cluster # 1023

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Oryza sativa
cluster # 1023 cluster # 1023 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1023#0 length = 752 sequences # 1

consensus_1023#1 length = 381 sequences # 1

consensusID : consensus_1023#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 752
fasta sequence

                              [CGATCCGGAGCATCTCCATCATAGTATCCGACGACGACGCCGCCGCGGCGGGGGCGCCGTCGGCGGCCCCCCGGCGGGCCCGAGCCGCCCGGCGGAAGGCGGCGCGCGGCCTGGGGCAGCGGGCCGTGCGGCTGGTGGCGCGGTGGTGGCCCGTCCTCCTGCTCCTCCCGGCCGTCATGCTGCTCCTCTTCGAGGCCTCGCGTCTCCGCGGCGCCTCCCCCGACGGGCCATCCCCGCACGTATCCAGCTCCAGCCTCGGCCGGCTCGACCCGACCACCCGCCTCGTCCATGGCGTGCGCGAGCGTGAGTGCTTCTCTCTCTCCCCTGTTACGATCTGAGTGTAGGCTTTCCCCCGAATTCCTCTAGTGGTTCCCAACTTCCAGTGAGGATTTGCTACGAGTTTGAGAAATTGGTAATGTGGGTGGCTGGGTGCTATGTTGCATAACGTATTGAGCTTATGTTGGCAGTCTTTACTACTGTTTTTGCACAATTCATTATATATATCGTGGCAGTTGACATTTGGACTCAACATTTTAGATCTTGCGCACTGAGAGAGTATGCGATCGTTCTTAATTCCTGCACTACAAATGTCTGGAACTTCATTAGTCAAGGCAAATCACATGTCCTTAGGGAATTACTCATAACTCATAACAGATCAGATAGCAATCGCATTTCAAATAAGTTTACCTACTAGCTGTTAGTACCTTTTGTTATTCTTTTTATTCAGTAAGTTTCTCTTGGTTAGCAAATCC]

[+] EMBL CB632914             [CGATCCGGAGCATCTCCATCATAGTATCCGACGACGACGCCGCCGCGGCGGGGGCGCCGTCGGCGGCCCCCCGGCGGGCCCGAGCCGCCCGGCGGAAGGCGGCGCGCGGCCTGGGGCAGCGGGCCGTGCGGCTGGTGGCGCGGTGGTGGCCCGTCCTCCTGCTCCTCCCGGCCGTCATGCTGCTCCTCTTCGAGGCCTCGCGTCTCCGCGGCGCCTCCCCCGACGGGCCATCCCCGCACGTATCCAGCTCCAGCCTCGGCCGGCTCGACCCGACCACCCGCCTCGTCCATGGCGTGCGCGAGCGTGAGTGCTTCTCTCTCTCCCCTGTTACGATCTGAGTGTAGGCTTTCCCCCGAATTCCTCTAGTGGTTCCCAACTTCCAGTGAGGATTTGCTACGAGTTTGAGAAATTGGTAATGTGGGTGGCTGGGTGCTATGTTGCATAACGTATTGAGCTTATGTTGGCAGTCTTTACTACTGTTTTTGCACAATTCATTATATATATCGTGGCAGTTGACATTTGGACTCAACATTTTAGATCTTGCGCACTGAGAGAGTATGCGATCGTTCTTAATTCCTGCACTACAAATGTCTGGAACTTCATTAGTCAAGGCAAATCACATGTCCTTAGGGAATTACTCATAACTCATAACAGATCAGATAGCAATCGCATTTCAAATAAGTTTACCTACTAGCTGTTAGTACCTTTTGTTATTCTTTTTATTCAGTAAGTTTCTCTTGGTTAGCAAATCC]




>consensus_1023#0
CGATCCGGAGCATCTCCATCATAGTATCCGACGACGACGCCGCCGCGGCGGGGGCGCCGT
CGGCGGCCCCCCGGCGGGCCCGAGCCGCCCGGCGGAAGGCGGCGCGCGGCCTGGGGCAGC
GGGCCGTGCGGCTGGTGGCGCGGTGGTGGCCCGTCCTCCTGCTCCTCCCGGCCGTCATGC
TGCTCCTCTTCGAGGCCTCGCGTCTCCGCGGCGCCTCCCCCGACGGGCCATCCCCGCACG
TATCCAGCTCCAGCCTCGGCCGGCTCGACCCGACCACCCGCCTCGTCCATGGCGTGCGCG
AGCGTGAGTGCTTCTCTCTCTCCCCTGTTACGATCTGAGTGTAGGCTTTCCCCCGAATTC
CTCTAGTGGTTCCCAACTTCCAGTGAGGATTTGCTACGAGTTTGAGAAATTGGTAATGTG
GGTGGCTGGGTGCTATGTTGCATAACGTATTGAGCTTATGTTGGCAGTCTTTACTACTGT
TTTTGCACAATTCATTATATATATCGTGGCAGTTGACATTTGGACTCAACATTTTAGATC
TTGCGCACTGAGAGAGTATGCGATCGTTCTTAATTCCTGCACTACAAATGTCTGGAACTT
CATTAGTCAAGGCAAATCACATGTCCTTAGGGAATTACTCATAACTCATAACAGATCAGA
TAGCAATCGCATTTCAAATAAGTTTACCTACTAGCTGTTAGTACCTTTTGTTATTCTTTT
TATTCAGTAAGTTTCTCTTGGTTAGCAAATCC

consensusID : consensus_1023#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 381
fasta sequence

                              [ACTTCCCCCACCAATCGCTTCTCCCCCGATGCCGTCGTCGACGATCCGGAGCATCTCCATCACAGCATCCGACGACGACGCCGCCGCGGNGNGGNGCGCCGTCGGGGCCCCCCGGCGGGCCCGAGCCGCCCGGCGGAAGGCGGCGCGCGGCCTGGGGCAGCGGGCCGTGCGGCTGGTGGCGCGGTGGTGGCCCGTCCTCCTGCTCCTCCCGGCCGTCGCGCTGCTCCTCTTCGAGGCCTCGCGTCTTCGGGCGCCTCCCCCGANGGGCCATCCCGCACGTATTCAGCTCCANCCTCGGCCGGGTNGAACCGACAACCCGCTNGTCATGGGGTTCGCAAATTGCTTTAANTTCCTTAATCCAGAAGTNTAAAAGATTTGTAN]

[+] EMBL C74442               [ACTTCCCCCACCAATCGCTTCTCCCCCGATGCCGTCGTCGACGATCCGGAGCATCTCCATCACAGCATCCGACGACGACGCCGCCGCGGNGNGGNGCGCCGTCGGGGCCCCCCGGCGGGCCCGAGCCGCCCGGCGGAAGGCGGCGCGCGGCCTGGGGCAGCGGGCCGTGCGGCTGGTGGCGCGGTGGTGGCCCGTCCTCCTGCTCCTCCCGGCCGTCGCGCTGCTCCTCTTCGAGGCCTCGCGTCTTCGGGCGCCTCCCCCGANGGGCCATCCCGCACGTATTCAGCTCCANCCTCGGCCGGGTNGAACCGACAACCCGCTNGTCATGGGGTTCGCAAATTGCTTTAANTTCCTTAATCCAGAAGTNTAAAAGATTTGTAN]




>consensus_1023#1
ACTTCCCCCACCAATCGCTTCTCCCCCGATGCCGTCGTCGACGATCCGGAGCATCTCCAT
CACAGCATCCGACGACGACGCCGCCGCGGNGNGGNGCGCCGTCGGGGCCCCCCGGCGGGC
CCGAGCCGCCCGGCGGAAGGCGGCGCGCGGCCTGGGGCAGCGGGCCGTGCGGCTGGTGGC
GCGGTGGTGGCCCGTCCTCCTGCTCCTCCCGGCCGTCGCGCTGCTCCTCTTCGAGGCCTC
GCGTCTTCGGGCGCCTCCCCCGANGGGCCATCCCGCACGTATTCAGCTCCANCCTCGGCC
GGGTNGAACCGACAACCCGCTNGTCATGGGGTTCGCAAATTGCTTTAANTTCCTTAATCC
AGAAGTNTAAAAGATTTGTAN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1023#0      -----------------------------------------CGATCCGGAGCATCTCCAT 19
consensus_1023#1      ACTTCCCCCACCAATCGCTTCTCCCCCGATGCCGTCGTCGACGATCCGGAGCATCTCCAT 60
                                                               *******************

consensus_1023#0      CATAGTATCCGACGACGACGCCGCCGCGGCGGGGG-CGCCGTCGGCGGCCCCCCGGCGGG 78
consensus_1023#1      CACAGCATCCGACGACGACGCCGCCGCGGNGNGGNGCGCCGTCGG-GGCCCCCCGGCGGG 119
                      ** ** *********************** * **  ********* **************

consensus_1023#0      CCCGAGCCGCCCGGCGGAAGGCGGCGCGCGGCCTGGGGCAGCGGGCCGTGCGGCTGGTGG 138
consensus_1023#1      CCCGAGCCGCCCGGCGGAAGGCGGCGCGCGGCCTGGGGCAGCGGGCCGTGCGGCTGGTGG 179
                      ************************************************************

consensus_1023#0      CGCGGTGGTGGCCCGTCCTCCTGCTCCTCCCGGCCGTCATGCTGCTCCTCTTCGAGGCCT 198
consensus_1023#1      CGCGGTGGTGGCCCGTCCTCCTGCTCCTCCCGGCCGTCGCGCTGCTCCTCTTCGAGGCCT 239
                      **************************************  ********************

consensus_1023#0      CGCGTCTCCGCGGCGCCTCCCCCGACGGGCCATCCCCGCACGTATCCAGCTCCAGCCTCG 258
consensus_1023#1      CGCGTCTTCG-GGCGCCTCCCCCGANGGGCCATCCC-GCACGTATTCAGCTCCANCCTCG 297
                      ******* ** ************** ********** ******** ******** *****

consensus_1023#0      GCCGGCTCGACCCGACCACCCGCCTCGTCCATGGCGTGCGCGAGCGTGAGTGCTTCTCTC 318
consensus_1023#1      GCCGGGTNGAACCGACAACCCGC-TNGTC-ATGGGGTTCGCAAATTGCTTTAANTTCCTT 355
                      ***** * ** ***** ****** * *** **** ** *** *       *   *  ** 

consensus_1023#0      TCTCCCCTGTTACGATCTGAGTGTAGGCTTTCCCCCGAATTCCTCTAGTGGTTCCCAACT 378
consensus_1023#1      AATCCAGAAGTNTAAAAGATTTGTAN---------------------------------- 381
                        ***     *   *      ****                                   

consensus_1023#0      TCCAGTGAGGATTTGCTACGAGTTTGAGAAATTGGTAATGTGGGTGGCTGGGTGCTATGT 438
consensus_1023#1      ------------------------------------------------------------
                                                                                  

consensus_1023#0      TGCATAACGTATTGAGCTTATGTTGGCAGTCTTTACTACTGTTTTTGCACAATTCATTAT 498
consensus_1023#1      ------------------------------------------------------------
                                                                                  

consensus_1023#0      ATATATCGTGGCAGTTGACATTTGGACTCAACATTTTAGATCTTGCGCACTGAGAGAGTA 558
consensus_1023#1      ------------------------------------------------------------
                                                                                  

consensus_1023#0      TGCGATCGTTCTTAATTCCTGCACTACAAATGTCTGGAACTTCATTAGTCAAGGCAAATC 618
consensus_1023#1      ------------------------------------------------------------
                                                                                  

consensus_1023#0      ACATGTCCTTAGGGAATTACTCATAACTCATAACAGATCAGATAGCAATCGCATTTCAAA 678
consensus_1023#1      ------------------------------------------------------------
                                                                                  

consensus_1023#0      TAAGTTTACCTACTAGCTGTTAGTACCTTTTGTTATTCTTTTTATTCAGTAAGTTTCTCT 738
consensus_1023#1      ------------------------------------------------------------
                                                                                  

consensus_1023#0      TGGTTAGCAAATCC 752
consensus_1023#1      --------------