These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10231#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1578 fasta sequence [CCGCACCATCTCTCCAGTCTCCATCCTTGATGGTCTCCTTGCTCCCCCGCGCGCCCTGCCTCGCCTCCTCCATCCCCAAGCCCACCGCCCTTCGGCCGCCGTGCATGGCGTCCACATCCGCCGCGGCCCCTGCCGCTGCAGCGGCGACGGCGGAGGCGTCCGCGTCCCGGCCGCCGAGGAAGCTGCCGGTGCTGCTGTTCGACGTCATGGACACCGTCGTCCGCGACCCCTTCTACCACCACATACCGGCCTTCTTCCAAATGTCAATGAAGGAACTCCTCGAAAACAAGCATCCAACAGCATGGTCTGAATTTGAGATGGGTCTAATTGATGAGAATGAACTGGCCAAAAAGTTCTTCAATGATGGCAGGTCTTTTGATTTGGAAGGTTTGAAAGCATGCATGGTGAGGGCATATGAGTACATCGATGGTGTTGAAGACATTCTTTACAGTTTGAAGCAAAATAACTATGAAGTGCAT-GCATTTACAAATTATCCAGTGTGGTACCAGTTAGTTGAGGAGAAGTTAAAGCTCTCAAAGTATTTGTCCTGGACATTCTGTTCATGCACAGTTGGTAAGCGCAAACCTTCGCCTGATTTTTATCTACATGCTGTGGACCACCTAAACGTTGATCCAGCAAGCTGCATATTCATTGATGACAGGATGACAAACATTGAAGCAGCCCTTAGTGTAGGAATGGTTGGTTTGCAATTTAAAAATGCTGAGGTGCTCAAGAAGGATTTATGCTCGCTTGGAGTTGAATTTGCA-CCTGTGCATGAAGGTGAAATACAAGTCCAATAAGGTTGCACTTTGTTAACTCTTCTGCTCATGTGTATAAAATTCATATATCTGACCCTTCTGTCTTCTGAACCTTGTCAATAACATGAAGA-CCCCTGATTGTTGCAGATATAAACTACTAATATATTTTGTTTATTCAAGTGTGCGAATTCTCAAAGCATTCATTAGCTTCCATGTTTCCAACAAGTAAAGGTGAACAAAATACCAATGGCTTGGAATACATGCCAGTGCTTAATCAATAGAACTTTACCACAATCTCTGTTCAGGATAAAGATAAATCATCTTGAACTAACTTTAGGTTAAATTATTTATCTATCTAATACTAGACTAATCCAGACAAACTTGTGCTTGGATCAGGTGTAGCTCATGCACACGTTGTTAGCGCTTAAAAAATGGAAACATGGTTAGCGCTTAAAAAATCCAGAGTTAATTAAATGAGCCCCAGATTCAAGCATAGTAATTTGCTTAAAGCTAGGTAAAGAACAGCCTGAGCTAGCTGGCTTGAGCCAAAAAAGGATAGTTTTGAGGAACAAGAACAAACAGGCTCAATCATGTGTTAACTGTTAACTCAAAGCTTGATCAATAATCCATCAACTCAAAGCTGTGACTGCATTTTATTGGTTCAATAATCAAGATCCTAAGTAACTATGTTTTGTCAGAGTGATCGCCAATTAATATTCAAGGTCTTGCATTAAATTATAATGGATGATCATATGTATCTGTTATGCTTTCATAATTAAGAGTATCTCTGAAACTCCATGTTCCTCTCAAAAAAAAAAAA] [+] EMBL CB668381 [CCGCACCATCTCTCCAGTCTCCATCCTTGATGGTCTCCTTGCTCCCCCGCGCGCCCTGCCTCGCCTCCTCCATCCCCAAGCCCACCGCCCTTCGGCCGCCGTGCATGGCGTCCACATCCGCCGCGGCCCCTGCCGCTGCAGCGGCGACGGCGGAGGCGTCCGCGTCCCGGCCGCCGAGGAAGCTGCCGGTGCTGCTGTTCGACGTCATGGACACCGTCGTCCGCGACCCCTTCTACCACCACATACCGGCCTTCTTCCAAATGTCAATGAAGGAACTCCTCGAAAACAAGCATCCAACAGCATGGTCTGAATTTGAGATGGGTCTAATTGATGAGAATGAACTGGCCAAAAAGTTCTTCAATGATGGCAGGTCTTTTGATTTGGAAGGTTTGAAAGCATGCATGGTGAGGGCATATGAGTACATCGATGGTGTTGAAGACATTCTTTACAGTTTGAAGCAAAATAACTATGAAGTGCAT GCATTTACAAATTATCCAGTGTGGTACCAGTTAGTTGAGGAGAAGTTAAAGCTCTCAAAGTATTTGTCCTGGACATTCTGTTCATGCACAGTTGGTAAGCGCAAACCTTCGCCTGATTTTTATCTACATGCTGTGGACCACCTAAACGTTGATCCAGCAAGCTGCATATTCATTGATGACAGGATGACAAACATTGAAGCAGCCCTTAGTGTAGGAATGGTTGGTTTGCAATTTAAAAATGCTGAGGTGCTCAAGAAGGATTTATGCTCGCTTGGAGTTGAATTTGCA CCTGTGCATGAAAGTGAAA ACAAGTCCAATAAGGTTGCACTTTGTTAACTCTTCTGCTCATGTGTATAAAATTCATA ] [-] EMBL CB668382 [ GCGGAGGCGTCCGCGTCCCGGCCGCCGAGGAAGCTGCCGGTGCTGCTGTTCGACGTCATGGACACCGTCGTCCGCGACCCCTTCTACCACCACATACCGGCCTTCTTCCAAATGTCAATGAAGGAACTCCTCGAAAACAAGCATCCAACAGCATGGTCTGAATTTGAGATGGGTCTAATTGATGAGAATGAACTGGCCAAAAAGTTCTTCAATGATGGCAGGTCTTTTGATTTGGAAGGTTTGAAAGCATGCATGGTGAGGGCATATGAGTACATCGATGGTGTTGAAGACATTCTTTACAGTTTGAAGCAAAATAACTATGAAGTGCAT GCATTTACAAATTATCCAGTGTGGTACCAGTTAGTTGAGGAGAAGTTAAAGCTCTCAAAGTATTTGTCCTGGACATTCTGTTCATGCACAGTTGGTAAGCGCAAACCTTCGCCTGATTTTTATCTACATGCTGTGGACCACCTAAACGTTGATCCAGCAAGCTGCATATTCATTGATGACAGGATGACAAACATTGAAGCAGCCCTTAGTGTAGGAATGGTTGGTTTGCAATTTAAAAATGCTGAGGTGCTCAAGAAGGATTTATGCTCGCTTGGAGTTGAATTTGCA CCTGTGCATGAAGGTGAAATACAAGTCCAATAAGGTTGCACTTTGTTAACTCTTCTGCTCATGTGTATAAAATTCATATATCTGACCCTTCTGTCTTCTGAACCTTGTCAATAACATGAAGA CCCCTGATTGTTGCAGATATAAGCTACTAATATATTTTGTTTATTCAAGTGTGCG ] [-] EMBL CB652111 [ CCACCACATACCGGCCTTCTTCCAAATGTCAATGAAGGAACTCCTCGAAAACAAGCATCCAACAGCATGGTCTGAATTTGAGATGGGTCTAATTGATGAGAATGAACTGGCCAAAAAGTTCTTCAATGATGGCAGGTCTTTTGATTTGGAAGGTTTGAAAGCATGCATGGTGAGGGCATATGAGTACATCGATGGTGTTGAAGACATTCTTTACAGTTTGAAGCAAAATAACTATGAAGTGCAT GCATTTACAAATTATCCAGTGTGGTACCAGTTAGTTGAGGAGAAGTTAAAGCTCTCAAAGTATTTGTCCTGGACATTCTGTTCATGCACAGTTGGTAAGCGCAAACCTTCGCCTGATTTTTATCTACATGCTGTGGACCACCTAAACGTTGATCCAGCAAGCTGCATATTCATTGATGACAGGATGACAAACATTGAAGCAGCCCTTAGTGTAGGAATGGTTGGTTTGCAATTTAAAAATGCTGAGGTGCTCAAGAAGGATTTATGCTCGCTTGGAGTTGAATTTGCA CCTGTGCATGAAGGTGAAATACAAGTCCAATAAGGTTGCACTTTGTTAACTCTTCTGCTCATGTGTATAAAATTCATATATCTGACCCTTCTGTCTTCTGAACCTTGTCAATAACATGAAGA CCCCTGATTGTTGCAAATATAAACTACTAATAAAGTTGGTTTATTCAAGTGT ] [+] EMBL BI803625 [ AATAACTATGAAGTGCATCGCATTTACCAATTATCCAGTGTGGTACCAGTTAGTTGAGGAGAAGTTAAAGCTCTCAAAGTATTTGTCCTGGACATTCTGTTCATGCACAGTTGGTAAGCGCAAACCTTCGCCTGATTTTTATCTACATGCTGTGGACCACCTAAACGTTGATCCAGCAAGCTGCATATTCATTGATGACAGGATGACCAACCTTGAAGCAGCCCTTAGTGTAGGAATGGTTGGTTTGCAATTTAAAAATGCTGAGGTGCTCAAGAAGGATTTATGCTCGCTTGGAGTTGAATTTGCACCCTGTGCATGAAGGTGAAATACAAGTCCCATAAGGTTGCACTTTGTTAACTCTTCTGCTCATGTGTATAAAATTCATATATCTGACCCTTCTGTCTTCTGAACCTTGTCAATAACATGAAGA CCCCTGATTGTT CAGATATAAACTACTAATATATTTTGTTTATTCAAaaaaaaaa ] [+] EMBL AK060426 [ ATGACAAACATTGAAGCAGCCCTTAGTGTAGGAATGGTTGGTTTGCAATTTAAAAATGCTGAGGTGCTCAAGAAGGATTTATGCTCGCTTGGAGTTGAATTTGCA CCTGTGCATGAAGGTGAAATACAAGTCCAATAAGGTTGCACTTTGTTAACTCTTCTGCTCATGTGTATAAAATTCATATATCTGACCCTTCTGTCTTCTGAACCTTGTCAATAACATGAAGA CCCCTGATTG ] [-] EMBL CA760728 [ GAAGACCCCCTGATTGTTGCAGATATAAACTACTAATATATTTTGTTTATTCAAGTGTGCGTATTCTCAAAGCATTCATTAGCTTCCATGTTTCCAACAAGTAAAGGTGAACAAAATACCAATGGCTTGGAATACATGCCAGTGCTTAATCAATAGAACTTTACCACAATCTCTGTTCAGGATAAAGATAAATCATCTTGAACTAACTTTAGGTTAAATTATTTATCTATCTAATACTAGACTAATCCAGACAAACTTGTGCTTGGATCAGGTGTAGCTCATGCACACGTTGTTAGCGCTTAAAAAATGGAAACATGGTTAGCGCTTAAAAAATCCAGAGTTAATTAAATGAGCCCCAGATTCAAGCATAGTAATTTGCTTAAAGCTAGGTAAAGAACAGCCTGAGCTAGCTGGCTTGAGCCAAAAAAGGATAGTTTTGAGGAACAAGAACAAACAGGCTCAATCATGTGTTAACTGTTAACTCAAAGCTTGATCAATAATCCATCAACTCAAAGCTGTGACTGCATTTTATTGGTTCAATAATCAAGATCCTAAGTAACTATGTTTTGTCAGAGTGATCGCCAATTAATATTCAAGGTCTTGCATTAAATTATAATGGATGATCATATGTATCTGTTATGCTTTCATAATTAAGAGTATCTCTGAAACTCCATGTTCCTCTCAAAAAAAAAAAA] consensusID : consensus_10231#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 740 fasta sequence [TGCTGCTGTTCGACGTCATGGACACCGTCGTCCGCGACCCCTTCTACCACCACATACCGGCCTTCTTCCAAATGTCAATGAAGGAACTCCTCGAAAACAAGCATCCAACAGCATGGTCTGAATTTGAGATGGGTCTAATTGATGAGAATGAACTGGCCAAAAAGTTCTTCAATGATGGCAGGTCTTTTGATTTGGAAGGTTTGAAAGCATGCATGGTGAGGGCATATGAGTACATCGATGGTGTTGAAGACATTCTTTACAGTTTGAAGCAAAATAACTATGAAGTGCATGCATTTACAAATTATCCAGTGTGGTACCAGTTAGTTGAGGAGAAGTTAAAGCTCTCAAAGTATTTGTCCTGGACATTCTGTTCATGCACAGTTGGTAAGCGCAAACCTTCGCCTGATTTTTATCTACATGCTGTGGACCACCTAAACGTTGATCCAGCAAGCTGCATATTCATTGATGACAGGATGACAAACATTGAAGCAGCCCTTAGTGTAGGAATGGTTGGTTTGCAATTTAAAAATGCTGAGGTGCTCAAGAAGGATTTATGCTCGCTTGGAGTTGAATTTGCACCTGTGCATGAAGGTGAAATACAAGTCCAATAAGGTTGCACTTTGTTAACTCTTCTGCTCATGTGTATAAAATTCATATATGGGACCCTTCTGTCTTCTGAACCTTGTCAATAACATGAAGACCCAGAGTGATTGAGAGAGAGAGAGAGTGAGAGGGAGAGA] [-] EMBL CB652110 [TGCTGCTGTTCGACGTCATGGACACCGTCGTCCGCGACCCCTTCTACCACCACATACCGGCCTTCTTCCAAATGTCAATGAAGGAACTCCTCGAAAACAAGCATCCAACAGCATGGTCTGAATTTGAGATGGGTCTAATTGATGAGAATGAACTGGCCAAAAAGTTCTTCAATGATGGCAGGTCTTTTGATTTGGAAGGTTTGAAAGCATGCATGGTGAGGGCATATGAGTACATCGATGGTGTTGAAGACATTCTTTACAGTTTGAAGCAAAATAACTATGAAGTGCATGCATTTACAAATTATCCAGTGTGGTACCAGTTAGTTGAGGAGAAGTTAAAGCTCTCAAAGTATTTGTCCTGGACATTCTGTTCATGCACAGTTGGTAAGCGCAAACCTTCGCCTGATTTTTATCTACATGCTGTGGACCACCTAAACGTTGATCCAGCAAGCTGCATATTCATTGATGACAGGATGACAAACATTGAAGCAGCCCTTAGTGTAGGAATGGTTGGTTTGCAATTTAAAAATGCTGAGGTGCTCAAGAAGGATTTATGCTCGCTTGGAGTTGAATTTGCACCTGTGCATGAAGGTGAAATACAAGTCCAATAAGGTTGCACTTTGTTAACTCTTCTGCTCATGTGTATAAAATTCATATATGGGACCCTTCTGTCTTCTGAACCTTGTCAATAACATGAAGACCCAGAGTGATTGAGAGAGAGAGAGAGTGAGAGGGAGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10231#0 CCGCACCATCTCTCCAGTCTCCATCCTTGATGGTCTCCTTGCTCCCCCGCGCGCCCTGCC 60 consensus_10231#1 ------------------------------------------------------------ consensus_10231#0 TCGCCTCCTCCATCCCCAAGCCCACCGCCCTTCGGCCGCCGTGCATGGCGTCCACATCCG 120 consensus_10231#1 ------------------------------------------------------------ consensus_10231#0 CCGCGGCCCCTGCCGCTGCAGCGGCGACGGCGGAGGCGTCCGCGTCCCGGCCGCCGAGGA 180 consensus_10231#1 ------------------------------------------------------------ consensus_10231#0 AGCTGCCGGTGCTGCTGTTCGACGTCATGGACACCGTCGTCCGCGACCCCTTCTACCACC 240 consensus_10231#1 ---------TGCTGCTGTTCGACGTCATGGACACCGTCGTCCGCGACCCCTTCTACCACC 51 *************************************************** consensus_10231#0 ACATACCGGCCTTCTTCCAAATGTCAATGAAGGAACTCCTCGAAAACAAGCATCCAACAG 300 consensus_10231#1 ACATACCGGCCTTCTTCCAAATGTCAATGAAGGAACTCCTCGAAAACAAGCATCCAACAG 111 ************************************************************ consensus_10231#0 CATGGTCTGAATTTGAGATGGGTCTAATTGATGAGAATGAACTGGCCAAAAAGTTCTTCA 360 consensus_10231#1 CATGGTCTGAATTTGAGATGGGTCTAATTGATGAGAATGAACTGGCCAAAAAGTTCTTCA 171 ************************************************************ consensus_10231#0 ATGATGGCAGGTCTTTTGATTTGGAAGGTTTGAAAGCATGCATGGTGAGGGCATATGAGT 420 consensus_10231#1 ATGATGGCAGGTCTTTTGATTTGGAAGGTTTGAAAGCATGCATGGTGAGGGCATATGAGT 231 ************************************************************ consensus_10231#0 ACATCGATGGTGTTGAAGACATTCTTTACAGTTTGAAGCAAAATAACTATGAAGTGCATG 480 consensus_10231#1 ACATCGATGGTGTTGAAGACATTCTTTACAGTTTGAAGCAAAATAACTATGAAGTGCATG 291 ************************************************************ consensus_10231#0 CATTTACAAATTATCCAGTGTGGTACCAGTTAGTTGAGGAGAAGTTAAAGCTCTCAAAGT 540 consensus_10231#1 CATTTACAAATTATCCAGTGTGGTACCAGTTAGTTGAGGAGAAGTTAAAGCTCTCAAAGT 351 ************************************************************ consensus_10231#0 ATTTGTCCTGGACATTCTGTTCATGCACAGTTGGTAAGCGCAAACCTTCGCCTGATTTTT 600 consensus_10231#1 ATTTGTCCTGGACATTCTGTTCATGCACAGTTGGTAAGCGCAAACCTTCGCCTGATTTTT 411 ************************************************************ consensus_10231#0 ATCTACATGCTGTGGACCACCTAAACGTTGATCCAGCAAGCTGCATATTCATTGATGACA 660 consensus_10231#1 ATCTACATGCTGTGGACCACCTAAACGTTGATCCAGCAAGCTGCATATTCATTGATGACA 471 ************************************************************ consensus_10231#0 GGATGACAAACATTGAAGCAGCCCTTAGTGTAGGAATGGTTGGTTTGCAATTTAAAAATG 720 consensus_10231#1 GGATGACAAACATTGAAGCAGCCCTTAGTGTAGGAATGGTTGGTTTGCAATTTAAAAATG 531 ************************************************************ consensus_10231#0 CTGAGGTGCTCAAGAAGGATTTATGCTCGCTTGGAGTTGAATTTGCACCTGTGCATGAAG 780 consensus_10231#1 CTGAGGTGCTCAAGAAGGATTTATGCTCGCTTGGAGTTGAATTTGCACCTGTGCATGAAG 591 ************************************************************ consensus_10231#0 GTGAAATACAAGTCCAATAAGGTTGCACTTTGTTAACTCTTCTGCTCATGTGTATAAAAT 840 consensus_10231#1 GTGAAATACAAGTCCAATAAGGTTGCACTTTGTTAACTCTTCTGCTCATGTGTATAAAAT 651 ************************************************************ consensus_10231#0 TCATATATCTGACCCTTCTGTCTTCTGAACCTTGTCAATAACATGAAGACCCCTGATTGT 900 consensus_10231#1 TCATATATGGGACCCTTCTGTCTTCTGAACCTTGTCAATAACATGAAGACCCAGAGTGAT 711 ******** ****************************************** * * consensus_10231#0 TGCAGATATAAACTACTAATATATTTTGTTTATTCAAGTGTGCGAATTCTCAAAGCATTC 960 consensus_10231#1 TGAGAGAGAGAGAGAGTGAGAGGGAGAGA------------------------------- 740 ** * * * * * * consensus_10231#0 ATTAGCTTCCATGTTTCCAACAAGTAAAGGTGAACAAAATACCAATGGCTTGGAATACAT 1020 consensus_10231#1 ------------------------------------------------------------ consensus_10231#0 GCCAGTGCTTAATCAATAGAACTTTACCACAATCTCTGTTCAGGATAAAGATAAATCATC 1080 consensus_10231#1 ------------------------------------------------------------ consensus_10231#0 TTGAACTAACTTTAGGTTAAATTATTTATCTATCTAATACTAGACTAATCCAGACAAACT 1140 consensus_10231#1 ------------------------------------------------------------ consensus_10231#0 TGTGCTTGGATCAGGTGTAGCTCATGCACACGTTGTTAGCGCTTAAAAAATGGAAACATG 1200 consensus_10231#1 ------------------------------------------------------------ consensus_10231#0 GTTAGCGCTTAAAAAATCCAGAGTTAATTAAATGAGCCCCAGATTCAAGCATAGTAATTT 1260 consensus_10231#1 ------------------------------------------------------------ consensus_10231#0 GCTTAAAGCTAGGTAAAGAACAGCCTGAGCTAGCTGGCTTGAGCCAAAAAAGGATAGTTT 1320 consensus_10231#1 ------------------------------------------------------------ consensus_10231#0 TGAGGAACAAGAACAAACAGGCTCAATCATGTGTTAACTGTTAACTCAAAGCTTGATCAA 1380 consensus_10231#1 ------------------------------------------------------------ consensus_10231#0 TAATCCATCAACTCAAAGCTGTGACTGCATTTTATTGGTTCAATAATCAAGATCCTAAGT 1440 consensus_10231#1 ------------------------------------------------------------ consensus_10231#0 AACTATGTTTTGTCAGAGTGATCGCCAATTAATATTCAAGGTCTTGCATTAAATTATAAT 1500 consensus_10231#1 ------------------------------------------------------------ consensus_10231#0 GGATGATCATATGTATCTGTTATGCTTTCATAATTAAGAGTATCTCTGAAACTCCATGTT 1560 consensus_10231#1 ------------------------------------------------------------ consensus_10231#0 CCTCTCAAAAAAAAAAAA 1578 consensus_10231#1 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||