluster # 10220       Sequences # 7       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10220#0 length = 1036 sequences # 7  

consensusID : consensus_10220#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1036
fasta sequence
                              [AAAAAAAAAACTCTCCCGAGCTCTCCTCGCCGCCGCCGCCATGTCCGGGTTCGCGCGGCGCCTCGGCGGGATCCCGTGGAGGGAGATCGCCGGGGAAGCCTTCTCCCGCGTCTTCCTCGTCGCGCAGGCCGTCTGCGCCGTCCACGTCGTCAACGCCCACGTCTGCTCCTTCGCGCTGGTGATGGGCCCGAGCATGCTGCCGGCGATGAACCTGGCGGGGGACGTGGTGGCGGTGGACCTGGTGAGCGCGCGGCTCGGGCGGGTGGCGAGCGGCGACGCCGTGCTCCTCGTCTCGCCGGAGAACCCGCGCAAGGCGGTCGTCAAGCGCGTCGTCGGGATGGAGGGCGACGCCGTCACGTTCCTCGTCGACCCCGGCAACAGCGACGCCTCCAAGACCGTCGTGGTACCAAAAGGCCATGTCTGGGTGCAGGGTGATAATATTTATGCTTCTAG-AGATTCAAGACAGTTTGGACCTGTCCCTTATGGTCTAATTACAGGGAAGATCTTTTGTCGGGTTTGGCCACTGAAGGATTTTGGTCCGATAGATCCAATGTCAGCTGAGTAGGGGTAACTCAGCCTTA-TTTTTCTTCTTCACTTATTTTCAGAATCCAGGCCTCTCGCTCTACCTTTATCTCTCCGAGCCGACCTTTTTTTACCCGTTTGCTCCAGAATTTATCGAAGACGGCATGCATATCTTGAGATTTTTATGATCAGGCAACAAGGCCCTACATTCTGGTTCATGGTGTCTGCCATGGCACATTTTACAGCAAAACCGAGAGCATCAAAGTTTATTGCTCAGTTTTTTAACATGAGAATTTTGGCCATAGTCCTCAAGGGAATCCCAAGTTCTCAACCATGCTCTTGTATAAATTGAACA-GTGTAACTTTGGTGTACGAAATTTTTAGAACATTATTGAGATAGACCAAAATTTGTAGAACGCTGTTGATTAATTAATCGAAGTCGCCATGTATCA-GAGTTGTTATCGGACAGTGGTAAACGCTTACCGGTTTAATAAGTAGAAACAAAATTCTTGTTT]

[+] EMBL AK106677             [AAAAAAAAAACTCTCCCGAGCTCTCCTCGCCGCCGCCGCCATGTCCGGGTTCGCGCGGCGCCTCGGCGGGATCCCGTGGAGGGAGATCGCCGGGGAAGCCTTCTCCCGCGTCTTCCTCGTCGCGCAGGCCGTCTGCGCCGTCCACGTCGTCAACGCCCACGTCTGCTCCTTCGCGCTGGTGATGGGCCCGAGCATGCTGCCGGCGATGAACCTGGCGGGGGACGTGGTGGCGGTGGACCTGGTGAGCGCGCGGCTCGGGCGGGTGGCGAGCGGCGACGCCGTGCTCCTCGTCTCGCCGGAGAACCCGCGCAAGGCGGTCGTCAAGCGCGTCGTCGGGATGGAGGGCGACGCCGTCACGTTCCTCGTCGACCCCGGCAACAGCGACGCCTCCAAGACCGTCGTGGTACCAAAAGGCCATGTCTGGGTGCAGGGTGATAATATTTATGCTTCTAG AGATTCAAGACAGTTTGGACCTGTCCCTTATGGTCTAATTACAGGGAAGATCTTTTGTCGGGTTTGGCCACTGAAGGATTTTGGTCCGATAGATCCAATGTCAGCTGAGTAGGGGTAACTCAGCCTTA TTTTTCTTCTTCACTTATTTTCAGAATCCAGGCCTCTCGCTCTACCTTTATCTCTCCGAGCCGACCTTTTTTTACCCGTTTGCTCCAGAATTTATCGAAGACGGCATGCATATCTTGAGATTTTTATGATCAGGCAACAAGGCCCTACATTCTGGTTCATGGTGTCTGCCATGGCACATTTTACAGCAAAACCGAGAGCATCAAAGTTTATTGCTCAGTTTTTTAACATGAGAATTTTGGCCATAGTCCTCAAGGGAATCCCAAGTTCTCAACCATGCTCTTGTATAAATTGAACA GTGTAACTTTGGTGTACGAAATTTTTAGAACATTATTGAGATAGACCAAAATTTGTAGAACGCTGTTGATTAATTAATCGAAGTCGCCATGTATCA GAGTTGTTATCGGACAGTGGTAAACGCTTACCGGTTTAATAAGTAGAAACAAAATTCTTGTTT]
[-] EMBL CA305680             [                                                                                                                                                                                                                                                                                                                                                                                                                                          GCAGGGTGATAATATTTATGCTTCTAGAAGATTCAAGACAGTTTGGACCTGTCCCTTATGGTCTAATTACAGGGAAGATCTTTTGTCGGGTTTGGCCACTGAAGGATTTTGGTCCGATAGATCCAATGTCAGCTGAGTAGGGGTAACTCAGCCTTA TTTTTCTTCTTCACTTATTTTCAGAATCCAGGCCTCTCGCTCTACCTTTATCTCTCCGAGCCGACCTTTTTTTACCCGTTTGCTCCAGAATTTATCGAAGACGGCATGCATATCTTGAGATTTTTATGATCAGGCAACAAGGCCCTACATTCTGGTTCATGGTGTCTGCCATGGCACATTTTACAGCAAAACCGAGAGCATCAAAGTTTATTGCTCAGTTTTTTAACATGAGAATTTTGGCCATAGTCCTCAAGGGAATCCCAAGTTCTCAACCATGCTCTTGTATAAATTGAACA GTG                                                                                                                                                             ]
[-] EMBL CA305694             [                                                                                                                                                                                                                                                                                                                                                                                                                                             GGGTGATAATATTTATGCTTCTAG AGATTCAAGACAGTTTGGACCTGTCCCTTATGGTCTAATTACAGGGAAGATCTTTTGTCGGGTTTGGCCACTGAAGGATTTTGGTCCGATAGATCCAATGTCAGCTGAGTAGGGGTAACTCAGCCTTA TTTTTCTTCTTCACTTATTTTCAGAATCCAGGCCTCTCGCTCTACCTTTATCTCTCCGAGCCGACCTTTTTTTACCCGTTTGCTCCAGAATTTATCGAAGACGGCATGCATATCTTGAGATTTTTATGATCAGGCAACAAGGCCCTACATTCTGGTTCATGGTGTCTGCCATGGCACATTTTACAGCAAAACCGAGAGCATCAAAGTTTATTGCTCAGTTTTTTAACATGAGAATTTTGGCCATAGTCCTCAAGGGAATCCCAAGTTCTCAACCATGCTCTTGTATAAATTGAACA                                                                                                                                                                 ]
[-] EMBL CA305665             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GGTAACTCAGCCTTATTTTTTCTT NTCACTTATTTTCAGAATNCAGGCCTCTCGCTCTACCTTTATCTCTCCGAGCCGACCTTTTTTTACCCGTTTGCTCCAGAATTTATCGAAGACGGCATGCATATCTTGAGATTTTTATGATCAGGCAACAAGGCCCTACATTCTGGTTCATGGTGTCTGCCATGGCACATTTTACAGCAAAACCGAGAGCATCAAAGTTTATTGCTCAGTTTTTTAACATGAGAATTTTGGCCATAGTCCTCAAGGGAATCCCAAGTTCTCAACCATGCTCTTGTATAAATTGAACA GT                                                                                                                                                              ]
[-] EMBL CA305723             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CTTCCCTTATTTTCAGAATCCAGGCCTCTCGCTCTACCTTTATCTNTCCGAGCCNNCCTTTTTTTNCCCGTTTGCTCCAGAATTTATCGAANNCGGCATGCATATCTTGANATTTTTATGATCAGGCAACAAGGCCCTACATTCTGGTTCATGGTGTCTGCCATGGCACATTTTACAGCAAAACCGAGAGCATCAAAGTTTANANATCAG TTTTTAACATGAGAATTTTGGCCATAGTCCTCAAGGGAATCCCAAGTTCTCAACCATGCTCTTGTATAAATTGAACAGGTGTAACTT                                                                                                                                                       ]
[+] EMBL BI796189             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ATGCATATCTTGAGATTTTTATGATCAGGCAACAAGGCCCTACATTCTGGTTCATGGTGTCTGCCATGGCACATTTTACAGC AAACCGAGAGCATCAAAGTTTATTGCTCAGTTTTTTAACATGAGAATTTTGGCCATAGTCCTCAAGGGAATCCCAAGTTCTCAACCATGCTCTTGTATAAATTGAACA GTGTAACTTTGGTGTACGAAATTTTTAGAACATTATTGAGATAGACCAAAATTTGTAGAACGCTGTTGATTAATTAATCGAAGTCGCCATGTATCA GAGTTGTTATCGGACAaaa                                            ]
[+] EMBL CA764664             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TTCTCAACCATGCTCTTGTATAAATTGAACA GTGTAACTTTGGTGTACGAAATTTTTAGAACATTATTGAGATAGACCAAAATTTGTAGAACGCTGTTGATTAATTAATCGAAGTCGCCATGTATCANGAGT                                                           ]


>consensus_10220#0 AAAAAAAAAACTCTCCCGAGCTCTCCTCGCCGCCGCCGCCATGTCCGGGTTCGCGCGGCG CCTCGGCGGGATCCCGTGGAGGGAGATCGCCGGGGAAGCCTTCTCCCGCGTCTTCCTCGT CGCGCAGGCCGTCTGCGCCGTCCACGTCGTCAACGCCCACGTCTGCTCCTTCGCGCTGGT GATGGGCCCGAGCATGCTGCCGGCGATGAACCTGGCGGGGGACGTGGTGGCGGTGGACCT GGTGAGCGCGCGGCTCGGGCGGGTGGCGAGCGGCGACGCCGTGCTCCTCGTCTCGCCGGA GAACCCGCGCAAGGCGGTCGTCAAGCGCGTCGTCGGGATGGAGGGCGACGCCGTCACGTT CCTCGTCGACCCCGGCAACAGCGACGCCTCCAAGACCGTCGTGGTACCAAAAGGCCATGT CTGGGTGCAGGGTGATAATATTTATGCTTCTAGAGATTCAAGACAGTTTGGACCTGTCCC TTATGGTCTAATTACAGGGAAGATCTTTTGTCGGGTTTGGCCACTGAAGGATTTTGGTCC GATAGATCCAATGTCAGCTGAGTAGGGGTAACTCAGCCTTATTTTTCTTCTTCACTTATT TTCAGAATCCAGGCCTCTCGCTCTACCTTTATCTCTCCGAGCCGACCTTTTTTTACCCGT TTGCTCCAGAATTTATCGAAGACGGCATGCATATCTTGAGATTTTTATGATCAGGCAACA AGGCCCTACATTCTGGTTCATGGTGTCTGCCATGGCACATTTTACAGCAAAACCGAGAGC ATCAAAGTTTATTGCTCAGTTTTTTAACATGAGAATTTTGGCCATAGTCCTCAAGGGAAT CCCAAGTTCTCAACCATGCTCTTGTATAAATTGAACAGTGTAACTTTGGTGTACGAAATT TTTAGAACATTATTGAGATAGACCAAAATTTGTAGAACGCTGTTGATTAATTAATCGAAG TCGCCATGTATCAGAGTTGTTATCGGACAGTGGTAAACGCTTACCGGTTTAATAAGTAGA AACAAAATTCTTGTTT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)