These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10241#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2173 fasta sequence [GCCGTCGGGGTCGCAGGTGCCGCTCAAGAAGCGGCACCAGCCGGAGAAGGGCGGAGGGAGAGGTGGTGGTGGTGGTGGGTGGAAGGAGGGCGACGACGATGACGACGACGACGACGACGACGAGCTCGACGAGGGGAGGCGCAGCGGCGATGACTCAGACAGCGCGCCGTCGGTCGGGAGCGACCTGTACAAGGACGAGGACGACAAGGAGCAGCTGGAGAAGATGTCGGAGCTGGACAGGGAGATGATCCTGGCGGAGCGCGGCGCGCGGATCGACGACTACAAGCTGAAGCAGCTGGCGAGGGCGTCGTCGTCGTCGTCCAAGGCGGACAAGTCGCGGAGGGACAGCAGCCCTCCGCCGCCGCCGAGCCGCGCGCGGTCGTCGGCCAGGACCGACAGGTCCGCCGCCAAGAGCGCGCTGGACGAGCTGCGGGCCAAGCGGATGAGGCAGCAGGACCCGGAGGGGTACCGTAACAGGTTCAAGGATTTGATCCCGCAGAGCGGCTCTCCGCCGAGGCGCAGGGCCGGAAGCCCGCCCAGCGACGGTAGTAATGATGGTGATAACAGGGGGAGGATCACCGATGAAACCCGGGATGATGAGTTTGATGAATCGCCAAGCAGGCTTGACCCTCTGAAGTTTGACGATGTGAAGAGTATAACCCTCAGGAGATCAAAGCTTGTGAAATGGTTCATGGAGCCGTTCTTTGAGGACCTTGTGTCTGGGTGCTTTGTGCGGCTTGGGATTGGCAAGTCAAAATCAGGGACCCCTGATTACAGGCTATGCATAGTTAGAAACGTGGATGCGAATGACCCTGACCGGAAGTACAAGTTGGAGGGCTACACGACGTGCAAGTACCTCAATGTTGTGTGGGACAATGAGGCTAATGCTGCTCGGTGGCAGATGACTCAAGTATCAGACTCCTTTCCCAGTGAAGAGGAGTTCAAGAAGTGGCTACAAGTGGCTGAGAAGAATGGTGTGCGAGTACCGACTCGGCAGGATGTATTGGAGAAGAAAGAAGCCATTCAACAGGCCTACAACTTTGTGTATTCAGCACATACTGTACAGAAGATGCTAAAAGAGAAGAAATCAGCTATCAGACGTCCTATCAATGTTGCTGCTGAGAAGGATCGGTTGAGGAATGAGTTGGATATGGCCATTGCCAGGAGGGATGAAGCTGAAGCAGAAAGGATCCGTTCAAAGCTCAATCAGCTGCAGAAGATGTCGAAGCCAATATCAAATAATGAGAAGGCTGCCAAGTTGGAGGCGATGAACAAGAAGAACCGTGCTGAGAACTTCAAGAACGCATCAGAAATGAAGCCCGTTAACACGAGTTTGAAGGTTGGAGAGGCTGGTTATGATCCCTTTTCAAGGAGATGGACAAGATCAAGAAATTACTACGCAGCAAAGCCTGAAGGAGAGAGCGCTGAAGTCCCCAACGGGAACGATGGCAGCGCAGTAGCTGGCGATGAAGATACGAAGAACGGGCCGCGAGGTGGTTCAGCAGCCACTGCAGCGGCTCTAGTGGCAGCTGCTGATGCCGGTAAGCTGGTTGATACCAATGCACCTGTAGATCTGGGAACGGAATCGAATTTGCTGCATAATTTTGAGCTCGGTATATCATTGGCCGGCCTGGAAGAATTCGGCGGTCCCAAGGGTCTCTTCGATGGTTACATGGCGAGGAAGCAGAAGATTGAAGCAACCATGGGTTACAAGGTCCCTGACAATGATGGAAGGAGGCATGCTCTAACTCTGACCGTCAGTGACTACAAAAGAAGACGGGGTTTACTCTGAACTTCTCAAGTTATCTGTGCCTCTGCCTGCTGTTCGATGGATTCATCTGCCTCTTTGGCCACAAAGTTCATCAGCTGATCGGCACCATGCCATTGTGACTACTTGTCCAGATCAATTTGCATTTTAGCCTTGAGTGTATGTAACATGATGAGACAAGCAAGGTTACACATTTTCTTTTCATAAACAGGACCTGTATGCCTGAATTGTGTTGATGACAATTTCCGCATTAATATTTGTGGAGTGAGTCCTTCTGTTATTTAGTTTGTTACCCTTGTTGCTCTGCATAAAACATTTATGCAGCGGATATTGGGAGACTAGACTAAGAGGTACAAATATTCTATGTTGTATACTTATATGCCAAAAGGAAAAAAAAAACATGTG] [+] EMBL AK069422 [GCCGTCGGGGTCGCAGGTGCCGCTCAAGAAGCGGCACCAGCCGGAGAAGGGCGGAGGGAGAGGTGGTGGTGGTGGTGGGTGGAAGGAGGGCGACGACGATGACGACGACGACGACGACGACGAGCTCGACGAGGGGAGGCGCAGCGGCGATGACTCAGACAGCGCGCCGTCGGTCGGGAGCGACCTGTACAAGGACGAGGACGACAAGGAGCAGCTGGAGAAGATGTCGGAGCTGGACAGGGAGATGATCCTGGCGGAGCGCGGCGCGCGGATCGACGACTACAAGCTGAAGCAGCTGGCGAGGGCGTCGTCGTCGTCGTCCAAGGCGGACAAGTCGCGGAGGGACAGCAGCCCTCCGCCGCCGCCGAGCCGCGCGCGGTCGTCGGCCAGGACCGACAGGTCCGCCGCCAAGAGCGCGCTGGACGAGCTGCGGGCCAAGCGGATGAGGCAGCAGGACCCGGAGGGGTACCGTAACAGGTTCAAGGATTTGATCCCGCAGAGCGGCTCTCCGCCGAGGCGCAGGGCCGGAAGCCCGCCCAGCGACGGTAGTAATGATGGTGATAACAGGGGGAGGATCACCGATGAAACCCGGGATGATGAGTTTGATGAATCGCCAAGCAGGCTTGACCCTCTGAAGTTTGACGATGTGAAGAGTATAACCCTCAGGAGATCAAAGCTTGTGAAATGGTTCATGGAGCCGTTCTTTGAGGACCTTGTGTCTGGGTGCTTTGTGCGGCTTGGGATTGGCAAGTCAAAATCAGGGACCCCTGATTACAGGCTATGCATAGTTAGAAACGTGGATGCGAATGACCCTGACCGGAAGTACAAGTTGGAGGGCTACACGACGTGCAAGTACCTCAATGTTGTGTGGGACAATGAGGCTAATGCTGCTCGGTGGCAGATGACTCAAGTATCAGACTCCTTTCCCAGTGAAGAGGAGTTCAAGAAGTGGCTACAAGTGGCTGAGAAGAATGGTGTGCGAGTACCGACTCGGCAGGATGTATTGGAGAAGAAAGAAGCCATTCAACAGGCCTACAACTTTGTGTATTCAGCACATACTGTACAGAAGATGCTAAAAGAGAAGAAATCAGCTATCAGACGTCCTATCAATGTTGCTGCTGAGAAGGATCGGTTGAGGAATGAGTTGGATATGGCCATTGCCAGGAGGGATGAAGCTGAAGCAGAAAGGATCCGTTCAAAGCTCAATCAGCTGCAGAAGATGTCGAAGCCAATATCAAATAATGAGAAGGCTGCCAAGTTGGAGGCGATGAACAAGAAGAACCGTGCTGAGAACTTCAAGAACGCATCAGAAATGAAGCCCGTTAACACGAGTTTGAAGGTTGGAGAGGCTGGTTATGATCCCTTTTCAAGGAGATGGACAAGATCAAGAAATTACTACGCAGCAAAGCCTGAAGGAGAGAGCGCTGAAGTCCCCAACGGGAACGATGGCAGCGCAGTAGCTGGCGATGAAGATACGAAGAACGGGCCGCGAGGTGGTTCAGCAGCCACTGCAGCGGCTCTAGTGGCAGCTGCTGATGCCGGTAAGCTGGTTGATACCAATGCACCTGTAGATCTGGGAACGGAATCGAATTTGCTGCATAATTTTGAGCTCGGTATATCATTGGCCGGCCTGGAAGAATTCGGCGGTCCCAAGGGTCTCTTCGATGGTTACATGGCGAGGAAGCAGAAGATTGAAGCAACCATGGGTTACAAGGTCCCTGACAATGATGGAAGGAGGCATGCTCTAACTCTGACCGTCAGTGACTACAAAAGAAGACGGGGTTTACTCTGAACTTCTCAAGTTATCTGTGCCTCTGCCTGCTGTTCGATGGATTCATCTGCCTCTTTGGCCACAAAGTTCATCAGCTGATCGGCACCATGCCATTGTGACTACTTGTCCAGATCAATTTGCATTTTAGCCTTGAGTGTATGTAACATGATGAGACAAGCAAGGTTACACATTTTCTTTTCATAAACAGGACCTGTATGCCTGAATTGTGTTGATGACAATTTCCGCATTAATATTTGTGGAGTGAGTCCTTCTGTTATTTAGTTTGTTACCCTTGTTGCTCTGCATAAAACATTTATGCAGCGGATATTGGGAGACTAGACTAAGAGGTACAAATATTCTATGTTGTATACTTATATGCCAAAAGGAAAAAAAAAACATGTG] consensusID : consensus_10241#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1871 fasta sequence [TTCCTCGAGCACTGTTGGCCTACTGGCAGGGAGATGATCCTGGCGGAGCGCGGCGCGCGGATCGACGACTACAAGCTGAAGCAGCTGGCGAGGGCGTCGTCGTCGTCGTCCAAGGCGGACAAGTCGCGGAGGGACAGCAGCCCTCCGCCGCCGCCGAGCCGCGCGCGGTCGTCGGCCAGGACCGACAGGTCCGCCGCCAAGAGCGCGCTGGACGAGCTGCGGGCCAAGCGGATGAGGCAGCAGGACCCGGAGGGGTACCGTAACAGGTTCAAGGATTTGATCCCGCAGAGCGGCTCTCCGCCGAGGCGCAGGGCCGGAAGCCCGCCCAGCGACGGTAGTAATGATGGTGATAACAGGGGGAGGATCACCGATGAAACCCGGGATGATGAGTTTGATGAATCGCCAAGCAGGCTTGACCCTCTGAAGTTTGACGATGTGAAGAGTATAACCCTCAGGAGATCAAAGCTTGTGAAATGGTTCATGGAGCCGTTCTTTGAGGACCTTGTGTCTGGGTGCTTTGTGCGGCTTGGGATTGGCAAGTCAAAATCAGGGACCCCTGATTACAGGCTATGCATAGTTAGAAACGTGGATGCGAATGACCCTGACCGGAAGTACAAGTTGGAGGGCTACACGACGTGCAAGTACCTCAATGTTGTGTGGGACAATGAGGCTAATGCTGCTCGGTGGCAGATGACTCAAGTATCAGACTCCTTTCCCAGTGAAGAGGAGTTCAAGAAGTGGCTACAAGTGGCTGAGAAGAATGGTGTGCGAGTACCGACTCGGCAGGATGTATTGGAGAAGAAAGAAGCCATTCAACAGGCCTACAACTTTGTGTATTCAGCACATACTGTACAGAAGATGCTAAAAGAGAAGAAATCAGCTATCAGACGTCCTATCAATGTTGCTGCTGAGAAGGATCGGTTGAGGAATGAGTTGGATATGGCCATTGCCAGGAGGGATGAAGCTGAAGCAGAAAGGATCCGTTCAAAGCTCAATCAGCTGCAGAAGATGTCGAAGCCAATATCAAATAATGA-GAAGGCTG-CCAAGTTGGA-GGCGATGAACAA-GAAGAACCGTGCTGAGAACTTCAAGAACGCATCAGAAATGAAGCCCGTTAACACGAGTTTGAAGGTTGGAGAGGCTGGTTATGATCCCTTTTCAAGGAGATGGACAAGATCAAGAAATTACTACGCAGCAAAGCCTGAAGGAGAGAGCGCTGAAGTCCCCAACGGGAACGATGGCAGCGCAGTAGCTGGCGATGAAGATACGAAGAACGGGCCGCGAGGTGGTTCAGCAGCCACTGCAGCGGCTCTAGTGGCAGCTGCTGATGCCGGTAAGCTGGTTGATACCAATGCACCTGTAGATCTGGGAACGGAATCGAATTTGCTGCATAATTTTGAGCTCGGTATATCATTGGCCGGCCTGGAAGAATTCGGCGGTCCCAAGGGTCTCTTCGATGGTTACATGGCGAGGAAGCAGAAGATTGAAGCAACCATGGGTTACAAGGTCCCTGACAATGATGGAAGGAGGCATGCTCTAACTCTGACCGTCAGTGACTACAAAAGAAGACGGGGTTTACTCTGAACTTCTCAAGTTATCTGTGCCTCTGCCTGCTGTTCGATGGATTCATCTGCCTCTTTGGCCACAAAGTTCATCAGCTGATCGGCACCATGCCATTGTGACTACTTGTCCAGATCAATTTGCATTTTAGCCTTGAGTGTATGTAACATGATGAGACAAGCAAGGTTACACATTTTCTTTTCATAAACAGGACCTGTATGCCTGAATTGTGTTGATGACAATTTCCGCATTAATATTTGTGGAGTGAGTCCTTCTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACAT] [+] EMBL AK109358 [TTCCTCGAGCACTGTTGGCCTACTGGCAGGGAGATGATCCTGGCGGAGCGCGGCGCGCGGATCGACGACTACAAGCTGAAGCAGCTGGCGAGGGCGTCGTCGTCGTCGTCCAAGGCGGACAAGTCGCGGAGGGACAGCAGCCCTCCGCCGCCGCCGAGCCGCGCGCGGTCGTCGGCCAGGACCGACAGGTCCGCCGCCAAGAGCGCGCTGGACGAGCTGCGGGCCAAGCGGATGAGGCAGCAGGACCCGGAGGGGTACCGTAACAGGTTCAAGGATTTGATCCCGCAGAGCGGCTCTCCGCCGAGGCGCAGGGCCGGAAGCCCGCCCAGCGACGGTAGTAATGATGGTGATAACAGGGGGAGGATCACCGATGAAACCCGGGATGATGAGTTTGATGAATCGCCAAGCAGGCTTGACCCTCTGAAGTTTGACGATGTGAAGAGTATAACCCTCAGGAGATCAAAGCTTGTGAAATGGTTCATGGAGCCGTTCTTTGAGGACCTTGTGTCTGGGTGCTTTGTGCGGCTTGGGATTGGCAAGTCAAAATCAGGGACCCCTGATTACAGGCTATGCATAGTTAGAAACGTGGATGCGAATGACCCTGACCGGAAGTACAAGTTGGAGGGCTACACGACGTGCAAGTACCTCAATGTTGTGTGGGACAATGAGGCTAATGCTGCTCGGTGGCAGATGACTCAAGTATCAGACTCCTTTCCCAGTGAAGAGGAGTTCAAGAAGTGGCTACAAGTGGCTGAGAAGAATGGTGTGCGAGTACCGACTCGGCAGGATGTATTGGAGAAGAAAGAAGCCATTCAACAGGCCTACAACTTTGTGTATTCAGCACATACTGTACAGAAGATGCTAAAAGAGAAGAAATCAGCTATCAGACGTCCTATCAATGTTGCTGCTGAGAAGGATCGGTTGAGGAATGAGTTGGATATGGCCATTGCCAGGAGGGATGAAGCTGAAGCAGAAAGGATCCGTTCAAAGCTCAATCAGCTGCAGAAGATGTCGAAGCCAATATCAAATAATGA GAAGGCTG CCAAGTTGGA GGCGATGAACAA GAAGAACCGTGCTGAGAACTTCAAGAACGCATCAGAAATGAAGCCCGTTAACACGAGTTTGAAGGTTGGAGAGGCTGGTTATGATCCCTTTTCAAGGAGATGGACAAGATCAAGAAATTACTACGCAGCAAAGCCTGAAGGAGAGAGCGCTGAAGTCCCCAACGGGAACGATGGCAGCGCAGTAGCTGGCGATGAAGATACGAAGAACGGGCCGCGAGGTGGTTCAGCAGCCACTGCAGCGGCTCTAGTGGCAGCTGCTGATGCCGGTAAGCTGGTTGATACCAATGCACCTGTAGATCTGGGAACGGAATCGAATTTGCTGCATAATTTTGAGCTCGGTATATCATTGGCCGGCCTGGAAGAATTCGGCGGTCCCAAGGGTCTCTTCGATGGTTACATGGCGAGGAAGCAGAAGATTGAAGCAACCATGGGTTACAAGGTCCCTGACAATGATGGAAGGAGGCATGCTCTAACTCTGACCGTCAGTGACTACAAAAGAAGACGGGGTTTACTCTGAACTTCTCAAGTTATCTGTGCCTCTGCCTGCTGTTCGATGGATTCATCTGCCTCTTTGGCCACAAAGTTCATCAGCTGATCGGCACCATGCCATTGTGACTACTTGTCCAGATCAATTTGCATTTTAGCCTTGAGTGTATGTAACATGATGAGACAAGCAAGGTTACACATTTTCTTTTCATAAACAGGACCTGTATGCCTGAATTGTGTTGATGACAATTTCCGCATTAATATTTGTGGAGTGAGTCCTTCTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACAT] [+] EMBL C26472 [ CAGACTCCTTTCCCAGTGAAGAGGAGTTCAAGAAGTGGCTACAAGTGGCTGAGAAGAATGGTGTGCGAGTACCGACTCGGCAGGATGTATTGGAGAAGAAAGAAGCCATTCAACAGGCCTACAACTTTGTGTATTCAGCACATACTGTACAGAAGATGCTAAAAGAGAAGAAATCAGCTATCAGACGTCCTATCAATGTTGCTGCTGAGAAGGATCGGTTGAGGAATGAGTTGGATATGGCCATTGCCAGGAGGGATGAAGCTGAAGCAGAAAGGATCCGTTCAAAGCTCAATCAGCTGCAGAAGATGTCGAAGCCAATATCAAATAATGAGGAAGGCTGCCCAAGTTNGAGGGCGATGACCAAGGAGGANCCGTGCTTAGGACct ] [+] EMBL BI795873 [ GAAGCAACCATGGGTTACAAGGTCCTGGACAATGATGGAAGGAGGCATGCTCTAACTCTGACCGTCAGTGACTACAAAAGAAGACGGGGTTTACTCTGAACTTCTCAAGTTATCTGTGCCTCTGCCTGCTGTTCGATGGATTCATCTGCCTCTTTGGCCAC AAGTTCATCAGCTGATCGGCACCATGCCATTGTGACTACTTGTCCAGATCAATTTGCATTTTAGCCTTGAGTGTATGTAACATGATGAGACAAGCAAGGTTACACATTTTCTTTTCATAAACAGGACCTGTATGCCTGAATTGTGTTGATGAC ATTTCCGCATTAAaaa ] consensusID : consensus_10241#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence [GAAGAACGGGCCGCGAGGTGGTTCAGCAGCCACTGAGCGGCTCTAGTGGCAGCTGCTGATGCCGGTAAGCTGGTTGATACCAATGCACCTGTAGATCTGGGAACGGAATCGAATTTGCTGCATAATTTTGAGCTCGGTATATTATTGGCCGGCCTGGAAGAATTCGGCGGTCCCAAGGGTCTCTTCGATGGTTACATGGCGAGGAAGCAGAAGATTGAAGCAACCATGGGTTACAAGGTCCCTGACAATGATGGAAGGAGGCATGCTCTAACTCTGACCGTCAGTGACTACAAAAGAAGACGGGGTTTACTCTGAACTTCTCAAGTTATCTGTGCCTCTGCCTGCTGTTCGATGGATTCATCTGCCTCTTTGGCCACAAAGTTCATCAGCTGATCGGCACCATGCCATTGAGCAAGGTTACACATTTTCTTTTCATAAACAGGACCTGTATGCCTGAATTGTGTTGATGACAATTTCCGCATTAATATTTGTGGAGTGAGTCCTTCTGTTATTTAGTTTGTTACCCTTGTTGCTCTGCATAAAACATTTATGCAGCGGATATTGGGAGACTAGACTAAGAGGTACAAATATTCTATGGTGNATACTTATATGCCAAAAGGAAAAAAAAAACGTGTC] [+] EMBL CA764715 [GAAGAACGGGCCGCGAGGTGGTTCAGCAGCCACTGAGCGGCTCTAGTGGCAGCTGCTGATGCCGGTAAGCTGGTTGATACCAATGCACCTGTAGATCTGGGAACGGAATCGAATTTGCTGCATAATTTTGAGCTCGGTATATTATTGGCCGGCCTGGAAGAATTCGGCGGTCCCAAGGGTCTCTTCGATGGTTACATGGCGAGGAAGCAGAAGATTGAAGCAACCATGGGTTACAAGGTCCCTGACAATGATGGAAGGAGGCATGCTCTAACTCTGACCGTCAGTGACTACAAAAGAAGACGGGGTTTACTCTGAACTTCTCAAGTTATCTGTGCCTCTGCCTGCTGTTCGATGGATTCATCTGCCTCTTTGGCCACAAAGTTCATCAGCTGATCGGCACCATGCCATTGAGCAAGGTTACACATTTTCTTTTCATAAACAGGACCTGTATGCCTGAATTGTGTTGATGACAATTTCCGCATTAATATTTGTGGAGTGAGTCCTTCTGTTATTTAGTTTGTTACCCTTGTTGCTCTGCATAAAACATTTATGCAGCGGATATTGGGAGACTAGACTAAGAGGTACAAATATTCTATGGTGNATACTTATATGCCAAAAGGAAAAAAAAAACGTGTC] consensusID : consensus_10241#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence [AGCCAGAGGACGAGACAAGGGGGGAAGAATTNGGCGGTCNCAAGGGTCTCTTCGATGGTTACATGGCGAGGAAGCAGAAGATTGAAGCAACCATGGTTACAAGGTCCCTGACAATGATGGAAGGAGGCATGCTCTAACTCTGACCGTCAGTGACTACAAAAGAAGACGGGGTTTACTCTGAACTTCTCAAATTATCTGTGCCTCTGCCTGCTGTTCGATGGATTCATCTGCCTCTTTGGCCACAAAGTTCATCAGCTGATCGGCACCATGCCATTGAGCAAGGTTACACATTTTCTTTTCATAAACAGGACCTGTATGCCTGAATTGTGTTGATGACAATTTCCGCATTAATATTTGTGGAGTGAGTCCTTCTGTTATTTAGTTTGTTACCCTTGTTGCTCTGCATAAAACATTTATGCAGCGGATATTGGGAGACTAGACTAAGAGGTACAAATATTCTATGTTGTATACTTATATGCCAAAAGGAAAAAAAAAACGTGTCAAGTTATGAAAGTTCCTAATGTTCCTTAATTAGTTCGATCTAAATCATTATATCAATGTTGATTATCAGATTCTTATTTCTATNCTACAAAAAAAAAAA] [-] EMBL CA759647 [AGCCAGAGGACGAGACAAGGGGGGAAGAATTNGGCGGTCNCAAGGGTCTCTTCGATGGTTACATGGCGAGGAAGCAGAAGATTGAAGCAACCATGGTTACAAGGTCCCTGACAATGATGGAAGGAGGCATGCTCTAACTCTGACCGTCAGTGACTACAAAAGAAGACGGGGTTTACTCTGAACTTCTCAAATTATCTGTGCCTCTGCCTGCTGTTCGATGGATTCATCTGCCTCTTTGGCCACAAAGTTCATCAGCTGATCGGCACCATGCCATTGAGCAAGGTTACACATTTTCTTTTCATAAACAGGACCTGTATGCCTGAATTGTGTTGATGACAATTTCCGCATTAATATTTGTGGAGTGAGTCCTTCTGTTATTTAGTTTGTTACCCTTGTTGCTCTGCATAAAACATTTATGCAGCGGATATTGGGAGACTAGACTAAGAGGTACAAATATTCTATGTTGTATACTTATATGCCAAAAGGAAAAAAAAAACGTGTCAAGTTATGAAAGTTCCTAATGTTCCTTAATTAGTTCGATCTAAATCATTATATCAATGTTGATTATCAGATTCTTATTTCTATNCTACAAAAAAAAAAA] consensusID : consensus_10241#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 337 fasta sequence [GAATTCGGNNNGAGATGATGGAAGGAGGCATGCTCTAACTCTGACCGTCAGTGACTACAAAAGGAAGACGGGGTTTACTCTGAACTTCTCAAGTTATCTGTGCCTCTGCCTGCTGTTCGATGGATTCTCTGCCTCTTTGGCCACAAAGTTCATCAGCTGATCGGCACCATGCCATTGTGACTACTTGTCCAAATCAATTTGCATNTTAGCCTTGAGTGTATGTAACATGATNAGACAAGCAAGGTTACACATTTCCTTTTCATAAACAGGACCTGTATGCCTGAATTGTGTTGATGACAATTTCCGCATTAATATTTGTGGAGTGAGTCCTTCTGTT] [+] EMBL AA751883 [GAATTCGGNNNGAGATGATGGAAGGAGGCATGCTCTAACTCTGACCGTCAGTGACTACAAAAGGAAGACGGGGTTTACTCTGAACTTCTCAAGTTATCTGTGCCTCTGCCTGCTGTTCGATGGATTCTCTGCCTCTTTGGCCACAAAGTTCATCAGCTGATCGGCACCATGCCATTGTGACTACTTGTCCAAATCAATTTGCATNTTAGCCTTGAGTGTATGTAACATGATNAGACAAGCAAGGTTACACATTTCCTTTTCATAAACAGGACCTGTATGCCTGAATTGTGTTGATGACAATTTCCGCATTAATATTTGTGGAGTGAGTCCTTCTGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10241#2 ------------------------------------------------------------ consensus_10241#3 ------------------------------------------------------------ consensus_10241#1 ------------------------------------------------------------ consensus_10241#4 ------------------------------------------------------------ consensus_10241#0 GCCGTCGGGGTCGCAGGTGCCGCTCAAGAAGCGGCACCAGCCGGAGAAGGGCGGAGGGAG 60 consensus_10241#2 ------------------------------------------------------------ consensus_10241#3 ------------------------------------------------------------ consensus_10241#1 ------------------------------------------------------------ consensus_10241#4 ------------------------------------------------------------ consensus_10241#0 AGGTGGTGGTGGTGGTGGGTGGAAGGAGGGCGACGACGATGACGACGACGACGACGACGA 120 consensus_10241#2 ------------------------------------------------------------ consensus_10241#3 ------------------------------------------------------------ consensus_10241#1 ------------------------------------------------------------ consensus_10241#4 ------------------------------------------------------------ consensus_10241#0 CGAGCTCGACGAGGGGAGGCGCAGCGGCGATGACTCAGACAGCGCGCCGTCGGTCGGGAG 180 consensus_10241#2 ------------------------------------------------------------ consensus_10241#3 ------------------------------------------------------------ consensus_10241#1 -------------------------------TTCCTCGAGCACTGTTGGCCTACTGGCAG 29 consensus_10241#4 ------------------------------------------------------------ consensus_10241#0 CGACCTGTACAAGGACGAGGACGACAAGGAGCAGCTGGAGAAGATGTCGGAGCTGGACAG 240 consensus_10241#2 ------------------------------------------------------------ consensus_10241#3 ------------------------------------------------------------ consensus_10241#1 GGAGATGATCCTGGCGGAGCGCGGCGCGCGGATCGACGACTACAAGCTGAAGCAGCTGGC 89 consensus_10241#4 ------------------------------------------------------------ consensus_10241#0 GGAGATGATCCTGGCGGAGCGCGGCGCGCGGATCGACGACTACAAGCTGAAGCAGCTGGC 300 consensus_10241#2 ------------------------------------------------------------ consensus_10241#3 ------------------------------------------------------------ consensus_10241#1 GAGGGCGTCGTCGTCGTCGTCCAAGGCGGACAAGTCGCGGAGGGACAGCAGCCCTCCGCC 149 consensus_10241#4 ------------------------------------------------------------ consensus_10241#0 GAGGGCGTCGTCGTCGTCGTCCAAGGCGGACAAGTCGCGGAGGGACAGCAGCCCTCCGCC 360 consensus_10241#2 ------------------------------------------------------------ consensus_10241#3 ------------------------------------------------------------ consensus_10241#1 GCCGCCGAGCCGCGCGCGGTCGTCGGCCAGGACCGACAGGTCCGCCGCCAAGAGCGCGCT 209 consensus_10241#4 ------------------------------------------------------------ consensus_10241#0 GCCGCCGAGCCGCGCGCGGTCGTCGGCCAGGACCGACAGGTCCGCCGCCAAGAGCGCGCT 420 consensus_10241#2 ------------------------------------------------------------ consensus_10241#3 ------------------------------------------------------------ consensus_10241#1 GGACGAGCTGCGGGCCAAGCGGATGAGGCAGCAGGACCCGGAGGGGTACCGTAACAGGTT 269 consensus_10241#4 ------------------------------------------------------------ consensus_10241#0 GGACGAGCTGCGGGCCAAGCGGATGAGGCAGCAGGACCCGGAGGGGTACCGTAACAGGTT 480 consensus_10241#2 ------------------------------------------------------------ consensus_10241#3 ------------------------------------------------------------ consensus_10241#1 CAAGGATTTGATCCCGCAGAGCGGCTCTCCGCCGAGGCGCAGGGCCGGAAGCCCGCCCAG 329 consensus_10241#4 ------------------------------------------------------------ consensus_10241#0 CAAGGATTTGATCCCGCAGAGCGGCTCTCCGCCGAGGCGCAGGGCCGGAAGCCCGCCCAG 540 consensus_10241#2 ------------------------------------------------------------ consensus_10241#3 ------------------------------------------------------------ consensus_10241#1 CGACGGTAGTAATGATGGTGATAACAGGGGGAGGATCACCGATGAAACCCGGGATGATGA 389 consensus_10241#4 ------------------------------------------------------------ consensus_10241#0 CGACGGTAGTAATGATGGTGATAACAGGGGGAGGATCACCGATGAAACCCGGGATGATGA 600 consensus_10241#2 ------------------------------------------------------------ consensus_10241#3 ------------------------------------------------------------ consensus_10241#1 GTTTGATGAATCGCCAAGCAGGCTTGACCCTCTGAAGTTTGACGATGTGAAGAGTATAAC 449 consensus_10241#4 ------------------------------------------------------------ consensus_10241#0 GTTTGATGAATCGCCAAGCAGGCTTGACCCTCTGAAGTTTGACGATGTGAAGAGTATAAC 660 consensus_10241#2 ------------------------------------------------------------ consensus_10241#3 ------------------------------------------------------------ consensus_10241#1 CCTCAGGAGATCAAAGCTTGTGAAATGGTTCATGGAGCCGTTCTTTGAGGACCTTGTGTC 509 consensus_10241#4 ------------------------------------------------------------ consensus_10241#0 CCTCAGGAGATCAAAGCTTGTGAAATGGTTCATGGAGCCGTTCTTTGAGGACCTTGTGTC 720 consensus_10241#2 ------------------------------------------------------------ consensus_10241#3 ------------------------------------------------------------ consensus_10241#1 TGGGTGCTTTGTGCGGCTTGGGATTGGCAAGTCAAAATCAGGGACCCCTGATTACAGGCT 569 consensus_10241#4 ------------------------------------------------------------ consensus_10241#0 TGGGTGCTTTGTGCGGCTTGGGATTGGCAAGTCAAAATCAGGGACCCCTGATTACAGGCT 780 consensus_10241#2 ------------------------------------------------------------ consensus_10241#3 ------------------------------------------------------------ consensus_10241#1 ATGCATAGTTAGAAACGTGGATGCGAATGACCCTGACCGGAAGTACAAGTTGGAGGGCTA 629 consensus_10241#4 ------------------------------------------------------------ consensus_10241#0 ATGCATAGTTAGAAACGTGGATGCGAATGACCCTGACCGGAAGTACAAGTTGGAGGGCTA 840 consensus_10241#2 ------------------------------------------------------------ consensus_10241#3 ------------------------------------------------------------ consensus_10241#1 CACGACGTGCAAGTACCTCAATGTTGTGTGGGACAATGAGGCTAATGCTGCTCGGTGGCA 689 consensus_10241#4 ------------------------------------------------------------ consensus_10241#0 CACGACGTGCAAGTACCTCAATGTTGTGTGGGACAATGAGGCTAATGCTGCTCGGTGGCA 900 consensus_10241#2 ------------------------------------------------------------ consensus_10241#3 ------------------------------------------------------------ consensus_10241#1 GATGACTCAAGTATCAGACTCCTTTCCCAGTGAAGAGGAGTTCAAGAAGTGGCTACAAGT 749 consensus_10241#4 ------------------------------------------------------------ consensus_10241#0 GATGACTCAAGTATCAGACTCCTTTCCCAGTGAAGAGGAGTTCAAGAAGTGGCTACAAGT 960 consensus_10241#2 ------------------------------------------------------------ consensus_10241#3 ------------------------------------------------------------ consensus_10241#1 GGCTGAGAAGAATGGTGTGCGAGTACCGACTCGGCAGGATGTATTGGAGAAGAAAGAAGC 809 consensus_10241#4 ------------------------------------------------------------ consensus_10241#0 GGCTGAGAAGAATGGTGTGCGAGTACCGACTCGGCAGGATGTATTGGAGAAGAAAGAAGC 1020 consensus_10241#2 ------------------------------------------------------------ consensus_10241#3 ------------------------------------------------------------ consensus_10241#1 CATTCAACAGGCCTACAACTTTGTGTATTCAGCACATACTGTACAGAAGATGCTAAAAGA 869 consensus_10241#4 ------------------------------------------------------------ consensus_10241#0 CATTCAACAGGCCTACAACTTTGTGTATTCAGCACATACTGTACAGAAGATGCTAAAAGA 1080 consensus_10241#2 ------------------------------------------------------------ consensus_10241#3 ------------------------------------------------------------ consensus_10241#1 GAAGAAATCAGCTATCAGACGTCCTATCAATGTTGCTGCTGAGAAGGATCGGTTGAGGAA 929 consensus_10241#4 ------------------------------------------------------------ consensus_10241#0 GAAGAAATCAGCTATCAGACGTCCTATCAATGTTGCTGCTGAGAAGGATCGGTTGAGGAA 1140 consensus_10241#2 ------------------------------------------------------------ consensus_10241#3 ------------------------------------------------------------ consensus_10241#1 TGAGTTGGATATGGCCATTGCCAGGAGGGATGAAGCTGAAGCAGAAAGGATCCGTTCAAA 989 consensus_10241#4 ------------------------------------------------------------ consensus_10241#0 TGAGTTGGATATGGCCATTGCCAGGAGGGATGAAGCTGAAGCAGAAAGGATCCGTTCAAA 1200 consensus_10241#2 ------------------------------------------------------------ consensus_10241#3 ------------------------------------------------------------ consensus_10241#1 GCTCAATCAGCTGCAGAAGATGTCGAAGCCAATATCAAATAATGAGAAGGCTGCCAAGTT 1049 consensus_10241#4 ------------------------------------------------------------ consensus_10241#0 GCTCAATCAGCTGCAGAAGATGTCGAAGCCAATATCAAATAATGAGAAGGCTGCCAAGTT 1260 consensus_10241#2 ------------------------------------------------------------ consensus_10241#3 ------------------------------------------------------------ consensus_10241#1 GGAGGCGATGAACAAGAAGAACCGTGCTGAGAACTTCAAGAACGCATCAGAAATGAAGCC 1109 consensus_10241#4 ------------------------------------------------------------ consensus_10241#0 GGAGGCGATGAACAAGAAGAACCGTGCTGAGAACTTCAAGAACGCATCAGAAATGAAGCC 1320 consensus_10241#2 ------------------------------------------------------------ consensus_10241#3 ------------------------------------------------------------ consensus_10241#1 CGTTAACACGAGTTTGAAGGTTGGAGAGGCTGGTTATGATCCCTTTTCAAGGAGATGGAC 1169 consensus_10241#4 ------------------------------------------------------------ consensus_10241#0 CGTTAACACGAGTTTGAAGGTTGGAGAGGCTGGTTATGATCCCTTTTCAAGGAGATGGAC 1380 consensus_10241#2 ------------------------------------------------------------ consensus_10241#3 ------------------------------------------------------------ consensus_10241#1 AAGATCAAGAAATTACTACGCAGCAAAGCCTGAAGGAGAGAGCGCTGAAGTCCCCAACGG 1229 consensus_10241#4 ------------------------------------------------------------ consensus_10241#0 AAGATCAAGAAATTACTACGCAGCAAAGCCTGAAGGAGAGAGCGCTGAAGTCCCCAACGG 1440 consensus_10241#2 -------------------------------------GAAGAACGGGCCGCGAGGTGGTT 23 consensus_10241#3 ------------------------------------------------------------ consensus_10241#1 GAACGATGGCAGCGCAGTAGCTGGCGATGAAGATACGAAGAACGGGCCGCGAGGTGGTTC 1289 consensus_10241#4 ------------------------------------------------------------ consensus_10241#0 GAACGATGGCAGCGCAGTAGCTGGCGATGAAGATACGAAGAACGGGCCGCGAGGTGGTTC 1500 consensus_10241#2 CAGCAGCCACTGAGCGGCTCTAGTGGCAGCTGCTGATGCCGGTAAGCTGGTTGATACCAA 83 consensus_10241#3 ------------------------------------------------------------ consensus_10241#1 AGCAGCCACTGCAGCGGCTCTAGTGGCAGCTGCTGATGCCGGTAAGCTGGTTGATACCAA 1349 consensus_10241#4 ------------------------------------------------------------ consensus_10241#0 AGCAGCCACTGCAGCGGCTCTAGTGGCAGCTGCTGATGCCGGTAAGCTGGTTGATACCAA 1560 consensus_10241#2 TGCACCTGTAGATCTGGGAACGGAATCGAATTTGCTGCATAATTTTGAGCTCGGTATATT 143 consensus_10241#3 -----------------------------------------------AGC-CAGAGGACG 12 consensus_10241#1 TGCACCTGTAGATCTGGGAACGGAATCGAATTTGCTGCATAATTTTGAGCTCGGTATATC 1409 consensus_10241#4 ------------------------------------------------------------ consensus_10241#0 TGCACCTGTAGATCTGGGAACGGAATCGAATTTGCTGCATAATTTTGAGCTCGGTATATC 1620 consensus_10241#2 ATTGGCCGGCCTGGAAGAATTCGGCGGTCCCAAGGGTCTCTTCGATGGTTACATGGCGAG 203 consensus_10241#3 A--GACAAGGGGGGAAGAATTNGGCGGTCNCAAGGGTCTCTTCGATGGTTACATGGCGAG 70 consensus_10241#1 ATTGGCCGGCCTGGAAGAATTCGGCGGTCCCAAGGGTCTCTTCGATGGTTACATGGCGAG 1469 consensus_10241#4 ------------------------------------------------------------ consensus_10241#0 ATTGGCCGGCCTGGAAGAATTCGGCGGTCCCAAGGGTCTCTTCGATGGTTACATGGCGAG 1680 consensus_10241#2 GAAGCAGAAGATTGAAGCAACCATGGGTTACAAGGTCCCTGACAATGATGGAAGGAGGCA 263 consensus_10241#3 GAAGCAGAAGATTGAAGCAACCATGG-TTACAAGGTCCCTGACAATGATGGAAGGAGGCA 129 consensus_10241#1 GAAGCAGAAGATTGAAGCAACCATGGGTTACAAGGTCCCTGACAATGATGGAAGGAGGCA 1529 consensus_10241#4 ------------------------------GAATTCGGNNNGAGATGATGGAAGGAGGCA 30 consensus_10241#0 GAAGCAGAAGATTGAAGCAACCATGGGTTACAAGGTCCCTGACAATGATGGAAGGAGGCA 1740 ** **************** consensus_10241#2 TGCTCTAACTCTGACCGTCAGTGACTACAAAAG-AAGACGGGGTTTACTCTGAACTTCTC 322 consensus_10241#3 TGCTCTAACTCTGACCGTCAGTGACTACAAAAG-AAGACGGGGTTTACTCTGAACTTCTC 188 consensus_10241#1 TGCTCTAACTCTGACCGTCAGTGACTACAAAAG-AAGACGGGGTTTACTCTGAACTTCTC 1588 consensus_10241#4 TGCTCTAACTCTGACCGTCAGTGACTACAAAAGGAAGACGGGGTTTACTCTGAACTTCTC 90 consensus_10241#0 TGCTCTAACTCTGACCGTCAGTGACTACAAAAG-AAGACGGGGTTTACTCTGAACTTCTC 1799 ********************************* ************************** consensus_10241#2 AAGTTATCTGTGCCTCTGCCTGCTGTTCGATGGATTCATCTGCCTCTTTGGCCACAAAGT 382 consensus_10241#3 AAATTATCTGTGCCTCTGCCTGCTGTTCGATGGATTCATCTGCCTCTTTGGCCACAAAGT 248 consensus_10241#1 AAGTTATCTGTGCCTCTGCCTGCTGTTCGATGGATTCATCTGCCTCTTTGGCCACAAAGT 1648 consensus_10241#4 AAGTTATCTGTGCCTCTGCCTGCTGTTCGATGGATTC-TCTGCCTCTTTGGCCACAAAGT 149 consensus_10241#0 AAGTTATCTGTGCCTCTGCCTGCTGTTCGATGGATTCATCTGCCTCTTTGGCCACAAAGT 1859 ** ********************************** ********************** consensus_10241#2 TCATCAGCTGATCGGCACCATGCCATTGAGCAAGGTTACACATTTTCTTTTCATAAACAG 442 consensus_10241#3 TCATCAGCTGATCGGCACCATGCCATTGAGCAAGGTTACACATTTTCTTTTCATAAACAG 308 consensus_10241#1 TCATCAGCTGATCGGCACCATGCCATTGTGACTACTTGTCCAGATCAATTT-GCATTTTA 1707 consensus_10241#4 TCATCAGCTGATCGGCACCATGCCATTGTGACTACTTGTCCAAATCAATTT-GCATNTTA 208 consensus_10241#0 TCATCAGCTGATCGGCACCATGCCATTGTGACTACTTGTCCAGATCAATTT-GCATTTTA 1918 **************************** * ** ** * *** * consensus_10241#2 GACCTGTATGCCTGAATTGTGTTGATGACAAT-----TTCCGCATTAATATTTGTGGAGT 497 consensus_10241#3 GACCTGTATGCCTGAATTGTGTTGATGACAAT-----TTCCGCATTAATATTTGTGGAGT 363 consensus_10241#1 GCCTTGAGTGTATGTAACATGATGA-GACAAGCAAGGTTACACATTTTCTTTTCATAAAC 1766 consensus_10241#4 GCCTTGAGTGTATGTAACATGATNA-GACAAGCAAGGTTACACATTTCCTTTTCATAAAC 267 consensus_10241#0 GCCTTGAGTGTATGTAACATGATGA-GACAAGCAAGGTTACACATTTTCTTTTCATAAAC 1977 * * ** ** ** * ** * * ***** ** * **** *** * consensus_10241#2 GAGTCCTTCTGTTATTTAGTTTGTTACCCTTGTTGCTCTGCATAAAACATTTATGCAGCG 557 consensus_10241#3 GAGTCCTTCTGTTATTTAGTTTGTTACCCTTGTTGCTCTGCATAAAACATTTATGCAGCG 423 consensus_10241#1 AGGACCTGTATGCCTGAATTGTGTTGATGACAAT-TTCCGCATTAA-TATTTGTGGAGTG 1824 consensus_10241#4 AGGACCTGTATGCCTGAATTGTGTTGATGACAAT-TTCCGCATTAA-TATTTGTGGAGTG 325 consensus_10241#0 AGGACCTGTATGCCTGAATTGTGTTGATGACAAT-TTCCGCATTAA-TATTTGTGGAGTG 2035 * *** * * * **** * ** **** ** **** ** ** * consensus_10241#2 GATA-TTGGGAGACTAGACTAAGAGGTACAAATATTCTATGGTGNATACTTATATGCCAA 616 consensus_10241#3 GATA-TTGGGAGACTAGACTAAGAGGTACAAATATTCTATGTTGTATACTTATATGCCAA 482 consensus_10241#1 AGTCCTTCTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACAT------------- 1871 consensus_10241#4 AGTCCTTCTGTT------------------------------------------------ 337 consensus_10241#0 AGTCCTTCTGTTATTTAGTTTGTTACCCTTGTTGCTCTGCATAAAACATTTATGCAGCGG 2095 * ** * consensus_10241#2 AAGGAAAAAAAAAACGTGTC---------------------------------------- 636 consensus_10241#3 AAGGAAAAAAAAAACGTGTCAAGTTATGAAAGTTCCTAATGTTCCTTAATTAGTTCGATC 542 consensus_10241#1 ------------------------------------------------------------ consensus_10241#4 ------------------------------------------------------------ consensus_10241#0 ATATTGGGAGACTAGACTAAGAGGTACAAATATTCTATGTTGTATACTTATATGCCAAAA 2155 consensus_10241#2 ----------------------------------------------------------- consensus_10241#3 TAAATCATTATATCAATGTTGATTATCAGATTCTTATTTCTATNCTACAAAAAAAAAAA 601 consensus_10241#1 ----------------------------------------------------------- consensus_10241#4 ----------------------------------------------------------- consensus_10241#0 GGAAAAAAAAAACATGTG----------------------------------------- 2173 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||