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Oryza sativa
cluster # 10239 cluster # 10239       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10239#0 length = 717 sequences # 5  
consensus_10239#1 length = 622 sequences # 1  
consensus_10239#2 length = 324 sequences # 1  

consensusID : consensus_10239#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 717
fasta sequence
                              [TCGTCCAGGTGGTCGGCTCGCCGCCTCCTCGCCCGCGCTCGCCGCGCCGCGTGTCGCGCCACCGCCTCCCTCTCTTCTCACCCCCCCCCCCCCCTCCTTCCTCTCTNTCCGCTGCCTACGATATAGGCATCGGCGAGGGCGACGAGGGGGATCGGAGGAGGAGGAGGCCCGATGGCGTTGGGGGCGGTGTTCCACGGCGCGCA-CTGA-TGCTGGATCTGGCGGTGGCCGGGCTGTCGCTGGTGGTCGCGCTCGGCCTCTTCGCCGTCGT-CACCGCCGTGCTCTGCTCCGCCGCCTTCCTCCACCACTCCAAGCCCGTCGCGTCCTAGCCACCCGCTGCTCATCACCGCCGCCACAACCCCCCTCGGAATGAGATTGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAGGCGCACCATTTG-ATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAATCACACGTATCAGGTGATAGTTCGATGCACTTGTAGTTGTATGAATGTTATGTTTACTTGTACTATTCTGCCGATATTAGCTGTTTGTATTGTAAATTTCCCATTTAGTCAACCTTGGCAACTTTTAGGGTTTTACATCTCATATACCTTATGTACATTGTTTTATTCTTATATGGAAGTATGGAAGGTTCAGCTCCTTGAGGCAATAGATTTCATCTAAAAAAAAAAAAAAAAAAAA]

[+] EMBL OSR00171A            [TCGTCCAGGTGGTCGGCTCGCCGCCTCCTCGCCCGCGCTCGCCGCGCCGCGNGTCGCGCCACCGNCTCCCTCTCTTCTCACCCCCCCCCCCCCCTCCTTCCTCTCTNTCCGCTGCCTACGATATAGGCATCGGCGAGGGCGACGAGGGGGATCGGAGGAGGAGGAGGCCCGATGGCGTTGGGGGCGGTGTTCCANGGCGCGCA NTGATTGCTGGATCTGGCGGTGGCCGGGCTGTCGCTGGTGGTCGCGCTCGGCCTCTTCGCCGTCGT NACCGCCGTGCTCTGNTCCGCCGACTTCCTCCACCACTTCAAGCCNGTNGCGTCCTAGCAAC                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL OSC9621              [ CGTCCAGGTGGTCGGCTCGCCGCCTCCTCGCCCGCGCTCGCCGCGCCGCGTGTCGCGCCACCGCCTCCCTCTCTTCTAACCCCCCCCCCCCCCTCCTTNTTCTCTNTCCGCTGCCTACGATATAGGCATCGGCGAGGGCGACGAGGGGGATCGGAGGAGGAGGAGGCCCGATGGCGTTGGGGGCGGTGTTCCACGGCGCGCANTTGA TGCTGGATCTNGCGGTGGCCGGGCTNTCGCTGGTGGTCGCGNTCGGCCTCTTNGCCGTCGTAAACCG                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB678409             [       GGTGGCCTGCTCGCCGCCTCCTCGCCCGCGCTCGCCGCGCCGCGTGTCGCGCCACCGCCTCCCTCTCTTCTCACCCCCCCCCCCCCCTCCTTCCTCTCTCTCCGCTGCCTACGATATAGGCATCGGCGAGGGCGACGAGGGGGATCGGAGGAGGAGGAGGCCCGATGGCGTTGGGGGCGGTGTTCCACGGCGCGCAGCTGA TGCTGGATCTGGCGGTGGCCGGGCTGTCGCTGGTGGTCGCGCTCGGCCTCTTCGCCGTCGT CACCGCCGTGCTCTGCTCCGCCGCCTTCCTCCACCACTCCAAGCCCGTCGCGTCCTAGCCACCCGCTGCTCATCACCGCCGCCACAACCCCCCTCGGAATGAGATTGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAGGCGCACCATTTG ATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAATCACACGTATCAGGTGATAGTTCGATGCACTTGTAGTTGTATGAATGTTATGTTTACTTGAACTATTCTGCCGATATTAGCTGTTTGTATTGTAAATTTCCCATTTAGTCAACCTTGGCAACTTTTAGGGTTTTACATCTCATATACCTTATGTACATTGTTTTATTCTTAT                                                                  ]
[+] EMBL C29000               [                                                                                                                                                                      GCCCGATGGCGTTGGGGGCGGTGTTCCACGGCGCGCA CTGA TNCTGGATCTNGCGGTNGCCGGGCTGTCGCTNGTGGTCGCGCTCGGCCTCTNCGCCGTCGT CACCGCCGTGCTCTGCTCCGCCGCCTTCCTCCACCACTCCAAGCCCGTCGCGTCCTAGCCACCCGCTGCTCATCACCNCCGCCACAACCCCCCTCGGAATGAGATTNTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAGGCGCACCATTTGNATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTNTAGTGAATCACACGTATCAGGTGATAGTTCGATGCACTTGTAGTTGTATGAATGTNATGTTTACTNGTACTATTCTGCCGATATTAGCTGTTTGTATTGTAAATATNCCATTTAG                                                                                                                                  ]
[+] EMBL AU101591             [                                                                                                                                                                                                                                              CTGGTGGTCGCGCTCGGCCTCTTCGCCGTCGT CACCGCCGTGCTCTGCTCCGCCGCCTTCCTCCACCACTCCAAGCCCGTCGCGTCCTAGCCACCCGCTGCTCATCACCGCCGCCACAACCCCCCTCGGAATGAGATTGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAGGCGCACCATTTG ATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAATCACACGTATCAGGTGATAGTTCGATGCACTTGTAGTTGTATGAATGTTATGTTTACTTGTACTATTCTGCCGATATTAGCTGTTTGTATTGTAAATTTCCCATTTAGTCAACCTTGGCAACTTTTAGGGTTTTACATCTCATATACCTTATGTACATTGTTTTATTCTTATATGGAAGTATGGAAGGTTCAGCTCCTTGAGGCAATAGATTTCATCTAAAAAAAAAAAAAAAAAAAA]


>consensus_10239#0 TCGTCCAGGTGGTCGGCTCGCCGCCTCCTCGCCCGCGCTCGCCGCGCCGCGTGTCGCGCC ACCGCCTCCCTCTCTTCTCACCCCCCCCCCCCCCTCCTTCCTCTCTNTCCGCTGCCTACG ATATAGGCATCGGCGAGGGCGACGAGGGGGATCGGAGGAGGAGGAGGCCCGATGGCGTTG GGGGCGGTGTTCCACGGCGCGCACTGATGCTGGATCTGGCGGTGGCCGGGCTGTCGCTGG TGGTCGCGCTCGGCCTCTTCGCCGTCGTCACCGCCGTGCTCTGCTCCGCCGCCTTCCTCC ACCACTCCAAGCCCGTCGCGTCCTAGCCACCCGCTGCTCATCACCGCCGCCACAACCCCC CTCGGAATGAGATTGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAGG CGCACCATTTGATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAAT CACACGTATCAGGTGATAGTTCGATGCACTTGTAGTTGTATGAATGTTATGTTTACTTGT ACTATTCTGCCGATATTAGCTGTTTGTATTGTAAATTTCCCATTTAGTCAACCTTGGCAA CTTTTAGGGTTTTACATCTCATATACCTTATGTACATTGTTTTATTCTTATATGGAAGTA TGGAAGGTTCAGCTCCTTGAGGCAATAGATTTCATCTAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_10239#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 622
fasta sequence
                              [CCCCCTCCTTCCTCTCTCTCCGCTGCCTACGATATAGGCATCGGAGAGGGCGACGAGGGGGATCGGAGGAGGAGGCCCGATGGCGTTGGGGGCGGTGTTCCACGGCGCGCAGCTGATGCTGGATCTGGCGGTGGCCGGGCTGTCGCTGGTGGTCGCGCTCGGCCTCTTCGCCGTCGTCACCGCCGTGCTCTGCTCCGCCGCCTTCCTCCACCACTCCAAGCCCGTCGCGTCCTAGCCACCCGCTGCTCATCACCGCCGCCACAACCCCCCTCGGAATGAGATTGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAGGCGCACCATTTGATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAATCACACGTATCAGGTGATAGTTCGATGCACTTGTAGTTGTATGAATGTTATGTTTACTTGTGCTATTCTGCCGATATTAGCTGTTTGTATTGTAAATTTCCCATTTAGTCAACCTTGGGCACTTTTAGGGTTTTACATCTCATATACCTTATGGACATTGTTTTATTCTTATATGGAAGTATGGAAGGTTCAGCTCCTTGAGGCCNNNAAANNNAANANCNNCACCCCTTGAAC]

[+] EMBL CA756528             [CCCCCTCCTTCCTCTCTCTCCGCTGCCTACGATATAGGCATCGGAGAGGGCGACGAGGGGGATCGGAGGAGGAGGCCCGATGGCGTTGGGGGCGGTGTTCCACGGCGCGCAGCTGATGCTGGATCTGGCGGTGGCCGGGCTGTCGCTGGTGGTCGCGCTCGGCCTCTTCGCCGTCGTCACCGCCGTGCTCTGCTCCGCCGCCTTCCTCCACCACTCCAAGCCCGTCGCGTCCTAGCCACCCGCTGCTCATCACCGCCGCCACAACCCCCCTCGGAATGAGATTGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAGGCGCACCATTTGATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAATCACACGTATCAGGTGATAGTTCGATGCACTTGTAGTTGTATGAATGTTATGTTTACTTGTGCTATTCTGCCGATATTAGCTGTTTGTATTGTAAATTTCCCATTTAGTCAACCTTGGGCACTTTTAGGGTTTTACATCTCATATACCTTATGGACATTGTTTTATTCTTATATGGAAGTATGGAAGGTTCAGCTCCTTGAGGCCNNNAAANNNAANANCNNCACCCCTTGAAC]


>consensus_10239#1 CCCCCTCCTTCCTCTCTCTCCGCTGCCTACGATATAGGCATCGGAGAGGGCGACGAGGGG GATCGGAGGAGGAGGCCCGATGGCGTTGGGGGCGGTGTTCCACGGCGCGCAGCTGATGCT GGATCTGGCGGTGGCCGGGCTGTCGCTGGTGGTCGCGCTCGGCCTCTTCGCCGTCGTCAC CGCCGTGCTCTGCTCCGCCGCCTTCCTCCACCACTCCAAGCCCGTCGCGTCCTAGCCACC CGCTGCTCATCACCGCCGCCACAACCCCCCTCGGAATGAGATTGTTGTTGGAGGCATGCC TTCTCATGCACCATATGCATAGCAGAAGGCGCACCATTTGATGCCAGAGCTTCCTTCAGA CACTTAATGTAGATGCAAGTGTAGTGAATCACACGTATCAGGTGATAGTTCGATGCACTT GTAGTTGTATGAATGTTATGTTTACTTGTGCTATTCTGCCGATATTAGCTGTTTGTATTG TAAATTTCCCATTTAGTCAACCTTGGGCACTTTTAGGGTTTTACATCTCATATACCTTAT GGACATTGTTTTATTCTTATATGGAAGTATGGAAGGTTCAGCTCCTTGAGGCCNNNAAAN NNAANANCNNCACCCCTTGAAC



consensusID : consensus_10239#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 324
fasta sequence
                              [TGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAGGCGCACCATTTGATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAATCACACGTATCAGGACCAGGAGAACATGTCTTTTGTTTGCTTTAGTACGTGTGTGCAGATGATGATCAACTAAACTCAACGCCGCTGGATTCCTATGCTGTATTTTTATTTCTCCCTGTGGTTCCAATACAATAATAACCCTGCAGTTCAAGCGACGATATTATATTTTGCTGCAGTTGCATTATAAAGGTGAGTCTCATTCCTGAGAAAAAAAAAAA]

[+] EMBL AU101866             [TGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAGGCGCACCATTTGATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAATCACACGTATCAGGACCAGGAGAACATGTCTTTTGTTTGCTTTAGTACGTGTGTGCAGATGATGATCAACTAAACTCAACGCCGCTGGATTCCTATGCTGTATTTTTATTTCTCCCTGTGGTTCCAATACAATAATAACCCTGCAGTTCAAGCGACGATATTATATTTTGCTGCAGTTGCATTATAAAGGTGAGTCTCATTCCTGAGAAAAAAAAAAA]


>consensus_10239#2 TGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAGGCGCACCATTTGAT GCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAATCACACGTATCAGG ACCAGGAGAACATGTCTTTTGTTTGCTTTAGTACGTGTGTGCAGATGATGATCAACTAAA CTCAACGCCGCTGGATTCCTATGCTGTATTTTTATTTCTCCCTGTGGTTCCAATACAATA ATAACCCTGCAGTTCAAGCGACGATATTATATTTTGCTGCAGTTGCATTATAAAGGTGAG TCTCATTCCTGAGAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10239#0      TCGTCCAGGTGGTCGGCTCGCCGCCTCCTCGCCCGCGCTCGCCGCGCCGCGTGTCGCGCC 60
consensus_10239#1      ------------------------------------------------------------
consensus_10239#2      ------------------------------------------------------------
                                                                                   

consensus_10239#0      ACCGCCTCCCTCTCTTCTCACCCCCCCCCCCCCCTCCTTCCTCTCTNTCCGCTGCCTACG 120
consensus_10239#1      -----------------------------CCCCCTCCTTCCTCTCTCTCCGCTGCCTACG 31
consensus_10239#2      ------------------------------------------------------------
                                                                                   

consensus_10239#0      ATATAGGCATCGGCGAGGGCGACGAGGGGGATCGGAGGAGGAGGAGGCCCGATGGCGTTG 180
consensus_10239#1      ATATAGGCATCGGAGAGGGCGACGAGGGGGATCGGAGGAGGAGG---CCCGATGGCGTTG 88
consensus_10239#2      ------------------------------------------------------------
                                                                                   

consensus_10239#0      GGGGCGGTGTTCCACGGCGCGCA-CTGATGCTGGATCTGGCGGTGGCCGGGCTGTCGCTG 239
consensus_10239#1      GGGGCGGTGTTCCACGGCGCGCAGCTGATGCTGGATCTGGCGGTGGCCGGGCTGTCGCTG 148
consensus_10239#2      ------------------------------------------------------------
                                                                                   

consensus_10239#0      GTGGTCGCGCTCGGCCTCTTCGCCGTCGTCACCGCCGTGCTCTGCTCCGCCGCCTTCCTC 299
consensus_10239#1      GTGGTCGCGCTCGGCCTCTTCGCCGTCGTCACCGCCGTGCTCTGCTCCGCCGCCTTCCTC 208
consensus_10239#2      ------------------------------------------------------------
                                                                                   

consensus_10239#0      CACCACTCCAAGCCCGTCGCGTCCTAGCCACCCGCTGCTCATCACCGCCGCCACAACCCC 359
consensus_10239#1      CACCACTCCAAGCCCGTCGCGTCCTAGCCACCCGCTGCTCATCACCGCCGCCACAACCCC 268
consensus_10239#2      ------------------------------------------------------------
                                                                                   

consensus_10239#0      CCTCGGAATGAGATTGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAG 419
consensus_10239#1      CCTCGGAATGAGATTGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAG 328
consensus_10239#2      --------------TGTTGTTGGAGGCATGCCTTCTCATGCACCATATGCATAGCAGAAG 46
                                     **********************************************

consensus_10239#0      GCGCACCATTTGATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAA 479
consensus_10239#1      GCGCACCATTTGATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAA 388
consensus_10239#2      GCGCACCATTTGATGCCAGAGCTTCCTTCAGACACTTAATGTAGATGCAAGTGTAGTGAA 106
                       ************************************************************

consensus_10239#0      TCACACGTATCAGGTGATAGTTCGATGCA-CTTGTAGTTGTATGAATGTTATGTTTACTT 538
consensus_10239#1      TCACACGTATCAGGTGATAGTTCGATGCA-CTTGTAGTTGTATGAATGTTATGTTTACTT 447
consensus_10239#2      TCACACGTATCAGG-ACCAGGAGAACATGTCTTTTGTTTGCTTTAGTAC-GTGTGTGCAG 164
                       **************    **    *     *** *  ***  * * *    *** * *  

consensus_10239#0      GTACTATTCTGCCGATATTA--GCTGTTTGTATTGTAAATTTCCCATTTAGTCAACCTTG 596
consensus_10239#1      GTGCTATTCTGCCGATATTA--GCTGTTTGTATTGTAAATTTCCCATTTAGTCAACCTTG 505
consensus_10239#2      ATGATGATCAACTAAACTCAACGCCGCTGGATTCCTATGCTGTATTTTTATTTCTCCCTG 224
                        *  *  **  *  *  * *  ** * * *  *  **   *     **** *   ** **

consensus_10239#0      GCAACTTTTAGGGTTTTACATCTCATATACCTTATG-TACATTGTTTTATTCTTATATGG 655
consensus_10239#1      GGCACTTTTAGGGTTTTACATCTCATATACCTTATG-GACATTGTTTTATTCTTATATGG 564
consensus_10239#2      --TGGTTCCAATACAATAATAACCCTGCAGTTCAAGCGACGATATTATATTTTGCTGCAG 282
                            **  *      **     * *  *  * * *  **  * ** **** *  *   *

consensus_10239#0      AAGTATGG-AAGGTTCAGCTCCTTGAGGCAATAGATTTCATCTAAAAAAAAAAAAAAAAA 714
consensus_10239#1      AAGTATGG-AAGGTTCAGCTCCTTGAGGCCNNNAA----ANNNAANANCNNCACCCCTTG 619
consensus_10239#2      TTGCATTATAAAGGTGAGTCTCATT---CCTGAGA----AAAAAAAAAA----------- 324
                         * **   ** * * **   * *    *     *    *   ** *             

consensus_10239#0      AAA 717
consensus_10239#1      AAC 622
consensus_10239#2      ---
                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)