|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10227#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 918 fasta sequence
[ATGCCACCGAAGCGGAAGAGGGCTGCAGCCATGGAGACGGCGGGAGGGGACGCCGCGCCGC-CGCCGCAGCAGCAGCGTCGGAACAAATCCTCGGCGGCCAACAAGGGGAAGAAGGGCGGCGCTTCCGGCGGCGGAGGCGGCGGGAGGTGGCCACCGGTCAAGCCGAAGAAGGATCTCCAGGTCAATCGCCTCAAGGGCACCCACCTCCTCACCGTGCCAAACTTCTTCACTTCCGCTGAGGCGAAGGCCTTTGTCGACATTGCTGAGAATATTGGCTTCACGCACCAGGGCAGCCTCGGACCCCTGAAGGGTGAAGCTTATAGAGATAATGACCGGATATCTGTGACAGATCCTTTGCTTGCTCAGACCATTTGGGAATCTGGGATAAACAAAATATTTGAGGACATCAGCATCTCTGGCAAAGTAGCAACCAGCTTGAATCCAAATATCAGGTTCTACAGGTACACTGAAGGTCAGCGATTCGGTAGGCATATTGATGAGAGTGTCGACCTTGGAGATGGTTCAAGAACATTGTATACTTTGCTAATATACCTCTCTGGCAAAGGAAGTGCAAAGGAATCATCAGGGCAAGCTCTTGTTGGAGGGGAGACTGTTTTTTATGATCATCGTGGAGGAGTTGTCGCTGAGGTTGCTCCAGTGCAAGGACTGGCTCTACTCCATCTTCATGGTGCCAAATGCATGCTGCATGAAGCACGGGTTGTGAAAAAGAATATCAAGTATGTGCTTCGTTCTGATGTTGTATTTGCTTAGCTGGAGAATTCTCCATGCTTGTGTTGAAGTACTATAGACCTGAGCATGCTATAGACGAACGGCTAACTTTTCCATTTTACAAACCTTTGTACTAAAGCATGTAACTGATCCAACATGAACTTGGAAGGTGATGACATCAAATTTGTG]
[+] EMBL AK071417 [ATGCCACCGAAGCGGAAGAGGGCTGCAGCCATGGAGACGGCGGGAGGGGACGCCGCGCCGC CGCCGCAGCAGCAGCGTCGGAACAAATCCTCGGCGGCCAACAAGGGGAAGAAGGGCGGCGCTTCCGGCGGCGGAGGCGGCGGGAGGTGGCCACCGGTCAAGCCGAAGAAGGATCTCCAGGTCAATCGCCTCAAGGGCACCCACCTCCTCACCGTGCCAAACTTCTTCACTTCCGCTGAGGCGAAGGCCTTTGTCGACATTGCTGAGAATATTGGCTTCACGCACCAGGGCAGCCTCGGACCCCTGAAGGGTGAAGCTTATAGAGATAATGACCGGATATCTGTGACAGATCCTTTGCTTGCTCAGACCATTTGGGAATCTGGGATAAACAAAATATTTGAGGACATCAGCATCTCTGGCAAAGTAGCAACCAGCTTGAATCCAAATATCAGGTTCTACAGGTACACTGAAGGTCAGCGATTCGGTAGGCATATTGATGAGAGTGTCGACCTTGGAGATGGTTCAAGAACATTGTATACTTTGCTAATATACCTCTCTGGCAAAGGAAGTGCAAAGGAATCATCAGGGCAAGCTCTTGTTGGAGGGGAGACTGTTTTTTATGATCATCGTGGAGGAGTTGTCGCTGAGGTTGCTCCAGTGCAAGGACTGGCTCTACTCCATCTTCATGGTGCCAAATGCATGCTGCATGAAGCACGGGTTGTGAAAAAGAATATCAAGTATGTGCTTCGTTCTGATGTTGTATTTGCTTAGCTGGAGAATTCTCCATGCTTGTGTTGAAGTACTATAGACCTGAGCATGCTATAGACGAACGGCTAACTTTTCCATTTTACAAACCTTTGTACTAAAGCATGTAACTGATCCAACATGAACTTGGAAGGTGATGACATCAAATTTGTG]
[+] EMBL AK104441 [ CCACCGAAGCGGAAGAGGGCTGCAGCCATGGAGACGGCGGGAGGGGACGCCGCGCCGC CGCCGCAGCAGCAGCGTCGGAACAAATCCTCGGCGGCCAACAAGGGGAAGAAGGGCGGCGCTTCCGGCGGCGGAGGCGGCGGGAGGTGGCCACCGGTCAAGCCGAAGAAGGATCTCCAGGTCAATCGCCTCAAGGGCACCCACCTCCTCACCGTGCCAAACTTCTTCACTTCCGCTGAGGCGAAGGCCTTTGTCGACATTGCTGAGAATATTGGCTTCACGCACCAGGGCAGCCTCGGACCCCTGAAGGGTGAAGCTTATAGAGATAATGACCGGATATCTGTGACAGATCCTTTGCTTGCTCAGACCATTTGGGAATCTGGGATAAACAAAATATTTGAGGACATCAGCATCTCTGGCAAAGTAGCAACCAGCTTGAATCCAAATATCAGGTTCTACAGGTACACTGAAGGTCAGCGATTCGGTAGGCATATTGATGAGAGTGTCGACCTTGGAGATGGTTCAAGAACATTGTATACTTTGCTAATATACCTCTCTGGCAAAGGAAGTGCAAAGGAATCATCAGGGCAAGCTCTTGTTGGAGGGGAGACTGTTTTTTATGATCATCGTGGAGGAGTTGTCGCTGAGGTTGCTCCAGTGCAAGGACTGGCTCTACTCCATCTTCATGGTGCCAAATGCATGCTGCATGAAGCACGGGTTGTGAAAAAGAATATCAAGTATGTGCTTCGTTCTGATGTTGTATTTGCTTAGCTGGAGAATTCTCCATGCTTGTGTTGAAGTACTATAGACCTGAGCATGCTATAGACGAACGGCTAACTTTTCCATTTTACAAACCTTTGTACTAAAGCATGTAACTGATCCAACATGAACTTGGAAGGTGATGACATCAA ]
[+] EMBL AK104225 [ GAAGCGGAAGAGGGCTGCAGCCATGGAGACGGCGGGAGGGGACGCCGCGCCGC CGCCGCAGCAGCAGCGTCGGAACAAATCCTCGGCGGCCAACAAGGGGAAGAAGGGCGGCGCTTCCGGCGGCGGAGGCGGCGGGAGGTGGCCACCGGTCAAGCCGAAGAAGGATCTCCAGGTCAATCGCCTCAAGGGCACCCACCTCCTCACCGTGCCAAACTTCTTCACTTCCGCTGAGGCGAAGGCCTTTGTCGACATTGCTGAGAATATTGGCTTCACGCACCAGGGCAGCCTCGGACCCCTGAAGGGTGAAGCTTATAGAGATAATGACCGGATATCTGTGACAGATCCTTTGCTTGCTCAGACCATTTGGGAATCTGGGATAAACAAAATATTTGAGGACATCAGCATCTCTGGCAAAGTAGCAACCAGCTTGAATCCAAATATCAGGTTCTACAGGTACACTGAAGGTCAGCGATTCGGTAGGCATATTGATGAGAGTGTCGACCTTGGAGATGGTTCAAGAACATTGTATACTTTGCTAATATACCTCTCTGGCAAAGGAAGTGCAAAGGAATCATCAGGGCAAGCTCTTGTTGGAGGGGAGACTGTTTTTTATGATCATCGTGGAGGAGTTGTCGCTGAGGTTGCTCCAGTGCAAGGACTGGCTCTACTCCATCTTCATGGTGCCAAATGCATGCTGCATGAAGCACGGGTTGTGAAAAAGAATATCAAGTATGTGCTTCGTTCTGATGTTGTATTTGCTTAGCTGGAGAATTCTCCATGCTTGTGTTGAAGTACTATAGACCTGAGCATGCTATAGACGAACGGCTAACTTTTCCATTTTACAAACCTTTGTACTAAAGCATGTAACTGATCCAACATGAACTTGGAAGGTGATGACATCAA ]
[+] EMBL AU069488 [ AGACGGCGGGAGGGGACGCCGCGCCGC CGCCGCAGCAGCAGCGTCGGAACAAATCCTCGGCGGCCAACAAGGGGAAGAAGGGCGGCGCTTCCGGCGGCGGAGGCGGCGGGAGGTGGCCACCGGTCAAGCCGAAGAAGGATCTCCAGGTCAATCGCCTCAAGGGCACCCACCTCCTCACCGTGCCAAACTTCTTCACTTCCGCTGAGGCGAAGGCCTTTGTCGACATTGCTGAGAATATTGGCTTCACGCACCAGGGCAGCCTCGGACCCCTGAAGGGTGAAGCTTATAGAGATAATGACCGGATATCTGTGACAGATCCTTTGCTTGCTCAGACCATTTGGGAATCTGGGATAAACAAAATATTTGAGGACATCAGCATCTCTGGCAAAGTAGCAACCAGCTTGAATCCAAATATCAGGTTCTACAGGTACACTGAAGGTCAGCGATTCGGTAGGCATATTGATGAGAGTGTCGACCTTGGAGATGGTTCAAGAACATTGTATACTTTGCTAATATACC ]
[+] EMBL C28740 [ AGACGGCGGGAGGGGACGCCGCGCCGC CGCCGCAGCAGCAGCGTCGGAACAAATCCTCGGCGGCCAACAAGGGGAAGAAGGGCGGCGCTTCCGGCGGCGGAGGCGGCGGGAGGTGGCCACCGGTCAAGCCGAAGAAGGATCTCCAGGTCAATCGCCTCAAGGGCACCCACCTCCTCACCGTGCCAAACTTCTTCACTTCCGCTGAGGCGAAGGCCTTTNTCGACATTGCTGAGAATATTGGCTTCACGCACCAGGGCAGCCTCGGACCCCTGAAGGGTGAAGCTTATAGAGATAATNACCGGATATCTGTNACAAATCCTTTGNTTTCTCAGACCA ]
[+] EMBL CB662459 [ CGCCGC CCTCTCGCCGCAGCAGCAGCGTCGGAACAAATCCTCGGCGGCCAACAAGGGGAAGAAGGGCGGCGCTTCCGGCCGCCGAGGCAGCGGGAGGTGGCCACCGGCCAAGCCGAGGAAGGATCTCCAGGTCAATCGCCTCAAGGGCACCCACCTCCTCACCGTGCCAAACTTCTTCCCTTCCGCTGAGGCGAAGGCCTTTGTCGACATTGCTGAGAATATTGGCTTCACGCACCAGGGCAGCCTCGGACCCCTGAAGGGTGAAGCTTATACAGATAATGACCGGATATCTGTGACAAATCCTTTGCTTGCTCAGACCATTTGGGAATCTGGGATAAACAAAATATTTGAGGACATCATCATCTCTGGCAAAGTACCAACCAGCTTGAATCCAAATATCAGGTTCTACAGGTACACTGAAGGTCAGCGATTCGGTACGCATATTGATGAGAGTGTCGACCTTGGAGATGGTTCAAGAACATTGTATACTTTGCCAATATACCTCT ]
consensusID : consensus_10227#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence
[CCATCAATGACACCCTTGTTGAAAAACTACGTTGCTCTGACGAAAAGAGATTGCCCACTTGAAGTTTGGTGATCCATATGGGGTTGATGATATCACCTTTATTATGCTGGCATGAGTCTCCCCTGCATCACAATTTATAATGGTGCCATTACCGTTGAAGCTGGTCCTAACCCCTAACCTGAGGTTACTTTTGTTGTAGGTTGATCCAGTGCAAGGACTGGCTCTAATCCATCTTCATGGTGCCAAATCCATGTTGCATGAAGCACGGGTTGTGAAAAAGAATATCAAGTATGTGCTTGGTTTTGATGTGGTATTTGGTTAGCTGGCGAATTTTCCATGCTCGTGTAGAAGTATTATAGACCTGAGCATGGTATAGATCGAACGGCTAACTTTTCCATTTTTC]
[-] EMBL CB662460 [CCATCAATGACACCCTTGTTGAAAAACTACGTTGCTCTGACGAAAAGAGATTGCCCACTTGAAGTTTGGTGATCCATATGGGGTTGATGATATCACCTTTATTATGCTGGCATGAGTCTCCCCTGCATCACAATTTATAATGGTGCCATTACCGTTGAAGCTGGTCCTAACCCCTAACCTGAGGTTACTTTTGTTGTAGGTTGATCCAGTGCAAGGACTGGCTCTAATCCATCTTCATGGTGCCAAATCCATGTTGCATGAAGCACGGGTTGTGAAAAAGAATATCAAGTATGTGCTTGGTTTTGATGTGGTATTTGGTTAGCTGGCGAATTTTCCATGCTCGTGTAGAAGTATTATAGACCTGAGCATGGTATAGATCGAACGGCTAACTTTTCCATTTTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10227#0 ATGCCACCGAAGCGGAAGAGGGCTGCAGCCATGGAGACGGCGGGAGGGGACGCCGCGCCG 60
consensus_10227#1 ------------------------------------------------------------
consensus_10227#0 CCGCCGCAGCAGCAGCGTCGGAACAAATCCTCGGCGGCCAACAAGGGGAAGAAGGGCGGC 120
consensus_10227#1 ------------------------------------------------------------
consensus_10227#0 GCTTCCGGCGGCGGAGGCGGCGGGAGGTGGCCACCGGTCAAGCCGAAGAAGGATCTCCAG 180
consensus_10227#1 ------------------------------------------------------------
consensus_10227#0 GTCAATCGCCTCAAGGGCACCCACCTCCTCACCGTGCCAAACTTCTTCACTTCCGCTGAG 240
consensus_10227#1 ------------------------------------------------------------
consensus_10227#0 GCGAAGGCCTTTGTCGACATTGCTGAGAATATTGGCTTCACGCACCAGGGCAGCCTCGGA 300
consensus_10227#1 ------------------------------------------------------------
consensus_10227#0 CCCCTGAAGGGTGAAGCTTATAGAGATAATGACCGGATATCTGTGACAGATCCTTTGCTT 360
consensus_10227#1 ------------------------------------------------------------
consensus_10227#0 GCTCAGACCATTTGGGAATCTGGGATAAACAAAATATTTGAGGACATCAGCATCTCTGGC 420
consensus_10227#1 ------------------------------------------------------------
consensus_10227#0 AAAGTAGCAACCAGCTTGAATCCAAATATCAGGTTCTACAGGTACACTGAAGGTCAGCGA 480
consensus_10227#1 -------CCATCAA--TGACACCCTTGTTGAAAAACTAC-GTTGCTCTGACGAAAAGAGA 50
* * ** *** ** * * **** * * * **** * ** **
consensus_10227#0 TTCGGTAGGCATATTGATGAGAGTGTCGACCTTGGAGATGGTTCAAGAACATTGTATACT 540
consensus_10227#1 TT----GCCCACTTGAAGTTTGGTGATCCATATGGGGTTGATGATATCACCTTTATTATG 106
** ** * * *** *** * ** * * ** ** **
consensus_10227#0 TTGCTAATATACCTCTCTGGCAAAGGAAGTGCAAAGGAATCATCAGGGCAAGCTCTTGTT 600
consensus_10227#1 CTGGCATGAGTCTCCCCTGCATCACAATTTATAATGGTGCCATTA----------CCGTT 156
** * * * * *** * * * ** ** *** * ***
consensus_10227#0 GGAGGGGAGACTGTTTTTTATGATCATCGTGGAGGAGTTGTCGCTG-AGGTTGCTCCAGT 659
consensus_10227#1 GAAG------CTGGTCCTAACCCCTAACCTGAGGTTACTTTTGTTGTAGGTTGATCCAGT 210
* ** *** * * * * * ** * * * * ** ****** ******
consensus_10227#0 GCAAGGACTGGCTCTACTCCATCTTCATGGTGCCAAATGCATGCTGCATGAAGCACGGGT 719
consensus_10227#1 GCAAGGACTGGCTCTAATCCATCTTCATGGTGCCAAATCCATGTTGCATGAAGCACGGGT 270
**************** ********************* **** ****************
consensus_10227#0 TGTGAAAAAGAATATCAAGTATGTGCTTCGTTCTGATGTTGTATTTGCTTAGCTGGAGAA 779
consensus_10227#1 TGTGAAAAAGAATATCAAGTATGTGCTTGGTTTTGATGTGGTATTTGGTTAGCTGGCGAA 330
**************************** *** ****** ******* ******** ***
consensus_10227#0 TTCTCCATGCTTGTGTTGAAGTACTATAGACCTGAGCATGCTATAGA-CGAACGGCTAAC 838
consensus_10227#1 TTTTCCATGCTCGTGTAGAAGTATTATAGACCTGAGCATGGTATAGATCGAACGGCTAAC 390
** ******** **** ****** **************** ****** ************
consensus_10227#0 TTTTCCATTTTACAAACCTTTGTACTAAAGCATGTAACTGATCCAACATGAACTTGGAAG 898
consensus_10227#1 TTTTCCATTTTTC----------------------------------------------- 403
*********** *
consensus_10227#0 GTGATGACATCAAATTTGTG 918
consensus_10227#1 --------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||