These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10235#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 2011 fasta sequence [CAAAACAGAGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGAGGAGGAGGAGGAGCACGCGTTCTTCGCCTCGCCTCTCTCGCCTCACGGGAGGAGAGGAGGAGGGCGATTCGGAGGAGGGCGGTTGCCTTTGATCCCATTCCCCTCCCCCATCTTCTCCCCCGGGTTCGGATTCGGTCGGTCGGTTGGTTGATCCGCAACCGATCGATCGAGGGGGGGTGGCACTCGCGGATCCTCTCGTGTTCTTCCTCCAGTGCGCTGATCTGGACACGGCGCGATTTATAGTCTATCGGCCAGATCACAAAGTTTTTCCTCGCCGTACATTCAAAAGCTTTCTCTGAAGACTTTCTACATTCTGAAGATTATATTGGGAATAACATTTTAACATGAAGGCCGATCGGTTAATGTTGTCCAATCTCGACCATGATTTGGGATACCTACACAAGTTTCCCTCAGATTTTCCAATGTCTCATGATCTTGGGTTGAGCTTGTTTACGCATGCCGGTACAATGGTGGGAAGTTCTTTGCGACAGCACAGGCAGATCTGTTCTTCAGGAAATTTGATTGTTCAGGAAGCATTTGATCGCCTCAACAAGTTTGCCAGAGCTTTCTGCTACTGGCTTTCTAGAGTGTCTAATCCCAAGAATTTACGTAGGCTAATGAGTATGGAAGGCCCTAGCTCTGGAGCTTGCCAGTCACATATCAATCATTTGAGCTCCCGTATGCAAAATTTGGCTGTATTGCAGTTTGGTTATCTAGTAAGAGAAGAGCATGCTGTACAACTGCTTTTAGCTAACTTCGCAAGCACAACACTTGGGCGACTCTGGAATGATTTTCAGCAGCAACATGCCTGCAATGTTCTTACTCTGGCTGGTGCCATGGCTATTGTACCCCCTCTTGAAAATATATCACTGAAGACGCTCGCAGAGTCAATGGCACTGGGAAATATCAAGGACTATGTCAGCAGACCTATGGATAAGCCTTATCTGGAGGACAAATGCATAAAAAGTAGATCTGTTGCAGTGCCAAGCACAATATTTCAGGGAGATGCAATTGAACCAAAAACTGGAATCAAGTTTCCTGCATTTCTCGAAGATGACTCCAGTCCATCTACAACGGTCCTTGTTGGGATGGGTTTCAAAGGTGTGAAAGTAATGAGGGTCAAAAATTTGGATCTGTACGCTTTTGGTTTATATCTGCAACCGAATACTATTTCTGAGAAGCTGGGACCTAAGTATGCTTCTGTTCCAACCATCAACTTGAAGGACAACCCAGATTTCTATGATGATCTTTTGAGGGAAAACCTTCCTATGAGAGTTAGATTGGTACTTCACTACAACGGCCTTAGCATTGGTGCAGTGCGAGATGTATTTGAGAAGTCACTTGGCCTGCGCCTCCAGAAGATGAATCCCAACACTGATTATCATTGCTTGAAAACTTTTGGTTCTTACTTCAATGAAGACATTCCTATTCCTGCGGGTACAAAGATCGACTTCTGCCAAACTTCTGATGGCCAGCTAATAACAGAAATTGATGGCAGACAAATTGGTGCTGTTAAGAGCAAAGACCTCTGCAGGGCTCTGTTCGGTATGTACATTGGCGATTCACCGGTCTCATTGCAGGCCAAAAAAGATATTGCCCAAAACGTAGCCGGGCTCATAGGTAAATGCTGAAGAAACTGGAAACCAAACGCAGCTAGTCGGCCAATTATT--ATTCTTCTATACAGTAAGAAGAGGAAGCACACATTGAAGAGATTAGGCGAGGATCATAGTATGTATATACATCGAGAGATCTGTAACTTGTAAAGTGAAAAAAGAAAAAGCAAAATCGTAATGTACATATGGAAGATTAGCATCTGTTTACGGCGCAAGGGCACCCATTCCTTTTTCTATGTGGATGGATGGACCCTCTGCCATTTCATACACAGGAGTGACAGGTTGTATAGTACATGAGAAATTCAGATGCCTCTTCCATGAGTATAATACAAGTTCTCAAATCTTTTTTGCCC] [+] EMBL AK121461 [CAAAACAGAGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGAGGAGGAGGAGGAGCACGCGTTCTTCGCCTCGCCTCTCTCGCCTCACGGGAGGAGAGGAGGAGGGCGATTCGGAGGAGGGCGGTTGCCTTTGATCCCATTCCCCTCCCCCATCTTCTCCCCCGGGTTCGGATTCGGTCGGTCGGTTGGTTGATCCGCAACCGATCGATCGAGGGGGGGTGGCACTCGCGGATCCTCTCGTGTTCTTCCTCCAGTGCGCTGATCTGGACACGGCGCGATTTATAGTCTATCGGCCAGATCACAAAGTTTTTCCTCGCCGTACATTCAAAAGCTTTCTCTGAAGACTTTCTACATTCTGAAGATTATATTGGGAATAACATTTTAACATGAAGGCCGATCGGTTAATGTTGTCCAATCTCGACCATGATTTGGGATACCTACACAAGTTTCCCTCAGATTTTCCAATGTCTCATGATCTTGGGTTGAGCTTGTTTACGCATGCCGGTACAATGGTGGGAAGTTCTTTGCGACAGCACAGGCAGATCTGTTCTTCAGGAAATTTGATTGTTCAGGAAGCATTTGATCGCCTCAACAAGTTTGCCAGAGCTTTCTGCTACTGGCTTTCTAGAGTGTCTAATCCCAAGAATTTACGTAGGCTAATGAGTATGGAAGGCCCTAGCTCTGGAGCTTGCCAGTCACATATCAATCATTTGAGCTCCCGTATGCAAAATTTGGCTGTATTGCAGTTTGGTTATCTAGTAAGAGAAGAGCATGCTGTACAACTGCTTTTAGCTAACTTCGCAAGCACAACACTTGGGCGACTCTGGAATGATTTTCAGCAGCAACATGCCTGCAATGTTCTTACTCTGGCTGGTGCCATGGCTATTGTACCCCCTCTTGAAAATATATCACTGAAGACGCTCGCAGAGTCAATGGCACTGGGAAATATCAAGGACTATGTCAGCAGACCTATGGATAAGCCTTATCTGGAGGACAAATGCATAAAAAGTAGATCTGTTGCAGTGCCAAGCACAATATTTCAGGGAGATGCAATTGAACCAAAAACTGGAATCAAGTTTCCTGCATTTCTCGAAGATGACTCCAGTCCATCTACAACGGTCCTTGTTGGGATGGGTTTCAAAGGTGTGAAAGTAATGAGGGTCAAAAATTTGGATCTGTACGCTTTTGGTTTATATCTGCAACCGAATACTATTTCTGAGAAGCTGGGACCTAAGTATGCTTCTGTTCCAACCATCAACTTGAAGGACAACCCAGATTTCTATGATGATCTTTTGAGGGAAAACCTTCCTATGAGAGTTAGATTGGTACTTCACTACAACGGCCTTAGCATTGGTGCAGTGCGAGATGTATTTGAGAAGTCACTTGGCCTGCGCCTCCAGAAGATGAATCCCAACACTGATTATCATTGCTTGAAAACTTTTGGTTCTTACTTCAATGAAGACATTCCTATTCCTGCGGGTACAAAGATCGACTTCTGCCAAACTTCTGATGGCCAGCTAATAACAGAAATTGATGGCAGACAAATTGGTGCTGTTAAGAGCAAAGACCTCTGCAGGGCTCTGTTCGGTATGTACATTGGCGATTCACCGGTCTCATTGCAGGCCAAAAAAGATATTGCCCAAAACGTAGCCGGGCTCATAGGTAAATGCTGAAGAAACTGGAAACCAAACGCAGCTAGTCGGCCAATTATT ATTCTTCTATACAGTAAGAAGAGGAAGCACACATTGAAGAGATTAGGCGAGGATCATAGTATGTATATACATCGAGAGATCTGTAACTTGTAAAGTGAAAAAAGAAAAAGCAAAATCGTAATGTACATATGGAAGATTAGCATCTGTTTACGGCGCAAGGGCACCCATTCCTTTTTCTATGTGGATGGATGGACCCTCTGCCATTTCATACACAGGAGTGACAGGTTGTATAGTACATGAGAAATTCAGATGCCTCTTCCATGAGTATAATACAAGTTCTCAAAT ] [+] EMBL CF304921 [ TTTGCGACAGCACAGGCAGATCTGTTCTTCAGGAAATTTGATTGTTCAGGAAGCATTTGATCGCCTCAACAAGTTTGCCAGAGCTTTCTGCTACTGGCTTTCTAGAGTGTCTAATCCCAAGAATTTACGTAGGCTAATGAGTATGGAAGGCCCTAGCTCTGGAGCTTGCCAGTCACATATCAATCATTTGAGCTCCCGTATGCAAAATTTGGCTGTATTGCAGTTTGGTTATCTAGTAAGAGAAGAGCATGCTGTACAACTGCTTTTAGCTAACTTCGCAAGCACAACACTTGGGCGACTCTGGAATGATTTTCAGCAGCAACATGCCTGCAATGTTCTTACTCTGGCTGGTGCCATGGCTATTGTACCCCCTCTTGAAAATATATCACTGAAGACGCTCGCAGAGTCAATGGCACTGGGAAATATCAAGGACTATGTCAGCAGACCTATGGATAAGCCTTATCTGGAGGACAAAT ] [+] EMBL CF589250 [ AAGAATTTACGTAGGCTAATGAGTATGGAAGGCCCTAGCTCTGGAGCTTGCCAGTCACATATCAATCATTTGAGCTCCCGTATGCAAAATTTGGCTGTATTGCAGTTTGGTTATCTAGTAAGAGAAGAGCATGCTGTACAACTGCTTTTAGCTAACTTCGCAAGCACAACACTTGGGCGACTCTGGAATGATTTTCAGCAGCAACATGCCTGCAATGTTCTTACTCTGGCTGGTGCCATGGCTAT ] [+] EMBL BF889469 [ TCGACTTCTGCCAAACTTCTGATGGCCAGCTAATAACAGAAATTGATGGCAGACAAATTGGTGCTGTTAAGAGCAAAGACCTCTGCAGGGCTCTGTT ] [+] EMBL AU165612 [ AAAAGATATTGCCCAAAACGTAGCCGGGCTCATAGGTAAATGCTGAAGAAACTGGAAACCAAACGCAGCTAGTCGGCCAATTATTTCATTCTTCTATACAGTAAGAAGAGGAAGCACACATTGAAGAGATTAGGCGAGGNTCATAGTATGTATATACATCGAGAGATCTGTAACTTGTAAAGTGAAAAAAGAAAAAGCAAAATCGTAATGTACATATGGAAGATTAGCATCTGTTTACGGCGCAAGGGCACCCATTCCTTTTTCTATGTGGATGGATGGACCCTCTGCCATTTCATACACAGGAGTGACAGGTTGTATAGTACATGAGGAATTCAGATGCCTCTTCCATGAGTATAATACAAGTNCTCAAATCTTTTTTGCCC] [+] EMBL AU165767 [ AACTTGTAAAGTGAAAAAAGAAAAAGCAAAATCGTAATGTACATATGGAAGATTAGCATCTGTTTACGGCGCAAGGGCACCCATTCCTTTTTCTATGTGGATGGATGGACCCTCTGCCATTTCATACACAGGAGTGACAGGTTGTATAGTACATGAGAAATTCAGATGCCTCTTCCATGAGTATAATACAAGTTCTCAAAaa ] consensusID : consensus_10235#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence [ATTGGTACTTCACTACAACGGCCTTAGCATTGGTGCAGTGCGAGATGTATTTGAGAAGTCACTTGGCCTGCGCCTCCAGAAGATGAATCCCAACACTGATTATCATTGCTTGAAAACTTTTGGTTCTTACTTCAATGAAGACATTCCTATTCCTGCGGGTACAAAGATCGACTTTTGCCAAACTTTTGATGGCCAGCTAATAACAGAAATTGATGGCAGACAAATTGGTGCTGTTAAGAGCAAAGACCTTTGCAGGGCTCTGTTCGGTATGTACATTGGCGATTCACCGGTCTCATTGCAGGCCAAAAAAAGATATTGCCCAAAACGTAGCCGGGCTCATAGGTAAATGCTGAAGAAACTGGAAACCGAACGCAGCTAGTCGGCCAATTATTTCATTTTTCTATCCAGTAAGAAGAGGAAGCCCCCATTGAAGAGATTAGGCGAGGATCATAGTATGTATATACATCGAGAGATCTGTAACTTGTAAAGTGAAAAAAGAAAAAGCAAAATCGTAATGTACATATGGAAGATTAGCATCTGTTTACGGCGCAAGGGCACCCATTCCTTTTCCTATGTGGATGGATGGACCCTTTGCCATTTCATACACAGGAGTGACAGGTTGTATAGTACATGAGAAATTCAGATGCCTCTTCCATGAGTATAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA762154 [ATTGGTACTTCACTACAACGGCCTTAGCATTGGTGCAGTGCGAGATGTATTTGAGAAGTCACTTGGCCTGCGCCTCCAGAAGATGAATCCCAACACTGATTATCATTGCTTGAAAACTTTTGGTTCTTACTTCAATGAAGACATTCCTATTCCTGCGGGTACAAAGATCGACTTTTGCCAAACTTTTGATGGCCAGCTAATAACAGAAATTGATGGCAGACAAATTGGTGCTGTTAAGAGCAAAGACCTTTGCAGGGCTCTGTTCGGTATGTACATTGGCGATTCACCGGTCTCATTGCAGGCCAAAAAAAGATATTGCCCAAAACGTAGCCGGGCTCATAGGTAAATGCTGAAGAAACTGGAAACCGAACGCAGCTAGTCGGCCAATTATTTCATTTTTCTATCCAGTAAGAAGAGGAAGCCCCCATTGAAGAGATTAGGCGAGGATCATAGTATGTATATACATCGAGAGATCTGTAACTTGTAAAGTGAAAAAAGAAAAAGCAAAATCGTAATGTACATATGGAAGATTAGCATCTGTTTACGGCGCAAGGGCACCCATTCCTTTTCCTATGTGGATGGATGGACCCTTTGCCATTTCATACACAGGAGTGACAGGTTGTATAGTACATGAGAAATTCAGATGCCTCTTCCATGAGTATAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10235#0 CAAAACAGAGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGAGGAGGAGGAGGAGCA 60 consensus_10235#1 ------------------------------------------------------------ consensus_10235#0 CGCGTTCTTCGCCTCGCCTCTCTCGCCTCACGGGAGGAGAGGAGGAGGGCGATTCGGAGG 120 consensus_10235#1 ------------------------------------------------------------ consensus_10235#0 AGGGCGGTTGCCTTTGATCCCATTCCCCTCCCCCATCTTCTCCCCCGGGTTCGGATTCGG 180 consensus_10235#1 ------------------------------------------------------------ consensus_10235#0 TCGGTCGGTTGGTTGATCCGCAACCGATCGATCGAGGGGGGGTGGCACTCGCGGATCCTC 240 consensus_10235#1 ------------------------------------------------------------ consensus_10235#0 TCGTGTTCTTCCTCCAGTGCGCTGATCTGGACACGGCGCGATTTATAGTCTATCGGCCAG 300 consensus_10235#1 ------------------------------------------------------------ consensus_10235#0 ATCACAAAGTTTTTCCTCGCCGTACATTCAAAAGCTTTCTCTGAAGACTTTCTACATTCT 360 consensus_10235#1 ------------------------------------------------------------ consensus_10235#0 GAAGATTATATTGGGAATAACATTTTAACATGAAGGCCGATCGGTTAATGTTGTCCAATC 420 consensus_10235#1 ------------------------------------------------------------ consensus_10235#0 TCGACCATGATTTGGGATACCTACACAAGTTTCCCTCAGATTTTCCAATGTCTCATGATC 480 consensus_10235#1 ------------------------------------------------------------ consensus_10235#0 TTGGGTTGAGCTTGTTTACGCATGCCGGTACAATGGTGGGAAGTTCTTTGCGACAGCACA 540 consensus_10235#1 ------------------------------------------------------------ consensus_10235#0 GGCAGATCTGTTCTTCAGGAAATTTGATTGTTCAGGAAGCATTTGATCGCCTCAACAAGT 600 consensus_10235#1 ------------------------------------------------------------ consensus_10235#0 TTGCCAGAGCTTTCTGCTACTGGCTTTCTAGAGTGTCTAATCCCAAGAATTTACGTAGGC 660 consensus_10235#1 ------------------------------------------------------------ consensus_10235#0 TAATGAGTATGGAAGGCCCTAGCTCTGGAGCTTGCCAGTCACATATCAATCATTTGAGCT 720 consensus_10235#1 ------------------------------------------------------------ consensus_10235#0 CCCGTATGCAAAATTTGGCTGTATTGCAGTTTGGTTATCTAGTAAGAGAAGAGCATGCTG 780 consensus_10235#1 ------------------------------------------------------------ consensus_10235#0 TACAACTGCTTTTAGCTAACTTCGCAAGCACAACACTTGGGCGACTCTGGAATGATTTTC 840 consensus_10235#1 ------------------------------------------------------------ consensus_10235#0 AGCAGCAACATGCCTGCAATGTTCTTACTCTGGCTGGTGCCATGGCTATTGTACCCCCTC 900 consensus_10235#1 ------------------------------------------------------------ consensus_10235#0 TTGAAAATATATCACTGAAGACGCTCGCAGAGTCAATGGCACTGGGAAATATCAAGGACT 960 consensus_10235#1 ------------------------------------------------------------ consensus_10235#0 ATGTCAGCAGACCTATGGATAAGCCTTATCTGGAGGACAAATGCATAAAAAGTAGATCTG 1020 consensus_10235#1 ------------------------------------------------------------ consensus_10235#0 TTGCAGTGCCAAGCACAATATTTCAGGGAGATGCAATTGAACCAAAAACTGGAATCAAGT 1080 consensus_10235#1 ------------------------------------------------------------ consensus_10235#0 TTCCTGCATTTCTCGAAGATGACTCCAGTCCATCTACAACGGTCCTTGTTGGGATGGGTT 1140 consensus_10235#1 ------------------------------------------------------------ consensus_10235#0 TCAAAGGTGTGAAAGTAATGAGGGTCAAAAATTTGGATCTGTACGCTTTTGGTTTATATC 1200 consensus_10235#1 ------------------------------------------------------------ consensus_10235#0 TGCAACCGAATACTATTTCTGAGAAGCTGGGACCTAAGTATGCTTCTGTTCCAACCATCA 1260 consensus_10235#1 ------------------------------------------------------------ consensus_10235#0 ACTTGAAGGACAACCCAGATTTCTATGATGATCTTTTGAGGGAAAACCTTCCTATGAGAG 1320 consensus_10235#1 ------------------------------------------------------------ consensus_10235#0 TTAGATTGGTACTTCACTACAACGGCCTTAGCATTGGTGCAGTGCGAGATGTATTTGAGA 1380 consensus_10235#1 ----ATTGGTACTTCACTACAACGGCCTTAGCATTGGTGCAGTGCGAGATGTATTTGAGA 56 ******************************************************** consensus_10235#0 AGTCACTTGGCCTGCGCCTCCAGAAGATGAATCCCAACACTGATTATCATTGCTTGAAAA 1440 consensus_10235#1 AGTCACTTGGCCTGCGCCTCCAGAAGATGAATCCCAACACTGATTATCATTGCTTGAAAA 116 ************************************************************ consensus_10235#0 CTTTTGGTTCTTACTTCAATGAAGACATTCCTATTCCTGCGGGTACAAAGATCGACTTCT 1500 consensus_10235#1 CTTTTGGTTCTTACTTCAATGAAGACATTCCTATTCCTGCGGGTACAAAGATCGACTTTT 176 ********************************************************** * consensus_10235#0 GCCAAACTTCTGATGGCCAGCTAATAACAGAAATTGATGGCAGACAAATTGGTGCTGTTA 1560 consensus_10235#1 GCCAAACTTTTGATGGCCAGCTAATAACAGAAATTGATGGCAGACAAATTGGTGCTGTTA 236 ********* ************************************************** consensus_10235#0 AGAGCAAAGACCTCTGCAGGGCTCTGTTCGGTATGTACATTGGCGATTCACCGGTCTCAT 1620 consensus_10235#1 AGAGCAAAGACCTTTGCAGGGCTCTGTTCGGTATGTACATTGGCGATTCACCGGTCTCAT 296 ************* ********************************************** consensus_10235#0 TGCAGGCCAAAAAA-GATATTGCCCAAAACGTAGCCGGGCTCATAGGTAAATGCTGAAGA 1679 consensus_10235#1 TGCAGGCCAAAAAAAGATATTGCCCAAAACGTAGCCGGGCTCATAGGTAAATGCTGAAGA 356 ************** ********************************************* consensus_10235#0 AACTGGAAACCAAACGCAGCTAGTCGGCCAATTATT--ATTCTTCTATACAGTAAGAAGA 1737 consensus_10235#1 AACTGGAAACCGAACGCAGCTAGTCGGCCAATTATTTCATTTTTCTATCCAGTAAGAAGA 416 *********** ************************ *** ****** *********** consensus_10235#0 GGAAGCACACATTGAAGAGATTAGGCGAGGATCATAGTATGTATATACATCGAGAGATCT 1797 consensus_10235#1 GGAAGCCCCCATTGAAGAGATTAGGCGAGGATCATAGTATGTATATACATCGAGAGATCT 476 ****** * *************************************************** consensus_10235#0 GTAACTTGTAAAGTGAAAAAAGAAAAAGCAAAATCGTAATGTACATATGGAAGATTAGCA 1857 consensus_10235#1 GTAACTTGTAAAGTGAAAAAAGAAAAAGCAAAATCGTAATGTACATATGGAAGATTAGCA 536 ************************************************************ consensus_10235#0 TCTGTTTACGGCGCAAGGGCACCCATTCCTTTTTCTATGTGGATGGATGGACCCTCTGCC 1917 consensus_10235#1 TCTGTTTACGGCGCAAGGGCACCCATTCCTTTTCCTATGTGGATGGATGGACCCTTTGCC 596 ********************************* ********************* **** consensus_10235#0 ATTTCATACACAGGAGTGACAGGTTGTATAGTACATGAGAAATTCAGATGCCTCTTCCAT 1977 consensus_10235#1 ATTTCATACACAGGAGTGACAGGTTGTATAGTACATGAGAAATTCAGATGCCTCTTCCAT 656 ************************************************************ consensus_10235#0 GAGTATAATACAAGTTCTCAAATCTTTTTTGCCC 2011 consensus_10235#1 GAGTATAAAAAAAAAAAAAAAAAAAAAA------ 684 ******** * ** *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||