These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1024#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1951 fasta sequence [CGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCATCCGGCCGAGGGCACGCCTGCCTGGGCGTCACGCCATGGAAGGACACCGGATATATTGTTTCGACGTGCGATGAATGCTTGCAGCGTGCTTGATAGATTGCCCACATAGTCTGGGAGGTTTCCGGTGAAATAATTTGAGTCGATTTCAAGGACAGAAAGCTTCCTACAGTTAGAAAGAGCAGACAAGAATTTAAGATCCCCCTGTAAGCTATTTTCGAAAATAACAAAGTATGTCAAAGAGTTCATGCTGCCAACTGTTGATGGGACAGATCCATCCAACAGGTTTGTGCTCAAATCCAGGCGTGATAATGCAGATAAGTTGCCGAGAGAAGCAGGGATGGGTCCCCTTAGTTGATTCCTTGCAATAAGCAAATCTGAAAGTTTTCCAAGCTTTCCAATATCTGCTGGAATGGTTCCTGTTAGGTTGCACGTGCTGAGCTCTAGGGAAGCCAGCATGGTAATGTTGCTTAACGCATCAGGGATTGAACCACCATCGAAGTGATTCTCACCCAAGTTGAGCTTGACGAGATTCGTCAACTTGCCCAGCCATGATGGCAAAGCACCCTCGAATAAGTTCTGAATGAGGGAAAAAACTTGGAGTTGCTGGCACGCCGCAAACCCCTGTGGAATTGGACCGGTGAAATTGTTGGCATCAATGGAGAAAAACCAGAGACTCGGGAGTCTGAAGCTTTCGTTGCCTGGGATAGGGCCAGTTAAGCCGTTCAAGGCAAGAGCAATAACTCCTAGCATAGACATGTTGAAGACGCCTGGTGGTACTGGTCCGGCAAGTTGATTAACCTGCAAGTCAAGGAATTGAAGCATGGGCAATGAGCCGATGCAGGCTGGTATTGATCCAGAAAGGCTGTTGTTGGCAATGTTGAGGTAAGATAACAAAGGTGTGTTGTTGAACAGACTGTTTGGGATCGACCCAGTGAGGCCATTGTTCTGAATGTTGATGCTGCGAAGGCTGTGCAGGCCCTGCAGATCGGCTGGGATTTGTCCAGAGAGCTGGTTAACCGCGAGACGAAGAACGCCAAGCCTCGTGAGGTTCCCTATGGAGGCTGGGATGACCCCTGAGAGGGCATTATTGCCAAGATCAAGGAGCTCGAGGCGATGCAGCCTTCCGATATCGTCTGGGATTGAACCCGTGAGGTTTGTGATGGTGAGGTCAAGGACGGAGAGGAAAGATAGGTTACCGATGTGAGGGCTCAGCTTTCCTTGGAGGGGAACTCCGGGCAGCTCCACTCCGGTGACACGCTGCCACTGCCGCCGGCTGCAAGTGATCCCCATCCACCGGCAGAACGGCGTGCCGGCAGTCCAGTTGGTGGCAAGAATGTTGTAGGGATCGGAGAGCTCACCTTTGAAAGCCAGCAGCGCAGCGAGATCGCTGTCGCTGCCATTGCTCTTGCTCGTCCCTGGAGGAGAAGCAGCAGCAGCAGCAACCACAGGGGACAAAGTGATCAACAGCAGAGCGGACATGATGATGCATACTGGAGATCCGAGCGCCATGACGACGCTGAAGTGATGCTTTTGTGGCAATTAACTTTGCAACAAGCTAAGAACTAACAAAGCATTATATGTATTTCCCTCCTCCTGATTGGCTGACTGACGGTAATCAATGAGCCCTTGGATGTTGTTTTCTCTCCACATGTGGGATTGTGGGGCATGAAACTTGTTTCTTTCACACTATTGACGAATCAAGACCTTGACAGATACAAGGTACATATAGCTATCTTTGCCGAATGAGTCGAATATATTGACTGTTGACCAATCATGCACGCACCGGTTTTGATTGGAACCTTGTTTGAGCTTTCTTTTTTAAAGCTGGATCA] [+] EMBL AK059600 [CGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCATCCGGCCGAGGGCACGCCTGCCTGGGCGTCACGCCATGGAAGGACACCGGATATATTGTTTCGACGTGCGATGAATGCTTGCAGCGTGCTTGATAGATTGCCCACATAGTCTGGGAGGTTTCCGGTGAAATAATTTGAGTCGATTTCAAGGACAGAAAGCTTCCTACAGTTAGAAAGAGCAGACAAGAATTTAAGATCCCCCTGTAAGCTATTTTCGAAAATAACAAAGTATGTCAAAGAGTTCATGCTGCCAACTGTTGATGGGACAGATCCATCCAACAGGTTTGTGCTCAAATCCAGGCGTGATAATGCAGATAAGTTGCCGAGAGAAGCAGGGATGGGTCCCCTTAGTTGATTCCTTGCAATAAGCAAATCTGAAAGTTTTCCAAGCTTTCCAATATCTGCTGGAATGGTTCCTGTTAGGTTGCACGTGCTGAGCTCTAGGGAAGCCAGCATGGTAATGTTGCTTAACGCATCAGGGATTGAACCACCATCGAAGTGATTCTCACCCAAGTTGAGCTTGACGAGATTCGTCAACTTGCCCAGCCATGATGGCAAAGCACCCTCGAATAAGTTCTGAATGAGGGAAAAAACTTGGAGTTGCTGGCACGCCGCAAACCCCTGTGGAATTGGACCGGTGAAATTGTTGGCATCAATGGAGAAAAACCAGAGACTCGGGAGTCTGAAGCTTTCGTTGCCTGGGATAGGGCCAGTTAAGCCGTTCAAGGCAAGAGCAATAACTCCTAGCATAGACATGTTGAAGACGCCTGGTGGTACTGGTCCGGCAAGTTGATTAACCTGCAAGTCAAGGAATTGAAGCATGGGCAATGAGCCGATGCAGGCTGGTATTGATCCAGAAAGGCTGTTGTTGGCAATGTTGAGGTAAGATAACAAAGGTGTGTTGTTGAACAGACTGTTTGGGATCGACCCAGTGAGGCCATTGTTCTGAATGTTGATGCTGCGAAGGCTGTGCAGGCCCTGCAGATCGGCTGGGATTTGTCCAGAGAGCTGGTTAACCGCGAGACGAAGAACGCCAAGCCTCGTGAGGTTCCCTATGGAGGCTGGGATGACCCCTGAGAGGGCATTATTGCCAAGATCAAGGAGCTCGAGGCGATGCAGCCTTCCGATATCGTCTGGGATTGAACCCGTGAGGTTTGTGATGGTGAGGTCAAGGACGGAGAGGAAAGATAGGTTACCGATGTGAGGGCTCAGCTTTCCTTGGAGGGGAACTCCGGGCAGCTCCACTCCGGTGACACGCTGCCACTGCCGCCGGCTGCAAGTGATCCCCATCCACCGGCAGAACGGCGTGCCGGCAGTCCAGTTGGTGGCAAGAATGTTGTAGGGATCGGAGAGCTCACCTTTGAAAGCCAGCAGCGCAGCGAGATCGCTGTCGCTGCCATTGCTCTTGCTCGTCCCTGGAGGAGAAGCAGCAGCAGCAGCAACCACAGGGGACAAAGTGATCAACAGCAGAGCGGACATGATGATGCATACTGGAGATCCGAGCGCCATGACGACGCTGAAGTGATGCTTTTGTGGCAATTAACTTTGCAACAAGCTAAGAACTAACAAAGCATTATATGTATTTCCCTCCTCCTGATTGGCTGACTGACGGTAATCAATGAGCCCTTGGATGTTGTTTTCTCTCCACATGTGGGATTGTGGGGCATGAAACTTGTTTCTTTCACACTATTGACGAATCAAGACCTTGACAGATACAAGGTACATATAGCTATCTTTGCCGAATGAGTCGAATATATTGACTGTTGACCAATCATGCACGCACCGGTTTTGATTGGAACCTTGTTTGAGCTTTCTTTTTTAAAGCTGGATCA] consensusID : consensus_1024#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 849 fasta sequence [GTGCAGGCCCTGCAGATCGGCTGGGATTTGTCCAGAGAGCTGGTTAACCGCGAGACGAAGAACGCCAAGCCTCGTGAGGTTCCCTATGGAGGCTGGGATGACCCCTGAGAGGGCATTATTGCCAAGATCAAGGAGCTCGAGGCGATGCAGCCTTCCGATATCGTCTGGGATTGAACCCGTGAGGTTTGTGATGGTGAGGTTAAGGACGGAGAGGAAAGATAGGTTACCGATGTGAGGGCTCAGCTTTCCTTGGAGGGGAACTCCGGGCAGCTCCACTCCGGTGACACGCTGCCACTGCCGCCGGCTGCAAGTGATCCCCATCCACCGGCAGAACGGCGTGCCGGCAGTCCAGTTGGTGGCAAGAATGTTGTAGGGATCGGAGAGCTCACCTTTGAAAGCCAGCAGCGCAGCGAGATCGCTGTCGCTGCCATTGCTCTTGCTCGTCCCTGGAGGAGAAGCAGCAGCAGCAGCAACCAGGGGACAAAGTGATCAACAGCAGAGCGGACATGATGATGCATACTGGAGATCCGAGCGCCATGACGACGCTGAAGTGATGCTTTTGTGGCAATTAACTTTGCAACAAGCTAAGAACTAACAAAGCATTATATGTATTTCCCTCCTCCTGATTGGCTGACTGACGGTAATCAATGAGCCCTTGGATGTTNGTTTCTCTCCACATGTGGGATTTGTGGGGCATGAAACTTGTTTCTTTCACACTATTGACGAATCAAGACCTTGACAGATACAAGGTACATATAGCTATNCTTGCCGAATGAGTCGATATATTGACTGTTGACCAATCNNAAANAAAAAANAAATNAANTANTTTTTTAAAAAAAAATNATAAAA] [+] EMBL CA757031 [GTGCAGGCCCTGCAGATCGGCTGGGATTTGTCCAGAGAGCTGGTTAACCGCGAGACGAAGAACGCCAAGCCTCGTGAGGTTCCCTATGGAGGCTGGGATGACCCCTGAGAGGGCATTATTGCCAAGATCAAGGAGCTCGAGGCGATGCAGCCTTCCGATATCGTCTGGGATTGAACCCGTGAGGTTTGTGATGGTGAGGTTAAGGACGGAGAGGAAAGATAGGTTACCGATGTGAGGGCTCAGCTTTCCTTGGAGGGGAACTCCGGGCAGCTCCACTCCGGTGACACGCTGCCACTGCCGCCGGCTGCAAGTGATCCCCATCCACCGGCAGAACGGCGTGCCGGCAGTCCAGTTGGTGGCAAGAATGTTGTAGGGATCGGAGAGCTCACCTTTGAAAGCCAGCAGCGCAGCGAGATCGCTGTCGCTGCCATTGCTCTTGCTCGTCCCTGGAGGAGAAGCAGCAGCAGCAGCAACCAGGGGACAAAGTGATCAACAGCAGAGCGGACATGATGATGCATACTGGAGATCCGAGCGCCATGACGACGCTGAAGTGATGCTTTTGTGGCAATTAACTTTGCAACAAGCTAAGAACTAACAAAGCATTATATGTATTTCCCTCCTCCTGATTGGCTGACTGACGGTAATCAATGAGCCCTTGGATGTTNGTTTCTCTCCACATGTGGGATTTGTGGGGCATGAAACTTGTTTCTTTCACACTATTGACGAATCAAGACCTTGACAGATACAAGGTACATATAGCTATNCTTGCCGAATGAGTCGATATATTGACTGTTGACCAATCNNAAANAAAAAANAAATNAANTANTTTTTTAAAAAAAAATNATAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1024#0 CGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGT 60 consensus_1024#1 ------------------------------------------------------------ consensus_1024#0 GTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCAT 120 consensus_1024#1 ------------------------------------------------------------ consensus_1024#0 CCGGCCGAGGGCACGCCTGCCTGGGCGTCACGCCATGGAAGGACACCGGATATATTGTTT 180 consensus_1024#1 ------------------------------------------------------------ consensus_1024#0 CGACGTGCGATGAATGCTTGCAGCGTGCTTGATAGATTGCCCACATAGTCTGGGAGGTTT 240 consensus_1024#1 ------------------------------------------------------------ consensus_1024#0 CCGGTGAAATAATTTGAGTCGATTTCAAGGACAGAAAGCTTCCTACAGTTAGAAAGAGCA 300 consensus_1024#1 ------------------------------------------------------------ consensus_1024#0 GACAAGAATTTAAGATCCCCCTGTAAGCTATTTTCGAAAATAACAAAGTATGTCAAAGAG 360 consensus_1024#1 ------------------------------------------------------------ consensus_1024#0 TTCATGCTGCCAACTGTTGATGGGACAGATCCATCCAACAGGTTTGTGCTCAAATCCAGG 420 consensus_1024#1 ------------------------------------------------------------ consensus_1024#0 CGTGATAATGCAGATAAGTTGCCGAGAGAAGCAGGGATGGGTCCCCTTAGTTGATTCCTT 480 consensus_1024#1 ------------------------------------------------------------ consensus_1024#0 GCAATAAGCAAATCTGAAAGTTTTCCAAGCTTTCCAATATCTGCTGGAATGGTTCCTGTT 540 consensus_1024#1 ------------------------------------------------------------ consensus_1024#0 AGGTTGCACGTGCTGAGCTCTAGGGAAGCCAGCATGGTAATGTTGCTTAACGCATCAGGG 600 consensus_1024#1 ------------------------------------------------------------ consensus_1024#0 ATTGAACCACCATCGAAGTGATTCTCACCCAAGTTGAGCTTGACGAGATTCGTCAACTTG 660 consensus_1024#1 ------------------------------------------------------------ consensus_1024#0 CCCAGCCATGATGGCAAAGCACCCTCGAATAAGTTCTGAATGAGGGAAAAAACTTGGAGT 720 consensus_1024#1 ------------------------------------------------------------ consensus_1024#0 TGCTGGCACGCCGCAAACCCCTGTGGAATTGGACCGGTGAAATTGTTGGCATCAATGGAG 780 consensus_1024#1 ------------------------------------------------------------ consensus_1024#0 AAAAACCAGAGACTCGGGAGTCTGAAGCTTTCGTTGCCTGGGATAGGGCCAGTTAAGCCG 840 consensus_1024#1 ------------------------------------------------------------ consensus_1024#0 TTCAAGGCAAGAGCAATAACTCCTAGCATAGACATGTTGAAGACGCCTGGTGGTACTGGT 900 consensus_1024#1 ------------------------------------------------------------ consensus_1024#0 CCGGCAAGTTGATTAACCTGCAAGTCAAGGAATTGAAGCATGGGCAATGAGCCGATGCAG 960 consensus_1024#1 ------------------------------------------------------------ consensus_1024#0 GCTGGTATTGATCCAGAAAGGCTGTTGTTGGCAATGTTGAGGTAAGATAACAAAGGTGTG 1020 consensus_1024#1 ------------------------------------------------------------ consensus_1024#0 TTGTTGAACAGACTGTTTGGGATCGACCCAGTGAGGCCATTGTTCTGAATGTTGATGCTG 1080 consensus_1024#1 ------------------------------------------------------------ consensus_1024#0 CGAAGGCTGTGCAGGCCCTGCAGATCGGCTGGGATTTGTCCAGAGAGCTGGTTAACCGCG 1140 consensus_1024#1 --------GTGCAGGCCCTGCAGATCGGCTGGGATTTGTCCAGAGAGCTGGTTAACCGCG 52 **************************************************** consensus_1024#0 AGACGAAGAACGCCAAGCCTCGTGAGGTTCCCTATGGAGGCTGGGATGACCCCTGAGAGG 1200 consensus_1024#1 AGACGAAGAACGCCAAGCCTCGTGAGGTTCCCTATGGAGGCTGGGATGACCCCTGAGAGG 112 ************************************************************ consensus_1024#0 GCATTATTGCCAAGATCAAGGAGCTCGAGGCGATGCAGCCTTCCGATATCGTCTGGGATT 1260 consensus_1024#1 GCATTATTGCCAAGATCAAGGAGCTCGAGGCGATGCAGCCTTCCGATATCGTCTGGGATT 172 ************************************************************ consensus_1024#0 GAACCCGTGAGGTTTGTGATGGTGAGGTCAAGGACGGAGAGGAAAGATAGGTTACCGATG 1320 consensus_1024#1 GAACCCGTGAGGTTTGTGATGGTGAGGTTAAGGACGGAGAGGAAAGATAGGTTACCGATG 232 **************************** ******************************* consensus_1024#0 TGAGGGCTCAGCTTTCCTTGGAGGGGAACTCCGGGCAGCTCCACTCCGGTGACACGCTGC 1380 consensus_1024#1 TGAGGGCTCAGCTTTCCTTGGAGGGGAACTCCGGGCAGCTCCACTCCGGTGACACGCTGC 292 ************************************************************ consensus_1024#0 CACTGCCGCCGGCTGCAAGTGATCCCCATCCACCGGCAGAACGGCGTGCCGGCAGTCCAG 1440 consensus_1024#1 CACTGCCGCCGGCTGCAAGTGATCCCCATCCACCGGCAGAACGGCGTGCCGGCAGTCCAG 352 ************************************************************ consensus_1024#0 TTGGTGGCAAGAATGTTGTAGGGATCGGAGAGCTCACCTTTGAAAGCCAGCAGCGCAGCG 1500 consensus_1024#1 TTGGTGGCAAGAATGTTGTAGGGATCGGAGAGCTCACCTTTGAAAGCCAGCAGCGCAGCG 412 ************************************************************ consensus_1024#0 AGATCGCTGTCGCTGCCATTGCTCTTGCTCGTCCCTGGAGGAGAAGCAGCAGCAGCAGCA 1560 consensus_1024#1 AGATCGCTGTCGCTGCCATTGCTCTTGCTCGTCCCTGGAGGAGAAGCAGCAGCAGCAGCA 472 ************************************************************ consensus_1024#0 ACCACAGGGGACAAAGTGATCAACAGCAGAGCGGACATGATGATGCATACTGGAGATCCG 1620 consensus_1024#1 ACC--AGGGGACAAAGTGATCAACAGCAGAGCGGACATGATGATGCATACTGGAGATCCG 530 *** ******************************************************* consensus_1024#0 AGCGCCATGACGACGCTGAAGTGATGCTTTTGTGGCAATTAACTTTGCAACAAGCTAAGA 1680 consensus_1024#1 AGCGCCATGACGACGCTGAAGTGATGCTTTTGTGGCAATTAACTTTGCAACAAGCTAAGA 590 ************************************************************ consensus_1024#0 ACTAACAAAGCATTATATGTATTTCCCTCCTCCTGATTGGCTGACTGACGGTAATCAATG 1740 consensus_1024#1 ACTAACAAAGCATTATATGTATTTCCCTCCTCCTGATTGGCTGACTGACGGTAATCAATG 650 ************************************************************ consensus_1024#0 AGCCCTTGGATGTTGTTTTCTCTCCACATGTGGGATT-GTGGGGCATGAAACTTGTTTCT 1799 consensus_1024#1 AGCCCTTGGATGTTNGTTTCTCTCCACATGTGGGATTTGTGGGGCATGAAACTTGTTTCT 710 ************** ********************* ********************** consensus_1024#0 TTCACACTATTGACGAATCAAGACCTTGACAGATACAAGGTACATATAGCTATCTTTGCC 1859 consensus_1024#1 TTCACACTATTGACGAATCAAGACCTTGACAGATACAAGGTACATATAGCTATNCTTGCC 770 ***************************************************** ***** consensus_1024#0 GAATGAGTCGAATATATTGACTGTTGACCAATCATGCACGCACCGGTTTTGATTGGAACC 1919 consensus_1024#1 GAATGAGTCGA-TATATTGACTGTTGACCAATCNNAAANAAAAAAN---AAATNAANTAN 826 *********** ********************* * * ** consensus_1024#0 TTGTTTGAGCTTTCTTTTTTAAAGCTGGATCA 1951 consensus_1024#1 TTTTTTAAAAAAAAATNATAAAA--------- 849 ** *** * * * *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||