These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10242#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1961 fasta sequence [AGAAACAGAGAGATCTCCCGTCTCGTCGTCTCCTCCGCTCCTTCCGCCTCCCCAACACGAGTCGCGCCGCCGATCTCAGCAGGGGAGGGGAGGGGAGGGGATCCTGGTGAGCAAATATGGATGGACTGGTAGAGAATTTTGACGCAGATGATCTCGGCGAAATGCCTCAGAATCATTATAATGAAGAACAACTGATCCCCTACAGCGATGTGTCACATCCTTACAACGAAGAACCCGATAACATGGACAACGTAGAAGAGGGGAACCCATACATTCAGCAAGTGAGTTTGTACAGTGAAGAACCAGAGAATCAGTACAATGAGGAGCCATCAAACCCTTATCAGGAAGAGTCGGATAATGCATACAATGGGGAAGTGAAGCAACAGGATAGCTTGCCGGTAGAGGCTGATAAGAAATGGCCTGGTTGGCCAGGAGAGAGTGTTTTTCGTATACTGATCCCAGCCCAGAAGGTAGGTGCTATCATTGGCCGCAAAGGGGAGTTTATCAAAAAGATGTGTGAGGAGTCTAAAGCTCGCATAAAAATACTTGATGGCCCGCCTGGTGTACCAGAAAGAACAGTAATGATTTCAGCAAAGGATGAGCCAGATGCACCTATATCTCCAGCTATGGACGGGTTATTTAGAGTCTATAAACGAATAACTGATGGTTCAGATGGTGATTCTGGTCAACCTGAAAGAAATATTAGTAATGTAGGACCAACACGACTGCTAGTACCAGCTTCCCAAGCTGGCAGCCTTATTGGGAAACAGGGAGCAACCATTAAATCCATTCAAGATTCTTCAAAGTCCATTGTTCGTATTGTTGAGACTTTGCCTCTTGTTGCACTAAATGATGATAGAGTTGTGGAGATACAAGGTGAGCCTGTTGGTGTCCAGAAAGCACTGGAATCGATAGCCAGTCACTTAAGAAAATTTCTTGTTGACCGCAGTGTTCTTCCTCTTTTTGAAGGGCAAATGAAAATGCACAATGCACAGAGGGAACAAGCAATGGCAGCTCCTCAGCCTTGGGGCCCACCTCAACCTTGGGGCCCTCCTCCAAGCCACCTCCCTCCTGGTGGTCCAGGTTATGGTGGACATCCACAGTTCATGCCCCCAAGGCCGCAAGACAATTATTATCCTCCCCCTGATGTCCCCTCTATGGAAAAGCAGCCACACTACGGTATTTCTGCCTATGGACGAGAAGCACCAACTGGTGTTTCTGCTTCTGGGAATCAACCACCATCACATGTGGCTTCTCAGGTTACACACAACATGCAAATTCCTCTCTCCTATGCTGATGCTGTGATTGGAGCAGCTGGTGCTAGTATTAGCTATATTCGTAGGCACAGTGGTGCAACAGTAAC-TATTCAGGAAAG-CAGAGG-TGCACCTGGGGAGATGACAGTTGAGATAATTGGTAGTGCATCCCAAGTCCAAACTGCCCAGCAACTAGTCCAGAATTTCATGGCAGAAGCTCCTCAGGGCCCTCCTCCGCCAGCTTCTAACCCTCCGGCTCCAGCAGTTGATCTGAGCTACGGTTCATACCCACCACCATATGGCGCATCCTACGGATCGGCTGCTTCAGGAGCAGGGCCTGCACCTCACAATGGAGGCAGCTACGGTGGCACCACCTACCCAAGCTATGGATACTAAGTATCAGCAACGCTCAGCTTAGCTTT-GTGTCGGTTGATGAACAGTAGTACATTTTTGCTGCCGAATAATGACAATCCTGGATTCCTCAGCTGCGACTACCTTAAGCTCTTAGTTTACTTTTTCTACTCTTTTTGCCGTGTGTATGCCCAACCAGTTTACTTTTGGAATATGTTTATTCTCGTGGTCTGGATTAGTTATATAGTAATCCGATGCTGCCCTTTGTCGTCGGAAACAAGTGGTTGACTGTCTTTAAACTCGATTTTGGGGTGGAAAGTGCTGNNNTTTNCCAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK067707 [AGAAACAGAGAGATCTCCCGTCTCGTCGTCTCCTCCGCTCCTTCCGCCTCCCCAACACGAGTCGCGCCGCCGATCTCAGCAGGGGAGGGGAGGGGAGGGGATCCTGGTGAGCAAATATGGATGGACTGGTAGAGAATTTTGACGCAGATGATCTCGGCGAAATGCCTCAGAATCATTATAATGAAGAACAACTGATCCCCTACAGCGATGTGTCACATCCTTACAACGAAGAACCCGATAACATGGACAACGTAGAAGAGGGGAACCCATACATTCAGCAAGTGAGTTTGTACAGTGAAGAACCAGAGAATCAGTACAATGAGGAGCCATCAAACCCTTATCAGGAAGAGTCGGATAATGCATACAATGGGGAAGTGAAGCAACAGGATAGCTTGCCGGTAGAGGCTGATAAGAAATGGCCTGGTTGGCCAGGAGAGAGTGTTTTTCGTATACTGATCCCAGCCCAGAAGGTAGGTGCTATCATTGGCCGCAAAGGGGAGTTTATCAAAAAGATGTGTGAGGAGTCTAAAGCTCGCATAAAAATACTTGATGGCCCGCCTGGTGTACCAGAAAGAACAGTAATGATTTCAGCAAAGGATGAGCCAGATGCACCTATATCTCCAGCTATGGACGGGTTATTTAGAGTCTATAAACGAATAACTGATGGTTCAGATGGTGATTCTGGTCAACCTGAAAGAAATATTAGTAATGTAGGACCAACACGACTGCTAGTACCAGCTTCCCAAGCTGGCAGCCTTATTGGGAAACAGGGAGCAACCATTAAATCCATTCAAGATTCTTCAAAGTCCATTGTTCGTATTGTTGAGACTTTGCCTCTTGTTGCACTAAATGATGATAGAGTTGTGGAGATACAAGGTGAGCCTGTTGGTGTCCAGAAAGCACTGGAATCGATAGCCAGTCACTTAAGAAAATTTCTTGTTGACCGCAGTGTTCTTCCTCTTTTTGAAGGGCAAATGAAAATGCACAATGCACAGAGGGAACAAGCAATGGCAGCTCCTCAGCCTTGGGGCCCACCTCAACCTTGGGGCCCTCCTCCAAGCCACCTCCCTCCTGGTGGTCCAGGTTATGGTGGACATCCACAGTTCATGCCCCCAAGGCCGCAAGACAATTATTATCCTCCCCCTGATGTCCCCTCTATGGAAAAGCAGCCACACTACGGTATTTCTGCCTATGGACGAGAAGCACCAACTGGTGTTTCTGCTTCTGGGAATCAACCACCATCACATGTGGCTTCTCAGGTTACACACAACATGCAAATTCCTCTCTCCTATGCTGATGCTGTGATTGGAGCAGCTGGTGCTAGTATTAGCTATATTCGTAGGCACAGTGGTGCAACAGTAAC TATTCAGGAAAG CAGAGG TGCACCTGGGGAGATGACAGTTGAGATAATTGGTAGTGCATCCCAAGTCCAAACTGCCCAGCAACTAGTCCAGAATTTCATGGCAGAAGCTCCTCAGGGCCCTCCTCCGCCAGCTTCTAACCCTCCGGCTCCAGCAGTTGATCTGAGCTACGGTTCATACCCACCACCATATGGCGCATCCTACGGATCGGCTGCTTCAGGAGCAGGGCCTGCACCTCACAATGGAGGCAGCTACGGTGGCACCACCTACCCAAGCTATGGATACTAAGTATCAGCAACGCTCAGCTTAGCTTT GTGTCGGTTGATGAACAGTAGTACATTTTTGCTGCCGAATAATGACAATCCTGGATTCCTCAGCTGCGACTACCTTAAGCTCTTAGTTTACTTTTTCTACTCTTTTTGCCGTGTGTATGCCCAACCAGTTTACTTTTGGAATATGTTTATTCTCGTGATCTGGATTAGTTATATAGTAATCCGATGCTGCCCTTTGTCGTCGGAAACAAGTGGTTGACTGTCTTTAAACTCGATTTTGGGGTGGAAAGTGCT ] [+] EMBL AA753812 [ ACAGTTCATGCCCCCAAGGCCGCAAGACAATTATTATCCTCCCCCTGATGTCCCCTCTATGGAAAAGCAGCCACACTACGGTATTTCTGCCTATGGACGAGAAGCACCAACTGGTGTTTCTGCTTCTGGGAATCAACCACCATCACATGTGGTTTCTCAGGTTACACACAACATGCAAATTCCTCTATCCTATGCTGATGCTGTGATTGGAGCAGCTGGTGCTAGTATTAGCNATATTCGTAGGCACAGTG ] [+] EMBL AU030947 [ TTGGA CAACTGGTGCTAGTATTAGCTATATTCNTAGGCACAGTGGTGCAACNGTAAC TTTTCAGGAAAG CAGAGG TGCACCTGGGNAGATGACAGTTGAGATAATTGGTAGTGCATCCCAAGTCCAAACTGCCCAGCAACTAGTCCAGAATTTCATGGCAGAAGCTCCTCAGGGCCCTCCTCCGCCAGCTTCTAACCCTCCGGCTCCAGCAGTTGATCTGAGCTACGGTTCATACCCACCACCATATGGCGCATCCTACGGATCGGCTGCTTCAGGAGCAGGGCCTGCNCCTCACAATGGAGGCAGCTACGGTGGCACCACCTACCCAAGCTATGGATACTAAGTATCAGCAACGCTCAGCTTAGCTTT GTGTCGGTTGATGAACAGTAGTACATTTTTGCTGCCGAATAATGACAATCCTGGATTCCTCAGCTGCGACTACCTTAAGCTCTTAGTTTACTTTTTCTACTCTTTTTGCCGTGTGTATGCCCAACCAGTTTACTTTTGGAATATGTTTATTCTCGTGGTCTGGATTAGTTATATAGTAATCCGATGCTGCCCTTTGTCGTCGGAAACAAGTGGTTGACTGTCTTTAAACTCGATTTTGGNGTGGNAAGTGCNGNNNTTTNCCAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BI797441 [ CTATATTCGTAGGCACAGTGGTGCAACAGTAACGTATTCAGGAAAGTCAGAGGTTGCACCTGGGGAGATGACAGTTGAGATAATT GTAGTGCATCCCAAGTCCAAACTGCCCAGCAACTAGTCCAGAATTTCATGGCAGAAGCTCCTCAGGGCCCTCCTCCGCCAGCTTCTAACCCTCCGGCTCCAGCAGTTGATCCGAGCTACGGTTCATACCCACCACCATATGGCGCATCCTATGGATC GCTGCTTCAGGAGCAGGGCCTGCACCTCACAATGGA GCAGCTACGGTGGCACCACCTACCCAAGCTATGGATACTAAGTATCAGCAACGCTCAGCTTAGCTTTCGTGTCGGTTGATGAACAGTAGCACATTTTTGCTGCCGAATAATGACAATCCTGGATTCCTCAGCTGCGACTACCTTAAGCTCTTAGTATACTTTTTCTACTCTTTTTGCCGTGTGTATGCCCAACCAGTTTACTTTTGGAATATGTTTATTCTCGTGGTCTGGATTAGT TATAGTAAaaa ] [+] EMBL AU173031 [ ACGGATCGGNTGCTTCAGGAGCAGGGCCTGCCCCTCNCAATGGAGGCAGNTACGGTGGCCCCCCCTACCCAAGCTATGGATATTAAGTATCAGCAACGCTCAGCTTAGCTTT GTGTCGGTTGATGAACAGTAGTACATTTTTGCTGCCGAATAATGACAATCCTGGATTCCTCAGCTGNGACTNCCTTAAGCTNTTAGTTTACTTTTTNTACTCTTTTTGCCGNGNGTATGCCCAACCAGTTTACTTTTGGAATATGTTTATTTTCGTGGTCTGGATTAGTTATATAGTAATCCGATGCTGCCCTTTGTNGTCGGAAACAAGTGGTTGACTGTCTTTAAACTCGATTTTGGGGTGGAAAGTGCTGAAATTTNCCNAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_10242#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 459 fasta sequence [AAATGCACAATGCACAGAGGGAACAAGCAATGGCAGCTCCTCAGCCTTGGGGCCCACCTCAACCTTGGGGCCCTCCTCCAAGCCACCTCCCTCCTGGTGGTCCAGGTTATGGTGGACATCCACAGTTCATGCCCCCAAGGCCGCAAGACAATTATTATCCTCCCCCTGATGTCCCCTCTATGGAAAAGCAGCCACACTACGGTATTTCTGCCTATGGACGAGAAGCACCAACTGGTGTTTCTGCTTCTGGGAATCAACCACCATCACATGTGGGCTTCTCANGTCAGTTTTTTGTTGCACNTTTGAGCTAAACACGATAGTACTTTTATCTTTAAAATGCTAATTCANGAGGCAGCTACTGATATGTGCATCCGTCAAAAGGTTACACACAACATGCAAATTCCTCTCTCCTATGCTGATGCTGTGATTGGAGCAGCTGGTGCTANTATTAGCTANATT] [+] EMBL AU030948 [AAATGCACAATGCACAGAGGGAACAAGCAATGGCAGCTCCTCAGCCTTGGGGCCCACCTCAACCTTGGGGCCCTCCTCCAAGCCACCTCCCTCCTGGTGGTCCAGGTTATGGTGGACATCCACAGTTCATGCCCCCAAGGCCGCAAGACAATTATTATCCTCCCCCTGATGTCCCCTCTATGGAAAAGCAGCCACACTACGGTATTTCTGCCTATGGACGAGAAGCACCAACTGGTGTTTCTGCTTCTGGGAATCAACCACCATCACATGTGGGCTTCTCANGTCAGTTTTTTGTTGCACNTTTGA ] [+] EMBL C74920 [ AATGCACAATGCACAGAGGGAACAAGCAATGGCAGCTCCTCAGCCTTGGGGCCCACCTCAACCTTGGGGCCCTCCTCCAAGCCACCTCCCTCCTGGTGGTCCAGGTTATGGTGGACATCCACAGTTCATNCCCCCAAGGCCGCAAGACAATTATTATCCTCCCCCTGATGTCCCCTCTATGGAAAAGCAGCCACACTACGGTATTTCTGCCTATGGACGAGAAGCACCAACTGGTGTTTCTGCTTCTGGGAATCAACCACCATCACATGT GGCTTCTCAGGTCAG TTTTTGTTGCAC TTTGAGCTAAACACGATAGTACTTTTATCTTTAAAATGCTAATTCANGAGGCAGCTACTGATATGTGCATCCGTCAAAAGGTTACACACAACATGCAAATTCCTCTCTCCTATGCTGATGCTGTGATTGGAGCAGCTGGTGCTANTATTAGCTANATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10242#0 AGAAACAGAGAGATCTCCCGTCTCGTCGTCTCCTCCGCTCCTTCCGCCTCCCCAACACGA 60 consensus_10242#1 ------------------------------------------------------------ consensus_10242#0 GTCGCGCCGCCGATCTCAGCAGGGGAGGGGAGGGGAGGGGATCCTGGTGAGCAAATATGG 120 consensus_10242#1 ------------------------------------------------------------ consensus_10242#0 ATGGACTGGTAGAGAATTTTGACGCAGATGATCTCGGCGAAATGCCTCAGAATCATTATA 180 consensus_10242#1 ------------------------------------------------------------ consensus_10242#0 ATGAAGAACAACTGATCCCCTACAGCGATGTGTCACATCCTTACAACGAAGAACCCGATA 240 consensus_10242#1 ------------------------------------------------------------ consensus_10242#0 ACATGGACAACGTAGAAGAGGGGAACCCATACATTCAGCAAGTGAGTTTGTACAGTGAAG 300 consensus_10242#1 ------------------------------------------------------------ consensus_10242#0 AACCAGAGAATCAGTACAATGAGGAGCCATCAAACCCTTATCAGGAAGAGTCGGATAATG 360 consensus_10242#1 ------------------------------------------------------------ consensus_10242#0 CATACAATGGGGAAGTGAAGCAACAGGATAGCTTGCCGGTAGAGGCTGATAAGAAATGGC 420 consensus_10242#1 ------------------------------------------------------------ consensus_10242#0 CTGGTTGGCCAGGAGAGAGTGTTTTTCGTATACTGATCCCAGCCCAGAAGGTAGGTGCTA 480 consensus_10242#1 ------------------------------------------------------------ consensus_10242#0 TCATTGGCCGCAAAGGGGAGTTTATCAAAAAGATGTGTGAGGAGTCTAAAGCTCGCATAA 540 consensus_10242#1 ------------------------------------------------------------ consensus_10242#0 AAATACTTGATGGCCCGCCTGGTGTACCAGAAAGAACAGTAATGATTTCAGCAAAGGATG 600 consensus_10242#1 ------------------------------------------------------------ consensus_10242#0 AGCCAGATGCACCTATATCTCCAGCTATGGACGGGTTATTTAGAGTCTATAAACGAATAA 660 consensus_10242#1 ------------------------------------------------------------ consensus_10242#0 CTGATGGTTCAGATGGTGATTCTGGTCAACCTGAAAGAAATATTAGTAATGTAGGACCAA 720 consensus_10242#1 ------------------------------------------------------------ consensus_10242#0 CACGACTGCTAGTACCAGCTTCCCAAGCTGGCAGCCTTATTGGGAAACAGGGAGCAACCA 780 consensus_10242#1 ------------------------------------------------------------ consensus_10242#0 TTAAATCCATTCAAGATTCTTCAAAGTCCATTGTTCGTATTGTTGAGACTTTGCCTCTTG 840 consensus_10242#1 ------------------------------------------------------------ consensus_10242#0 TTGCACTAAATGATGATAGAGTTGTGGAGATACAAGGTGAGCCTGTTGGTGTCCAGAAAG 900 consensus_10242#1 ------------------------------------------------------------ consensus_10242#0 CACTGGAATCGATAGCCAGTCACTTAAGAAAATTTCTTGTTGACCGCAGTGTTCTTCCTC 960 consensus_10242#1 ------------------------------------------------------------ consensus_10242#0 TTTTTGAAGGGCAAATGAAAATGCACAATGCACAGAGGGAACAAGCAATGGCAGCTCCTC 1020 consensus_10242#1 ------------------AAATGCACAATGCACAGAGGGAACAAGCAATGGCAGCTCCTC 42 ****************************************** consensus_10242#0 AGCCTTGGGGCCCACCTCAACCTTGGGGCCCTCCTCCAAGCCACCTCCCTCCTGGTGGTC 1080 consensus_10242#1 AGCCTTGGGGCCCACCTCAACCTTGGGGCCCTCCTCCAAGCCACCTCCCTCCTGGTGGTC 102 ************************************************************ consensus_10242#0 CAGGTTATGGTGGACATCCACAGTTCATGCCCCCAAGGCCGCAAGACAATTATTATCCTC 1140 consensus_10242#1 CAGGTTATGGTGGACATCCACAGTTCATGCCCCCAAGGCCGCAAGACAATTATTATCCTC 162 ************************************************************ consensus_10242#0 CCCCTGATGTCCCCTCTATGGAAAAGCAGCCACACTACGGTATTTCTGCCTATGGACGAG 1200 consensus_10242#1 CCCCTGATGTCCCCTCTATGGAAAAGCAGCCACACTACGGTATTTCTGCCTATGGACGAG 222 ************************************************************ consensus_10242#0 AAGCACCAACTGGTGTTTCTGCTTCTGGGAATCAACCACCATCACATGTGG-CTTCTCAG 1259 consensus_10242#1 AAGCACCAACTGGTGTTTCTGCTTCTGGGAATCAACCACCATCACATGTGGGCTTCTCAN 282 *************************************************** ******* consensus_10242#0 GTTACACACAACATGCAAATTCCTCTCTCCTATGCTGATGCTGTGAT--TGGAGCAGCTG 1317 consensus_10242#1 GTCAGTTTTTTGTTGCACNTTTGAGCTAAACACGATAGTACTTTTATCTTTAAAATGCTA 342 ** * **** ** * * * * ** * ** * * *** consensus_10242#0 GTGCTAGTATTAGCTATATTCGTAGGCACAGTGGTGCAACAGTAACTATTCAGGAAAGCA 1377 consensus_10242#1 ATTCANGAGGCAGCTA--CTGATATGTGCATCCGTCAAAAGGTTAC-ACACAACAT-GCA 398 * * * ***** * ** * ** ** ** ** ** * ** * *** consensus_10242#0 GAGGTGCACCTGGGGAGATGACAGTTGAGAT---AATTGGTAGTGCATCCCAAGTCCAAA 1434 consensus_10242#1 AATTCCTCTCTCCTATGCTGAT-GCTGTGATTGGAGCAGCTGGTGCTANTATTAGCTANA 457 * ** * *** * ** *** * * * **** * * * consensus_10242#0 CTGCCCAGCAACTAGTCCAGAATTTCATGGCAGAAGCTCCTCAGGGCCCTCCTCCGCCAG 1494 consensus_10242#1 TT---------------------------------------------------------- 459 * consensus_10242#0 CTTCTAACCCTCCGGCTCCAGCAGTTGATCTGAGCTACGGTTCATACCCACCACCATATG 1554 consensus_10242#1 ------------------------------------------------------------ consensus_10242#0 GCGCATCCTACGGATCGGCTGCTTCAGGAGCAGGGCCTGCACCTCACAATGGAGGCAGCT 1614 consensus_10242#1 ------------------------------------------------------------ consensus_10242#0 ACGGTGGCACCACCTACCCAAGCTATGGATACTAAGTATCAGCAACGCTCAGCTTAGCTT 1674 consensus_10242#1 ------------------------------------------------------------ consensus_10242#0 TGTGTCGGTTGATGAACAGTAGTACATTTTTGCTGCCGAATAATGACAATCCTGGATTCC 1734 consensus_10242#1 ------------------------------------------------------------ consensus_10242#0 TCAGCTGCGACTACCTTAAGCTCTTAGTTTACTTTTTCTACTCTTTTTGCCGTGTGTATG 1794 consensus_10242#1 ------------------------------------------------------------ consensus_10242#0 CCCAACCAGTTTACTTTTGGAATATGTTTATTCTCGTGGTCTGGATTAGTTATATAGTAA 1854 consensus_10242#1 ------------------------------------------------------------ consensus_10242#0 TCCGATGCTGCCCTTTGTCGTCGGAAACAAGTGGTTGACTGTCTTTAAACTCGATTTTGG 1914 consensus_10242#1 ------------------------------------------------------------ consensus_10242#0 GGTGGAAAGTGCTGNNNTTTNCCAAAAAAAAAAAAAAAAAAAAAAAA 1961 consensus_10242#1 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||