These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10232#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 908 fasta sequence [TGCGTGCACCTCGGGTTCCGTTTCATCCCATTGCCCAAGGCTTGCTCCTTCGACCCCGTCGGCAAGTATGGCCGGCCTCACATGCCCGAGTTCCGTTCCATGGGCCGCGTCAACGGTGTCATCAGGTTGATCGACATGGAGGGTTTTACCAACGAGTACCTGGCCGTGGATGAGGTGAAGCTGACCATCTGGACCCTGTCAGCCGACCTCAGCGAGTGGGAGAAAGGCCCGGTGTGTACTGTAGGAGACATTTGGGCCAGTGAGGAATTCGTCGCCATGGGGTTGCCGCAGCTTAGACCGATGTGCCCTGTCCTGAGCA-TGGTTGACGAAGATGTCGTCTGTGTAGTCATGACTGAAGTCGAGATTGAGGAGAGCGATGTCACAGATTTCGACGATGAGGG--CAACAAGCTCAAGTTCAAGGCCCAGTACGTTCTTGACATCGACGTGCGGCGTAAGCGGGTGTTATCCATCACCCAGCACCACATTGAAAGTATGGGTGATCTTATACCAGATCTCATCGCCTGTGAGTT-CACTGCATACTTGGAGCTCTCAAAAGGCATGCA-G-GCAATGGTGGA-AGGAAATGAGGGTGAG-GAAAGCACAAAGCGGATGAAGGTTAAATGATCTCTGCATCATG-TGGAACTTCGATGGTTTTTGCAACATATCAAGTAGGATTA-ACATTGAAGATTGGTGTTTGATTAGCACCCATCTATGTGGAAGGATGAATGTGATGTAATCATTCTCTAGAAGTTATGATGTTATTATCAGAT-GGTAGTAAAACT-GAATTGCTA-G-TGTGTTTTGTTAACGC-TGAT-GTTTTAACATTACTTCATAGCTACCTTTGAATTGTCTGGTCATGCCGGGCTGGTTGATGGCTGACTCCGATNAGTGATACAAGNGGTACCTGATGATAT] [-] EMBL CB618468 [TGCGTGCACCTCGGGTTCCGTTTCATCCCATTGCCCAAGGCTTGCTCCTTCGACCCCGTCGGCAAGTATGGCCGGCCTCACATGCCCGAGTTCCGTTCCATGGGCCGCGTCAACGGTGTCATCAGGTTGATCGACATGGAGGGTTTTACCAACGAGTACCTGGCCGTGGATGAGGTGAAGCTGACCATCTGGACCCTGTCAGCCGACCTCAGCGAGTGGGAGAAAGGCCCGGTGTGTACTGTAGGAGACATTTGGGCCAGTGAGGAATTCGTCGCCATGGGGTTGCCGCAGCTTAGACCGATGTGCCCTGTCCTGAGCA TGGTTGACGAAGATGTCGTCTGTGTAGTCATGACTGAAGTCGAGATTGAGGAGAGCGATGTCACAGATTTCGACGATGAGGG CAACAAGCTCAAGTTCAAGGCCCAGTACGTTCTTGACATCGACGTGCGGCGTAAGCGGGTGTTATCCATCACCCAGCACCACATTGAAAGTATGGGTGATCTTATACCAGATCTCATCGCCTGTGAGTT CACTGCATACTTGGAGCTCTCAAAAGGCATGCA G GCAATGGTGGA AGGAAATGAGGGTGAG GAAAGCACAAAGCGGATGAAGGTTAAATGATCTCTGCATCATG TGGAACTTCGATGGTTTTTGCAACATATCAAGTAGGATTA ACATTGAAGATTGGTGTTTGATTAGCACCCATCTATGTGGAAGGATGAATGTGATGTAATCATTCTCTAGAAGTTATGATGTTATTATCAGAT GGTAGTAAAACTAGAAGGGCTA GNTGTGTTTTGTTAA ] [-] EMBL CB618427 [ CCGGCCTCACATGCCCGAGTTCCGTTCCATGGGCCGCGTCAACGGTGTCATCAGGTTGATCGACATGGAGGGTTTTACCAACGAGTACCTGGCCGTGGATGAGGTGAAGCTGACCATCTGGACCCTGTCAGCCGACCTCAGCGAGTGGGAGAAAGGCCCGGTGTGTACTGTAGGAGACATTTGGGCCAGTGAGGAATTCGTCGCCATGGGGTTGCCGCAGCTTAGACCGATGTGCCCTGTCCTGAGCA TGGTTGACGAAGATGTCGTCTGTGTAGTCATGACTGAAGTCGAGATTGAGGAGAGCGATGTCACAGATTTCGACGATGAGGG CAACAAGCTCAAGTTCAAGGCCCAGTACGTTCTTGACATCGACGTGCGGCGTAAGCGGGTGTTATCCATCACCCAGCACCACATTGAAAGTATGGGTGATCTTATACCAGATCTCATCGCCTGTGAGTT CACTGCATACTTGGAGCTCTCAAAAGGCATGCA G GCAATGGTGGA AGGAAATGAGGGTGAG GAAAGCACAAAGCGGATGAAGGTTAAATGATCTCTGCATCATG TGGAACTTCGATGGTTTTTGCAACATATCAAGTAGGATTA ACATTGAAGATTGGTGTTTGATTAGCACCCATCTATGTGGAAGGATGAATGTGATGTAATCATTCTCTAGAAGTTATGATGTTATTATCAGAT GGTAGTAAAACT GAATTGCTA G TGTGTTTTGTTAACGCGTGAT ] [+] EMBL CB096375 [ ggggGGACCCTGTCAGCCGACCTCAGCGAGTGGGAGAAAGGCCCGGTGTGTACTGTAGGAGACATTTGGGCCAGTGAGGAATTCGTCGCCATGGGGTTGCCGCAGCTTAGACCGATGTGCCCTGTCCTGAGCA TGGTTGACGAAGATGTCGTCTGTGTAGTCATGACTGAAGTCGAGATTGAGGAGAGCGATGTCACAGATTTCGACGATGAGGG CAACAAGCTCAAGTTCAAGGCCCAGTACGTTCTTGACATCGACGTGCGGCGTAAGCGGGTGTTATCCATCACCCAGCACCACATTGAAAGTATGGGTGATCTTATACCAGATCTCATCGCCTGTGAGTT CACTGCATACTTGGAGCTCTCAAAAGGCATGCA G GCAATGGTGGA AGGAAATGAGGGTGAG GAAAGCACAAAGCGGATGAAGGTTAAATGATCTCTGCATCATG TGGAACTTCGATGGTTTTTGCAACATATCAAGTAGGATTA ACACTGAAGATTGGTGTTTGATTAGCACCCATCTATGTGGAAGGATGAATGTGATGTAATCATTCTCTAGAAGTTATGATGTTATTATCAGAT GGTAGTAAAACT GAATTGCTA G TGTGTTTTGNTAACGC TGATGGTTTTAACATTACTTCATAGCTACCTTTGAATTGTCTGGTCATGCCGGGCTGGTTGATGGCTGACTCCGATNAGTGATACAAGNGGTACCTGATGATAT] [+] EMBL CB096732 [ GCTTAGACCGATGTGCCCTGTCCTGAGCA TGGTTGACGAAGATGTCGTCTGTGTAGTCNTGACTGAAGTCGAGATTGAGGAGAGCGATGTCACAGATTTCGACGATGAGGG CAACAAGCTCAAGTTCAAGGCCCAGTACGTTCTTGACATCGACGTGCGGNGNNAGCGGGTGTTATCCATCACCCAGCACCACATTGAAAGTATGGGTGATCTTATACCAGATCTCATCGCCTGTGAGTT CACTGCATACTTGGAGCTCTCAAAAGGCATGCA G GCAATGGTGGA AGGAAATGAGGGTGAG GAAAGCACAAAGCGGATGAAGGTTAAATGATCTCTGCATCATG TGGAACTTCGATGGGTTTTGCAACATATCAAGTAGGATTA ACATTGAAGATTGGNGGTTGATTAGCACCCATCTATGTGGAANGATGAATGGGATGTAATCATTCTCTANAAGGTATGATGGTATTATCAGATGGGTAGTAAAACT GAATTGCTAGG GGGGTTTTGTTACCGC TGAT GGGCTAACATTA ] [+] EMBL BI812072 [ AGCACTGGTT TCGAAGATGTCGTCTGTGTAGTCATGACTGAACTCGAGATTGAGGAGAGCGATGTCACAGATTTCGACGATGATGGTCCAACAAGCTCAAGTTCAAGGCCCAGTATGTTCTTGACATCGACGTGCGGCGTAACCGGGTGTTATCCATCACCCAGCACCACCTTGAAAGTATGGGTGATCTTATACCAGATCTCATCGCCTGTGAGTTCCCCTGCATACTCGGAGCTCTCAAAAGGCATGCACGCGCCATGGTGGATAGGAAATGAGGGTGAGCCAAAGCCCCAAGCCGATGAAGGTTAAATGATCTCTGCATCATGCTGGCACTTCGATGGTTTTTGCAACATATCAAGTAGGATTATACCTTGAAGATTGGTGTTTGATTAGCACCCATCTATGTGGAAGGATGAATGTGATGTAATCATTCTCTAGAAGTTATGATGTTATTATCAGAT GGTAGTAAAAaaaaaa ] consensusID : consensus_10232#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 832 fasta sequence [ACCACCGACTTGGTGTTCTCGTTCGGTGAATCGTGCCTGTGCTGGGCCGATCTGTTCATGGGCATCCTGTTCTGCGACCTTGCGACGCTGCGTGCACCTCGGTTCCGTTTCATCCCATTGCCCAAGGCTTGCTCCTTCGACCCCGTCGGCAAGTATGGCCGGCCTCACATGCCCGAGTTCCGTTCCATGGGCCGCGTCAACGGTGTCATCAGGTTGATCGACATGGAGGGTTTTACCAACGAGTACCTGGCCGTGGATGAGGTGAAGCTGACCATCTGGACCCTGTCAGCCGACCTCAGCGAGTGGGAGAAAGGCCCGGTGTGTACTGTAGGAGACATTTGGGCCAGTGAGGAATTCGTCGCCATGGGGTTGCCGCAGCTTAGACCGATGTGCCCTGTCCTGAGCATGGTTGACGAAGATGTCGTCTGTGTAGTCATGACTGAAGTCGAGATTGAGGAGAGCGATGTCACAGATTTCGACGATGAGGGCAACAAGCTCAAGTTCAAGGCCCAGTACGTTCTTGACATCGACGTGCGGCGTAAGCGGGTGTTATCCATCACCCAGCACCACATTGAAAGTATGGGTGATCTTATACCAGATCTCATCGCCTGTGAGTTCACTGCATACTTGGAGCTCTCAAAAGGCATGCAGGTATTACTACTACGACACCCAACATACTTAGTTATTTACTCACTTGAAGTATATTGTTCTGTTAACACAATAACACTTTCCACAGTTCTAATGCTTGGTTATCATGTCCAGTCAGTTACATCTTAGTATCTCACGAGTAACGGAGTAAGTATATTAGGCTAGTTATCCTACTGAACTGAAC] [+] EMBL CB628178 [ACCACCGACTTGGTGTTCTCGTTCGGTGAATCGTGCCTGTGCTGGGCCGATCTGTTCATGGGCATCCTGTTCTGCGACCTTGCGACGCTGCGTGCACCTCGGTTCCGTTTCATCCCATTGCCCAAGGCTTGCTCCTTCGACCCCGTCGGCAAGTATGGCCGGCCTCACATGCCCGAGTTCCGTTCCATGGGCCGCGTCAACGGTGTCATCAGGTTGATCGACATGGAGGGTTTTACCAACGAGTACCTGGCCGTGGATGAGGTGAAGCTGACCATCTGGACCCTGTCAGCCGACCTCAGCGAGTGGGAGAAAGGCCCGGTGTGTACTGTAGGAGACATTTGGGCCAGTGAGGAATTCGTCGCCATGGGGTTGCCGCAGCTTAGACCGATGTGCCCTGTCCTGAGCATGGTTGACGAAGATGTCGTCTGTGTAGTCATGACTGAAGTCGAGATTGAGGAGAGCGATGTCACAGATTTCGACGATGAGGGCAACAAGCTCAAGTTCAAGGCCCAGTACGTTCTTGACATCGACGTGCGGCGTAAGCGGGTGTTATCCATCACCCAGCACCACATTGAAAGTATGGGTGATCTTATACCAGATCTCATCGCCTGTGAGTTCACTGCATACTTGGAGCTCTCAAAAGGCATGCAGGTATTACTACTACGACACCCAACATACTTAGTTATTTACTCACTTGAAGTATATTGTTCTGTTAACACAATAACACTTTCCACAGTTCTAATGCTTGGTTATCATGTCCAGTCAGTTACATCTTAGTATCTCACGAGTAACGGAGTAAGTATATTAGGCTAGTTATCCTACTGAACTGAAC] consensusID : consensus_10232#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 795 fasta sequence [TGTGTGTTGGAAAAGAGATTTGTCTAACTAAAATTCTCTATGTAATAAGTATAGAATCGTATCCTCTGTACCATAGTATATGGAAATATCATGTGTAACGGTGTAAGGCCCTAACTGAGTTATGTTACTTTTCCTAGCTGGTACTCCCTCCATTTCACATTATAAGACTTTCTAGTATTGCAAACATTCATATATATGTTAATGAATCTAAACATGTGCTAAAAAGTCAACGGCGTCAAATATGTGTAGTAGATGTCCTAAGACTATCTAGGTTTCTCAATGATGAATTTTCATTTATATATATTTGGCCACATATTAATTTCCTGTCTAGCTCTGTTAATTGTAACTTTGGTATGCACTGAGGGAATTATTGAAGTGGATTAAGAACCATTAGGCCATTTTAAATTTGTCTAGTTTGACATACATTAATTTGTTTCTGCTAGGCAATGGTGGAAGGAAATGAGGGTGAGGAAAGCACAAAGCGGATGAAGGTTAAATGATCTCTGCATCATGTGGAACTTCGATGGTTTTTGCAACATATCAAGTAGGATTAACATTGAAGATTGGTGTTTGATTAGCACCCATCTATGTGGAAGGATGAATGTGATGTAATCATTCTCTAGAAGTTATGATGTTATTATCAGATGGTAGTAAAACTGAATTGCTAGTGTGTTTTGTTAACGCTGATGGTTTTAACATTACTTCATAGCTACCTTTGAATTGTCTGGTCATGCCGGGCTGGTTGATGGCTGACTCCGATAGAGTGATACAAGTGGTACCTGATGATATCTTTTG] [-] EMBL CB628179 [TGTGTGTTGGAAAAGAGATTTGTCTAACTAAAATTCTCTATGTAATAAGTATAGAATCGTATCCTCTGTACCATAGTATATGGAAATATCATGTGTAACGGTGTAAGGCCCTAACTGAGTTATGTTACTTTTCCTAGCTGGTACTCCCTCCATTTCACATTATAAGACTTTCTAGTATTGCAAACATTCATATATATGTTAATGAATCTAAACATGTGCTAAAAAGTCAACGGCGTCAAATATGTGTAGTAGATGTCCTAAGACTATCTAGGTTTCTCAATGATGAATTTTCATTTATATATATTTGGCCACATATTAATTTCCTGTCTAGCTCTGTTAATTGTAACTTTGGTATGCACTGAGGGAATTATTGAAGTGGATTAAGAACCATTAGGCCATTTTAAATTTGTCTAGTTTGACATACATTAATTTGTTTCTGCTAGGCAATGGTGGAAGGAAATGAGGGTGAGGAAAGCACAAAGCGGATGAAGGTTAAATGATCTCTGCATCATGTGGAACTTCGATGGTTTTTGCAACATATCAAGTAGGATTAACATTGAAGATTGGTGTTTGATTAGCACCCATCTATGTGGAAGGATGAATGTGATGTAATCATTCTCTAGAAGTTATGATGTTATTATCAGATGGTAGTAAAACTGAATTGCTAGTGTGTTTTGTTAACGCTGATGGTTTTAACATTACTTCATAGCTACCTTTGAATTGTCTGGTCATGCCGGGCTGGTTGATGGCTGACTCCGATAGAGTGATACAAGTGGTACCTGATGATATCTTTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10232#0 ------------------------------------------------------------ consensus_10232#1 ACCACCGACTTGGTGTTCTCGTTCGGTGAATCGTGCCTGTGCTGGGCCGATCTGT-TCAT 59 consensus_10232#2 -----------TGTGTGTTGGAAAAGAGATTTGT--CTA-ACTAAAATTCTCTATGTAAT 46 consensus_10232#0 ------------------------------TGCGTGCACCTCGGGTTCCGTTTCATCCCA 30 consensus_10232#1 GGGCATCCTGTTCTGCGACCT-TGCGACGCTGCGTGCACCTCGG-TTCCGTTTCATCCCA 117 consensus_10232#2 AAGTATAGAATCGTATCCTCTGTACCATAGTATATGGAAATATC-ATGTGTAACGGTGTA 105 * ** * * * ** * * consensus_10232#0 TTGCCCAAGGCTTGCTCCTTCGACCCCGTCGGCAAGTATGGCCGGCCTCACATGCCCGAG 90 consensus_10232#1 TTGCCCAAGGCTTGCTCCTTCGACCCCGTCGGCAAGTATGGCCGGCCTCACATGCCCGAG 177 consensus_10232#2 AGGCCCTAACTGAGTTATGTTACTTTTCCTAGCTGGTACTCCCTCCATTTCACATTATAA 165 **** * * * * ** *** ** * * ** * consensus_10232#0 TTCCGTTCCATGGGCCGCGTCAACGGTGTCAT-CAGGTTGATCGACATGGAGGGTTTTAC 149 consensus_10232#1 TTCCGTTCCATGGGCCGCGTCAACGGTGTCAT-CAGGTTGATCGACATGGAGGGTTTTAC 236 consensus_10232#2 GAC--TTTCTAGTATTGCA--AACATTCATATATATGTTAATGAATCTAAACA--TGTGC 219 * ** * * ** *** * ** * *** ** * * * * * * consensus_10232#0 CAACGAGTACCTGGCCGTGGATGAGGTGAAGCTGACCATCTGGACCCTGTCAGCCGACCT 209 consensus_10232#1 CAACGAGTACCTGGCCGTGGATGAGGTGAAGCTGACCATCTGGACCCTGTCAGCCGACCT 296 consensus_10232#2 TAAAAAGTCAACGGC-GTCAAATATGTGTAGTAGAT-GTCCTAAGACTATCTAGGTTTCT 277 ** *** *** ** * * *** ** ** ** * ** ** ** consensus_10232#0 CAGCGAGTGGGAGAAAGGCCCGGTGTGTACTGTAGGAGACATTTGGG---CCAGTGAGGA 266 consensus_10232#1 CAGCGAGTGGGAGAAAGGCCCGGTGTGTACTGTAGGAGACATTTGGG---CCAGTGAGGA 353 consensus_10232#2 CAATGAT-----GAATTTTCATTTATATATATTTGGCCACATATTAATTTCCTGTCTAGC 332 ** ** *** * * * ** * ** **** * ** ** * consensus_10232#0 ATTCGTCGCCATGGGGTTGCCGCAGCTTAGACCGATG--TGCCCTGTCCTGAGCATGGTT 324 consensus_10232#1 ATTCGTCGCCATGGGGTTGCCGCAGCTTAGACCGATG--TGCCCTGTCCTGAGCATGGTT 411 consensus_10232#2 TCTGTTAATTGTAACTTTGGTATGCACTGAGGGAATTATTGAAGTGGATTAAGAACCATT 392 * * * *** * ** ** ** * ** * ** consensus_10232#0 GACGAAGATGTCGTCTGTGTAGTCATGACTGAAGTCGA---GATTGAGGAGAGCGATG-T 380 consensus_10232#1 GACGAAGATGTCGTCTGTGTAGTCATGACTGAAGTCGA---GATTGAGGAGAGCGATG-T 467 consensus_10232#2 AGGCCATTTTAAATTTGTCTAGTT-TGACATACATTAATTTGTTTCTGCTAGGCAATGGT 451 * * * *** **** **** * * * * ** * ** *** * consensus_10232#0 CACAGATTTCGACGATGAGGGCAACAAGCTCAAGTTCAAGGCCCAGTACGTTCTTGACAT 440 consensus_10232#1 CACAGATTTCGACGATGAGGGCAACAAGCTCAAGTTCAAGGCCCAGTACGTTCTTGACAT 527 consensus_10232#2 GGAAGGAAATGAGGGTGAGGAAAGCACAAAGCGGATGAAGGTTAAAT--GATCTCTGCAT 509 ** ** * ***** * ** * * **** * * * *** *** consensus_10232#0 CGACGTGCGGCGTAAGCGGGTGTT---ATCCATCACCCAGCACCA-CATTGAAAGTATGG 496 consensus_10232#1 CGACGTGCGGCGTAAGCGGGTGTT---ATCCATCACCCAGCACCA-CATTGAAAGTATGG 583 consensus_10232#2 C-ATGTGGAACTTCGATGGTTTTTGCAACATATCAAGTAGGATTAACATTGAAG--ATTG 566 * * *** * * ** * ** * **** ** * * ******* ** * consensus_10232#0 GTGATCTTATACCAGATCTCATCGCCTGTGAGTTCACTGCATACTTGGAGCTCTCAAAAG 556 consensus_10232#1 GTGATCTTATACCAGATCTCATCGCCTGTGAGTTCACTGCATACTTGGAGCTCTCAAAAG 643 consensus_10232#2 GTGTTTGATTAGCACCCATCTATGTGGAAGGATGAATGTGATGTAATCATTCTCTAGAAG 626 *** * ** ** ** * * * * ** * * *** consensus_10232#0 GCATGCAGGCAATGGTGGAAGGAAATGAGGGTGAGGAAAGCACAAAGCGGATGAAGGTTA 616 consensus_10232#1 GCATGCAGGTATTACTACTACGACACCCAACATACTTAGTTATTTACTCACTTGAAGTAT 703 consensus_10232#2 TTATGATGTTATTATCAGATGGTAGTAAAACTGAATTGCTAGTGTGTTTTGTTAACGCTG 686 *** * * * * * * * * consensus_10232#0 AATGATCTCTGCATCATGTGGAACTTCGATGGTTTTTGCAACATATCAAGTAGGATTAAC 676 consensus_10232#1 ATTGTTCTGT--------TAACACAATAACACTTTCCACAGT-TCTAATGCTTGGTTATC 754 consensus_10232#2 ATGGTTTT-----------AACATTACTTCA-TAGCTACCTT-TGAATTGTCTGGT---C 730 * * * * * * * * * * * * consensus_10232#0 ATTGAAGATTGGTGTTTGATTAGCACC-CATCTATGTGGAAGGATGAATGTGATG-TAAT 734 consensus_10232#1 ATGTCCAGTCAGTTACATCTTAGTATCTCACGAGTAACGGAGTAAGTATATTAGGCTAGT 814 consensus_10232#2 ATGCCGGGCTGGTTGATGGCTGACTCCGATAGAGTGATACAAGTGGTACCTGATGATATC 790 ** ** * * * * * * * * * ** consensus_10232#0 CATTCTCTAGAAGTTATGATGTTATTATCAGATGGTAGTAAAACTGAATTGCTAGTGTGT 794 consensus_10232#1 TATCCTACTGAACTGAAC------------------------------------------ 832 consensus_10232#2 TTTTG------------------------------------------------------- 795 * consensus_10232#0 TTTGTTAACGCTGATGTTTTAACATTACTTCATAGCTACCTTTGAATTGTCTGGTCATGC 854 consensus_10232#1 ------------------------------------------------------------ consensus_10232#2 ------------------------------------------------------------ consensus_10232#0 CGGGCTGGTTGATGGCTGACTCCGATNAGTGATACAAGNGGTACCTGATGATAT 908 consensus_10232#1 ------------------------------------------------------ consensus_10232#2 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||