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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10228#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1298 fasta sequence
[CCAAACCCCGCGCCGCCTCTTACCGCTTCGCGTCAGCTTCGATTTGATTCGGTTCGGTTCGCGCGCGCCCCGATCTATCCCGCGCGAAGTCGATTCCCACGCCACCCGCGCTGTTATGTGCGCGGCTCCCATGGCTTCCACTGCCCAGCCGCAGCAGCAGCCGCAGCAGCAGCAGGAGCAGCAGCCGGTGGCGGCGGCGGCGGTGCCGACTCCGGCTCCTCCGGCTTCCGAGGCGCAGCCGCAG-AAGCCGACGAGGGTATCGTTGTCGTACGAGGAGATCTCCAAGCTCTTCTCGCTACCAATCGCAGAGGCAGCCTCCATCCTCGGTGTTTGCACCAGCGTTTTGAAGAGGATTTGCCGCAGCCACGGCATCGTCAGGTGGCCGTATCGAAAGCTTGTATCTGGGAAGTCTGGTGATGACACAAAAAACGCTGAAAGAGAGAAAGCCAAGGGACTTCTTGAGATATCTAAA-GTTGCAAAACAGAAGGCTCTAAG-CGCATCTGGTCTATCAACAGTATCACCAGG-CGCTTTCCAAGGAGTGGCAAAATCTCAACAGGG-AAGTT-CGAAGGCAGGACAAGTCTCACCCCCAGGAAAACAAAATGTGTTGGGTGGATCAGCAATCTTGTCCTATGGTACCCAAACCAAAGGCATCCCAACCTACATGGACGACTTCAAGTACGGATTTCCATCATCTGGCTTGTCTTTGCAAACTATGAAATGGTGGGGGACTGACAGCCACACGGAGACCACACCTGCGAAAGACGATAACGGTGAAGCCCCTGAATCAGCAAATGAGGCTTCGAAGGGTATGACCGACGATGAGTTGGACTGGGGAGCAGATGAAGCTGAAGCCGAAGCCGATGCCGATAGTGCGATCACAACCGAACCATCTGCACAGCTGTGCTCCCTGAGAAGGAAAGCTGTAGACGATGGGCGCAAGCTGCTGACTGGCAAGTCCTGCGGGGGACTGGAGCTGTGCAGGCTGAATAAGAGGCAGAAGATGGCCCTCGCCCAGGTGTTCGGAGCCTCACTGCCGGAGCAGTTGAGGAGCAAGCTCGGGTGATGATTTTGCCTGCCATTTGTACCTCTGTGTAACACTAGTTACTAGTAGTAGCGACCGGCATGGTTAAGCTGGTTCCTGATGTAACTTGTCCTGATCCATTTGTGTTGTGAGAACTAGATAAATTCGTTGTGAAGAGGATGGTAGGAGTTTTGCCTGCCTGCTTTCCCATTTCACGCATAATTCCTTTCGTCTCAAAATAACTTTATTTATTCATAATTTTATTTGTCTCTAAAAA]
[+] EMBL AK058984 [CCAAACCCCGCGCCGCCTCTTACCGCTTCGCGTCAGCTTCGATTTGATTCGGTTCGGTTCGCGCGCGCCCCGATCTATCCCGCGCGAAGTCGATTCCCACGCCACCCGCGCTGTTATGTGCGCGGCTCCCATGGCTTCCACTGCCCAGCCGCAGCAGCAGCCGCAGCAGCAGCAGGAGCAGCAGCCGGTGGCGGCGGCGGCGGTGCCGACTCCGGCTCCTCCGGCTTCCGAGGCGCGGCCGCAG AAGCCGACGAGGGTATCGTTGTCGTACGAGGAGATCTCCAAGCTCTTCTCGCTACCAATCGCAGAGGCAGCCTCCATCCTCGGTGTTTGCACCAGCGTTTTGAAGAGGATTTGCCGCAGCCACGGCATCGTCAGGTGGCCGTATCGAAAGCTTGTATCTGGGAAGTCTGGTGATGACACAAAAAACGCTGAAAGAGAGAAAGCCAAGGGACTTCTTGAGATATCTAAA GTTGCAAAACAGAAGGCTCTAAG CGCATCTGGTCTATCAACAGTATCACCAGG CGCTTTCCAAGGAGTGGCAAAATCTCAACAGGG AAGTT CGAAGGCAGGACAAGTCTCACCCCCAGGAAAACAAAATGTGTTGGGTGGATCAGCAATCTTGTCCTATGGTACCCAAACCAAAGGCATCCCAACCTACATGGACGACTTCAAGTACGGATTTCCATCATCTGGCTTGTCTTTGCAAACTATGAAATGGTGGGGGACTGACAGCCACACGGAGACCACACCTGCGAAAGACGATAACGGTGAAGCCCCTGAATCAGCAAATGAGGCTTCGAAGGGTATGACCGACGATGAGTTGGACTGGGGAGCAGATGAAGCTGAAGCCGAAGCCGATGCCGATAGTGCGATCACAACCGAACCATCTGCACAGCTGTGCTCCCTGAGAAGGAAAGCTGTAGACGATGGGCGCAAGCTGCTGACTGGCAAGTCCTGCGGGGGACTGGAGCTGTGCAGGCTGAATAAGAGGCAGAAGATGGCCCTCGCCCAGGTGTTCGGAGCCTCACTGCCGGAGCAGTTGAGGAGCAAGCTCGGGTGATGATTTTGCCTGCCATTTGTACCTCTGTGTAACACTAGTTACTAGTAGTAGCGACCGGCATGGTTAAGCTGGTTCCTGATGTAACTTGTCCTGATCCATTTGTGTTGTGAGAACTAGATAAATTCGTTGTGAAGAGGATGGTAGGAGTTTTGCCTGCCTGCT ]
[+] EMBL CB656088 [ GGTTCGGTTCGCGCGCGCCCCGATCTATCCCGCGCGAAGTCGATTCCCACGCCACCCGCGCTGTTATGTGCGCGGCTCCCATGGCTTCCACTGCCCAGCCGCAGCAGCAGCCGCAGCAGCAGCAGGAGCAGCAGCCGGTGGCGGCGGCGGCGGTGCCGACTCCGGCTCCTCCGGCTTCCGAGGCGCAGCCGCAG AAGCCGACGAGGGTATCGTTGTCGTACGAGGAGATCTCCAAGCTCTTCTCGCTACCAATCGCAGAGGCAGCCTCCATCCTCGGTGTTTGCACCAGCGTTTTGAAGAGGATTTGCCGCAGCCACGGCATCGTCAGGTGGCCGTATCGAAAGCTTGTATCTGGGAAGTCTGGTGATGACACAAAAAACGCTGAAAGAGAGAAAGCCAAGGGACTTCTTGAGATATCTAAA GTTGCAAAACAGAAGGCTCTAAG CGCATCTGGTCTATCAACAGTATCACCAGG CGCTTTCCAAGGAGTGGCAAAATCTCAACAGGG AAGTT CGAAGGCAGGACAAGTCTCACCCCCAGGAAAACAAAATGTGTTGGGTGGATCAGCAATCTTGTCCTATGGTACCCAAACCAAAGGCATCCCAACCTACATGGACGACTTCAAGTACGGATTTCCATCATCTGGCTTGTCTTTGCAAACTATGAAATGGTGGGGGACTGACAGCCACACGGAGACCACACCTGCGAGAGACGATAACGGTGAAGCCCCTGAATCAGCAAATGAGGCTTCGAAGGGTATGACCGACGATGAGTTGGACTGGGGAGCAGATGAAGCTGAAGCCGAAGCCGATGCCGATAGTG ]
[+] EMBL AU069465 [ GGCGGCGGTNNCGACTCCGGCTTCTCCGGCTTCCGAGGCGCAGCCGCAG AAGCCGACGAGGGTATCGTTGTCGTACGAGGAGATCTCCAAGCTCTTCTCGCTACCAATCGCAGAGGCAGCCTCCATCCTCGGTGTTTGCACCAGCGTTTTGAAGAGGATTTGCCGCAGCCACGGCATCGTCAGGTGGCCGTATCGAAAGCTTGTATCTGGGAAGTCTGGTGATGACACAAAAAACGCTGAAAGAGAGAAAGCCAAGGGACTTCTTGAGATATCTAAA GTTGCAAAACAGAA GCTCTAAGCCGCATCTGGTCTATCAACAGTATCACCAGGCCGCTTTCCAAGGAGTGGCAAAATCTTAACAGGGNAAGTTCCGAAGGCAGG ]
[+] EMBL AU069565 [ GGCGGCGGTGCCGACTCCGGCTCCTCCGGCTTCCNAGGCGCA CNNANGAAAGCCGACGAGGGTATCGTTGTCGTACGAGGAGATCTCCAAGCTCTTCTCGCTACCAATCGCAGAGGCAGCCTCCATCCTCGGTGTTTGCACCAGCTTTTTNAAGAGGATTTNCCGCAGCCACGGCATCGTNAGGTGGCCGTATCGAAAGCTTGTATCTGGNAAGTNTGGTGATGACACAAAAAACGCTGAANGNGAGAAAGCCAAGGGACTTNTTGAGGTATCTAAAGGTTGAAAAAAAGAAGG ]
[+] EMBL AU222563 [ CCGATAGTGCGATCACAACCGAACCATCTGCACAGCTGTGCTCCCTGAGAAGGAAAGCTGTAGACGATGGGCGCAAGCTGCTGACTGGCAAGTCCTGCGGGGGACTGGAGCTGTGCAGGCTGAATAAGAGGCAGAAGATGGCCCTCGCCCAGGTGTTCGGAGCCTCACTGCCGGAGCAGTTGAGGAGCAAGCTCGGGTGATGATTTTGCCTGCCATTTGTACCTCTGTGTAACACTAGTTACTAGTAGTAGCGACCGGCATGGTTAAGCTGGTTCCTGATGTAACTTGTCCTGATCCATTTGTGTTGTGAGAACTAGATAAATTCGTTGTGAAGAGGATGGTAGGAGTTTTGCCTGCCTGCTTTCCCATTTCACGCATAATTCCTTTCGTCTCAAAATAACTTTATTTATTCATAATTTTATTTGTCTCTAAAAA]
[+] EMBL AU172362 [ AGTGCGATCACAACCGAACCATCTGCACAGCTGTGCTCCCTGAGAAGGAAAGCTGTAGACGATGGGCGCAAGCTGCTGACTGGCAAGTCCTGCGGGGGACTGGAGCTGTGCAGGCTGAATAAGAGGCAGAAGATGGCCCTCGCCCAGGTGTTCGGAGCCTCACTGCCGGAGCAGTTGAGGAGCAAGCTCGGGTGATGATTTTGCCTGCCATTTGTACCTCTGTGTAACACTAGTTACTAGTAGTAGCGACCGGCATGGTTAAGCTGGTTCCTGATGTAACTTGTCCTGATCCATTTGTGTTGTGAGAACTAGATAAATTCGTTGTGAAGAGGATGGTAGGAGTTTTGCCTGCCTGCTTTCCCATTTCACGCATAATTCCTTTCGTCTCAAAATAACTTTATTTATTCATAATTTTATTTGTCTCTAAAAA]
consensusID : consensus_10228#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 716 fasta sequence
[TGGCAAAATCTCAACAGGGAAGTTCGAAGGCAGGACAAGTCTCACCCCCAGGAAAACAAAATGTGTTGGGTGGATCAGCAATCTTGTCCTATGGTACCCAAACCAAAGGCATCCCAACCTACATGGACGACTTCAAGTACGGATTTCCATCATCTGGCTTGTCTTTGCAAACTATGAAATGGTGGGGGACTGACAGCCACACGGAGACCACACCTGCGAAAGACGATAACGGTGAAGCCCCTGAATCAGCAAATGAGGCTTCGAAGGGTATGACCGACGATGAGTTGGACTGGGGAGCAGATGAAGCTGAAGCCGAAGCCGATGCCGATAGTGCGATCACAACCGAACCATCTGCACAGCTGTGCTCCCTGAGAAGGAAAGCTGTAGACGATGGGCGCAAGCTGCTGACTGGCAAGTCCTGCGGGGGACTGGAGCTGTGCAGGCTGAATAAGAGGCAGAAGATGGCCCTCGCCCAGGTGTTCGGAGCCTCACTGCCGGAGCAGTTGAGGAGCAAGCTCGGGTGATGATTTTGCCTGCCATTTGTACCTCTGTGTAACACTAGTTACTAGTAGTAGCGACCGGCATGGTTAAGCTGGTTCCTGATGTAACTTGTCCTGATCCATTTGTGTTGTGAGAACTAGATAAATTCGTTGTGAAGAGGATGGTAGGAGTTTGGCCTGCCTGCTTTCCCATTTCCCGCAAAAAAAAAAAAAAGA]
[-] EMBL CB656089 [TGGCAAAATCTCAACAGGGAAGTTCGAAGGCAGGACAAGTCTCACCCCCAGGAAAACAAAATGTGTTGGGTGGATCAGCAATCTTGTCCTATGGTACCCAAACCAAAGGCATCCCAACCTACATGGACGACTTCAAGTACGGATTTCCATCATCTGGCTTGTCTTTGCAAACTATGAAATGGTGGGGGACTGACAGCCACACGGAGACCACACCTGCGAAAGACGATAACGGTGAAGCCCCTGAATCAGCAAATGAGGCTTCGAAGGGTATGACCGACGATGAGTTGGACTGGGGAGCAGATGAAGCTGAAGCCGAAGCCGATGCCGATAGTGCGATCACAACCGAACCATCTGCACAGCTGTGCTCCCTGAGAAGGAAAGCTGTAGACGATGGGCGCAAGCTGCTGACTGGCAAGTCCTGCGGGGGACTGGAGCTGTGCAGGCTGAATAAGAGGCAGAAGATGGCCCTCGCCCAGGTGTTCGGAGCCTCACTGCCGGAGCAGTTGAGGAGCAAGCTCGGGTGATGATTTTGCCTGCCATTTGTACCTCTGTGTAACACTAGTTACTAGTAGTAGCGACCGGCATGGTTAAGCTGGTTCCTGATGTAACTTGTCCTGATCCATTTGTGTTGTGAGAACTAGATAAATTCGTTGTGAAGAGGATGGTAGGAGTTTGGCCTGCCTGCTTTCCCATTTCCCGCAAAAAAAAAAAAAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10228#0 CCAAACCCCGCGCCGCCTCTTACCGCTTCGCGTCAGCTTCGATTTGATTCGGTTCGGTTC 60
consensus_10228#1 ------------------------------------------------------------
consensus_10228#0 GCGCGCGCCCCGATCTATCCCGCGCGAAGTCGATTCCCACGCCACCCGCGCTGTTATGTG 120
consensus_10228#1 ------------------------------------------------------------
consensus_10228#0 CGCGGCTCCCATGGCTTCCACTGCCCAGCCGCAGCAGCAGCCGCAGCAGCAGCAGGAGCA 180
consensus_10228#1 ------------------------------------------------------------
consensus_10228#0 GCAGCCGGTGGCGGCGGCGGCGGTGCCGACTCCGGCTCCTCCGGCTTCCGAGGCGCAGCC 240
consensus_10228#1 ------------------------------------------------------------
consensus_10228#0 GCAGAAGCCGACGAGGGTATCGTTGTCGTACGAGGAGATCTCCAAGCTCTTCTCGCTACC 300
consensus_10228#1 ------------------------------------------------------------
consensus_10228#0 AATCGCAGAGGCAGCCTCCATCCTCGGTGTTTGCACCAGCGTTTTGAAGAGGATTTGCCG 360
consensus_10228#1 ------------------------------------------------------------
consensus_10228#0 CAGCCACGGCATCGTCAGGTGGCCGTATCGAAAGCTTGTATCTGGGAAGTCTGGTGATGA 420
consensus_10228#1 ------------------------------------------------------------
consensus_10228#0 CACAAAAAACGCTGAAAGAGAGAAAGCCAAGGGACTTCTTGAGATATCTAAAGTTGCAAA 480
consensus_10228#1 ------------------------------------------------------------
consensus_10228#0 ACAGAAGGCTCTAAGCGCATCTGGTCTATCAACAGTATCACCAGGCGCTTTCCAAGGAGT 540
consensus_10228#1 -----------------------------------------------------------T 1
*
consensus_10228#0 GGCAAAATCTCAACAGGGAAGTTCGAAGGCAGGACAAGTCTCACCCCCAGGAAAACAAAA 600
consensus_10228#1 GGCAAAATCTCAACAGGGAAGTTCGAAGGCAGGACAAGTCTCACCCCCAGGAAAACAAAA 61
************************************************************
consensus_10228#0 TGTGTTGGGTGGATCAGCAATCTTGTCCTATGGTACCCAAACCAAAGGCATCCCAACCTA 660
consensus_10228#1 TGTGTTGGGTGGATCAGCAATCTTGTCCTATGGTACCCAAACCAAAGGCATCCCAACCTA 121
************************************************************
consensus_10228#0 CATGGACGACTTCAAGTACGGATTTCCATCATCTGGCTTGTCTTTGCAAACTATGAAATG 720
consensus_10228#1 CATGGACGACTTCAAGTACGGATTTCCATCATCTGGCTTGTCTTTGCAAACTATGAAATG 181
************************************************************
consensus_10228#0 GTGGGGGACTGACAGCCACACGGAGACCACACCTGCGAAAGACGATAACGGTGAAGCCCC 780
consensus_10228#1 GTGGGGGACTGACAGCCACACGGAGACCACACCTGCGAAAGACGATAACGGTGAAGCCCC 241
************************************************************
consensus_10228#0 TGAATCAGCAAATGAGGCTTCGAAGGGTATGACCGACGATGAGTTGGACTGGGGAGCAGA 840
consensus_10228#1 TGAATCAGCAAATGAGGCTTCGAAGGGTATGACCGACGATGAGTTGGACTGGGGAGCAGA 301
************************************************************
consensus_10228#0 TGAAGCTGAAGCCGAAGCCGATGCCGATAGTGCGATCACAACCGAACCATCTGCACAGCT 900
consensus_10228#1 TGAAGCTGAAGCCGAAGCCGATGCCGATAGTGCGATCACAACCGAACCATCTGCACAGCT 361
************************************************************
consensus_10228#0 GTGCTCCCTGAGAAGGAAAGCTGTAGACGATGGGCGCAAGCTGCTGACTGGCAAGTCCTG 960
consensus_10228#1 GTGCTCCCTGAGAAGGAAAGCTGTAGACGATGGGCGCAAGCTGCTGACTGGCAAGTCCTG 421
************************************************************
consensus_10228#0 CGGGGGACTGGAGCTGTGCAGGCTGAATAAGAGGCAGAAGATGGCCCTCGCCCAGGTGTT 1020
consensus_10228#1 CGGGGGACTGGAGCTGTGCAGGCTGAATAAGAGGCAGAAGATGGCCCTCGCCCAGGTGTT 481
************************************************************
consensus_10228#0 CGGAGCCTCACTGCCGGAGCAGTTGAGGAGCAAGCTCGGGTGATGATTTTGCCTGCCATT 1080
consensus_10228#1 CGGAGCCTCACTGCCGGAGCAGTTGAGGAGCAAGCTCGGGTGATGATTTTGCCTGCCATT 541
************************************************************
consensus_10228#0 TGTACCTCTGTGTAACACTAGTTACTAGTAGTAGCGACCGGCATGGTTAAGCTGGTTCCT 1140
consensus_10228#1 TGTACCTCTGTGTAACACTAGTTACTAGTAGTAGCGACCGGCATGGTTAAGCTGGTTCCT 601
************************************************************
consensus_10228#0 GATGTAACTTGTCCTGATCCATTTGTGTTGTGAGAACTAGATAAATTCGTTGTGAAGAGG 1200
consensus_10228#1 GATGTAACTTGTCCTGATCCATTTGTGTTGTGAGAACTAGATAAATTCGTTGTGAAGAGG 661
************************************************************
consensus_10228#0 ATGGTAGGAGTTTTGCCTGCCTGCTTTCCCATTTCACGCATAATTCCTTTCGTCTCAAAA 1260
consensus_10228#1 ATGGTAGGAGTTTGGCCTGCCTGCTTTCCCATTTCCCGCAAAA--------AAAAAAAAA 713
************* ********************* **** ** ****
consensus_10228#0 TAACTTTATTTATTCATAATTTTATTTGTCTCTAAAAA 1298
consensus_10228#1 AGA----------------------------------- 716
*
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||