These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10239#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 717 fasta sequence [TCGTCCAGGTGGTCGGCTCGCCGCCTCCTCGCCCGCGCTCGCCGCGCCGCGTGTCGCGCCACCGCCTCCCTCTCTTCTCACCCCCCCCCCCCCCTCCTTCCTCTCTNTCCGCTGCCTACGATATAGGCATCGGCGAGGGCGACGAGGGGGATCGGAGGAGGAGGAGGCCCGATGGCGTTGGGGGCGGTGTTCCACGGCGCGCA-CTGA-TGCTGGATCTGGCGGTGGCCGGGCTGTCGCTGGTGGTCGCGCTCGGCCTCTTCGCCGTCGT-CACCGCCGTGCTCTGCTCCGCCGCCTTCCTCCACCACTCCAAGCCCGTCGCGTCCTAGCCACCCGCTGCTCATCACCGCCGCCACAACCCCCCTCGGAATGAGATTGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAGGCGCACCATTTG-ATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAATCACACGTATCAGGTGATAGTTCGATGCACTTGTAGTTGTATGAATGTTATGTTTACTTGTACTATTCTGCCGATATTAGCTGTTTGTATTGTAAATTTCCCATTTAGTCAACCTTGGCAACTTTTAGGGTTTTACATCTCATATACCTTATGTACATTGTTTTATTCTTATATGGAAGTATGGAAGGTTCAGCTCCTTGAGGCAATAGATTTCATCTAAAAAAAAAAAAAAAAAAAA] [+] EMBL OSR00171A [TCGTCCAGGTGGTCGGCTCGCCGCCTCCTCGCCCGCGCTCGCCGCGCCGCGNGTCGCGCCACCGNCTCCCTCTCTTCTCACCCCCCCCCCCCCCTCCTTCCTCTCTNTCCGCTGCCTACGATATAGGCATCGGCGAGGGCGACGAGGGGGATCGGAGGAGGAGGAGGCCCGATGGCGTTGGGGGCGGTGTTCCANGGCGCGCA NTGATTGCTGGATCTGGCGGTGGCCGGGCTGTCGCTGGTGGTCGCGCTCGGCCTCTTCGCCGTCGT NACCGCCGTGCTCTGNTCCGCCGACTTCCTCCACCACTTCAAGCCNGTNGCGTCCTAGCAAC ] [+] EMBL OSC9621 [ CGTCCAGGTGGTCGGCTCGCCGCCTCCTCGCCCGCGCTCGCCGCGCCGCGTGTCGCGCCACCGCCTCCCTCTCTTCTAACCCCCCCCCCCCCCTCCTTNTTCTCTNTCCGCTGCCTACGATATAGGCATCGGCGAGGGCGACGAGGGGGATCGGAGGAGGAGGAGGCCCGATGGCGTTGGGGGCGGTGTTCCACGGCGCGCANTTGA TGCTGGATCTNGCGGTGGCCGGGCTNTCGCTGGTGGTCGCGNTCGGCCTCTTNGCCGTCGTAAACCG ] [+] EMBL CB678409 [ GGTGGCCTGCTCGCCGCCTCCTCGCCCGCGCTCGCCGCGCCGCGTGTCGCGCCACCGCCTCCCTCTCTTCTCACCCCCCCCCCCCCCTCCTTCCTCTCTCTCCGCTGCCTACGATATAGGCATCGGCGAGGGCGACGAGGGGGATCGGAGGAGGAGGAGGCCCGATGGCGTTGGGGGCGGTGTTCCACGGCGCGCAGCTGA TGCTGGATCTGGCGGTGGCCGGGCTGTCGCTGGTGGTCGCGCTCGGCCTCTTCGCCGTCGT CACCGCCGTGCTCTGCTCCGCCGCCTTCCTCCACCACTCCAAGCCCGTCGCGTCCTAGCCACCCGCTGCTCATCACCGCCGCCACAACCCCCCTCGGAATGAGATTGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAGGCGCACCATTTG ATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAATCACACGTATCAGGTGATAGTTCGATGCACTTGTAGTTGTATGAATGTTATGTTTACTTGAACTATTCTGCCGATATTAGCTGTTTGTATTGTAAATTTCCCATTTAGTCAACCTTGGCAACTTTTAGGGTTTTACATCTCATATACCTTATGTACATTGTTTTATTCTTAT ] [+] EMBL C29000 [ GCCCGATGGCGTTGGGGGCGGTGTTCCACGGCGCGCA CTGA TNCTGGATCTNGCGGTNGCCGGGCTGTCGCTNGTGGTCGCGCTCGGCCTCTNCGCCGTCGT CACCGCCGTGCTCTGCTCCGCCGCCTTCCTCCACCACTCCAAGCCCGTCGCGTCCTAGCCACCCGCTGCTCATCACCNCCGCCACAACCCCCCTCGGAATGAGATTNTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAGGCGCACCATTTGNATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTNTAGTGAATCACACGTATCAGGTGATAGTTCGATGCACTTGTAGTTGTATGAATGTNATGTTTACTNGTACTATTCTGCCGATATTAGCTGTTTGTATTGTAAATATNCCATTTAG ] [+] EMBL AU101591 [ CTGGTGGTCGCGCTCGGCCTCTTCGCCGTCGT CACCGCCGTGCTCTGCTCCGCCGCCTTCCTCCACCACTCCAAGCCCGTCGCGTCCTAGCCACCCGCTGCTCATCACCGCCGCCACAACCCCCCTCGGAATGAGATTGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAGGCGCACCATTTG ATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAATCACACGTATCAGGTGATAGTTCGATGCACTTGTAGTTGTATGAATGTTATGTTTACTTGTACTATTCTGCCGATATTAGCTGTTTGTATTGTAAATTTCCCATTTAGTCAACCTTGGCAACTTTTAGGGTTTTACATCTCATATACCTTATGTACATTGTTTTATTCTTATATGGAAGTATGGAAGGTTCAGCTCCTTGAGGCAATAGATTTCATCTAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_10239#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence [CCCCCTCCTTCCTCTCTCTCCGCTGCCTACGATATAGGCATCGGAGAGGGCGACGAGGGGGATCGGAGGAGGAGGCCCGATGGCGTTGGGGGCGGTGTTCCACGGCGCGCAGCTGATGCTGGATCTGGCGGTGGCCGGGCTGTCGCTGGTGGTCGCGCTCGGCCTCTTCGCCGTCGTCACCGCCGTGCTCTGCTCCGCCGCCTTCCTCCACCACTCCAAGCCCGTCGCGTCCTAGCCACCCGCTGCTCATCACCGCCGCCACAACCCCCCTCGGAATGAGATTGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAGGCGCACCATTTGATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAATCACACGTATCAGGTGATAGTTCGATGCACTTGTAGTTGTATGAATGTTATGTTTACTTGTGCTATTCTGCCGATATTAGCTGTTTGTATTGTAAATTTCCCATTTAGTCAACCTTGGGCACTTTTAGGGTTTTACATCTCATATACCTTATGGACATTGTTTTATTCTTATATGGAAGTATGGAAGGTTCAGCTCCTTGAGGCCNNNAAANNNAANANCNNCACCCCTTGAAC] [+] EMBL CA756528 [CCCCCTCCTTCCTCTCTCTCCGCTGCCTACGATATAGGCATCGGAGAGGGCGACGAGGGGGATCGGAGGAGGAGGCCCGATGGCGTTGGGGGCGGTGTTCCACGGCGCGCAGCTGATGCTGGATCTGGCGGTGGCCGGGCTGTCGCTGGTGGTCGCGCTCGGCCTCTTCGCCGTCGTCACCGCCGTGCTCTGCTCCGCCGCCTTCCTCCACCACTCCAAGCCCGTCGCGTCCTAGCCACCCGCTGCTCATCACCGCCGCCACAACCCCCCTCGGAATGAGATTGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAGGCGCACCATTTGATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAATCACACGTATCAGGTGATAGTTCGATGCACTTGTAGTTGTATGAATGTTATGTTTACTTGTGCTATTCTGCCGATATTAGCTGTTTGTATTGTAAATTTCCCATTTAGTCAACCTTGGGCACTTTTAGGGTTTTACATCTCATATACCTTATGGACATTGTTTTATTCTTATATGGAAGTATGGAAGGTTCAGCTCCTTGAGGCCNNNAAANNNAANANCNNCACCCCTTGAAC] consensusID : consensus_10239#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence [TGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAGGCGCACCATTTGATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAATCACACGTATCAGGACCAGGAGAACATGTCTTTTGTTTGCTTTAGTACGTGTGTGCAGATGATGATCAACTAAACTCAACGCCGCTGGATTCCTATGCTGTATTTTTATTTCTCCCTGTGGTTCCAATACAATAATAACCCTGCAGTTCAAGCGACGATATTATATTTTGCTGCAGTTGCATTATAAAGGTGAGTCTCATTCCTGAGAAAAAAAAAAA] [+] EMBL AU101866 [TGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAGGCGCACCATTTGATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAATCACACGTATCAGGACCAGGAGAACATGTCTTTTGTTTGCTTTAGTACGTGTGTGCAGATGATGATCAACTAAACTCAACGCCGCTGGATTCCTATGCTGTATTTTTATTTCTCCCTGTGGTTCCAATACAATAATAACCCTGCAGTTCAAGCGACGATATTATATTTTGCTGCAGTTGCATTATAAAGGTGAGTCTCATTCCTGAGAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10239#0 TCGTCCAGGTGGTCGGCTCGCCGCCTCCTCGCCCGCGCTCGCCGCGCCGCGTGTCGCGCC 60 consensus_10239#1 ------------------------------------------------------------ consensus_10239#2 ------------------------------------------------------------ consensus_10239#0 ACCGCCTCCCTCTCTTCTCACCCCCCCCCCCCCCTCCTTCCTCTCTNTCCGCTGCCTACG 120 consensus_10239#1 -----------------------------CCCCCTCCTTCCTCTCTCTCCGCTGCCTACG 31 consensus_10239#2 ------------------------------------------------------------ consensus_10239#0 ATATAGGCATCGGCGAGGGCGACGAGGGGGATCGGAGGAGGAGGAGGCCCGATGGCGTTG 180 consensus_10239#1 ATATAGGCATCGGAGAGGGCGACGAGGGGGATCGGAGGAGGAGG---CCCGATGGCGTTG 88 consensus_10239#2 ------------------------------------------------------------ consensus_10239#0 GGGGCGGTGTTCCACGGCGCGCA-CTGATGCTGGATCTGGCGGTGGCCGGGCTGTCGCTG 239 consensus_10239#1 GGGGCGGTGTTCCACGGCGCGCAGCTGATGCTGGATCTGGCGGTGGCCGGGCTGTCGCTG 148 consensus_10239#2 ------------------------------------------------------------ consensus_10239#0 GTGGTCGCGCTCGGCCTCTTCGCCGTCGTCACCGCCGTGCTCTGCTCCGCCGCCTTCCTC 299 consensus_10239#1 GTGGTCGCGCTCGGCCTCTTCGCCGTCGTCACCGCCGTGCTCTGCTCCGCCGCCTTCCTC 208 consensus_10239#2 ------------------------------------------------------------ consensus_10239#0 CACCACTCCAAGCCCGTCGCGTCCTAGCCACCCGCTGCTCATCACCGCCGCCACAACCCC 359 consensus_10239#1 CACCACTCCAAGCCCGTCGCGTCCTAGCCACCCGCTGCTCATCACCGCCGCCACAACCCC 268 consensus_10239#2 ------------------------------------------------------------ consensus_10239#0 CCTCGGAATGAGATTGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAG 419 consensus_10239#1 CCTCGGAATGAGATTGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAG 328 consensus_10239#2 --------------TGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAG 46 ********************************************** consensus_10239#0 GCGCACCATTTGATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAA 479 consensus_10239#1 GCGCACCATTTGATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAA 388 consensus_10239#2 GCGCACCATTTGATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAA 106 ************************************************************ consensus_10239#0 TCACACGTATCAGGTGATAGTTCGATGCA-CTTGTAGTTGTATGAATGTTATGTTTACTT 538 consensus_10239#1 TCACACGTATCAGGTGATAGTTCGATGCA-CTTGTAGTTGTATGAATGTTATGTTTACTT 447 consensus_10239#2 TCACACGTATCAGG-ACCAGGAGAACATGTCTTTTGTTTGCTTTAGTAC-GTGTGTGCAG 164 ************** ** * *** * *** * * * *** * * consensus_10239#0 GTACTATTCTGCCGATATTA--GCTGTTTGTATTGTAAATTTCCCATTTAGTCAACCTTG 596 consensus_10239#1 GTGCTATTCTGCCGATATTA--GCTGTTTGTATTGTAAATTTCCCATTTAGTCAACCTTG 505 consensus_10239#2 ATGATGATCAACTAAACTCAACGCCGCTGGATTCCTATGCTGTATTTTTATTTCTCCCTG 224 * * ** * * * * ** * * * * ** * **** * ** ** consensus_10239#0 GCAACTTTTAGGGTTTTACATCTCATATACCTTATG-TACATTGTTTTATTCTTATATGG 655 consensus_10239#1 GGCACTTTTAGGGTTTTACATCTCATATACCTTATG-GACATTGTTTTATTCTTATATGG 564 consensus_10239#2 --TGGTTCCAATACAATAATAACCCTGCAGTTCAAGCGACGATATTATATTTTGCTGCAG 282 ** * ** * * * * * * ** * ** **** * * * consensus_10239#0 AAGTATGG-AAGGTTCAGCTCCTTGAGGCAATAGATTTCATCTAAAAAAAAAAAAAAAAA 714 consensus_10239#1 AAGTATGG-AAGGTTCAGCTCCTTGAGGCCNNNAA----ANNNAANANCNNCACCCCTTG 619 consensus_10239#2 TTGCATTATAAAGGTGAGTCTCATT---CCTGAGA----AAAAAAAAAA----------- 324 * ** ** * * ** * * * * * ** * consensus_10239#0 AAA 717 consensus_10239#1 AAC 622 consensus_10239#2 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||