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Oryza sativa
cluster # 10244 cluster # 10244       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10244#0 length = 1960 sequences # 4  
consensus_10244#1 length = 1291 sequences # 1  
consensus_10244#2 length = 602 sequences # 2  

consensusID : consensus_10244#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1960
fasta sequence
                              [TCACCTTCTCCGCCCTCCCCCCTCCGCCGCCTCCGCCGCTCCCCCACCTTCCAGAACCTTCCTTTCCCGAAATAGCCACCCCTACCCTACCCTACCCTACCCACCCCCGCCAAGATCCCCGCCGCCGGCGAGCTCGAGCCCTTGGTGGTGCTCCGGCGGGCGTTGTCGCGGTCGGATCAGCTGCTGCTGGTGCTGGTGATGCCGCTCTCTCTTTCTTGCGTGTACTTCCGGGTGGGAGGTTGATGGCGATGGTGAGGTGTTCTTTGGCGCGGTTGCCCTCGCCCCCACTCTTATCTCCTCTCCTCGCCCATGCTACCTACCTTCCTCCCCCGCCGGAGCTGCTCTGCTGCTCGTACTAGCGTGGGAGCTGCCTCTTCTTGTTGAGCCATTTCTTGCCTACAAGGACAGGGTGCCTCGCCGTCGCCATTGCCGGCGTCGGAGCCGGACAAGGAGGTTCAGTGTACTGTACCGTGGTTTTGGGCCTTCTGAGCTATGGATGATCCAATGCTGAATGCGGTGAAGGAGGAGGAGAGCCACGGGGACGGAGGAGGGTTGGAGGTGGTGGCGGGAGAGGATGGGGCGGCGGCGGTGGCGGCGGGGGTGGCGCCGAGGCCGATGGAGGGGCTGCACGACGCCGGGCCGCCGCCGTTCCTGACCAAGACGTACGACATGGTGGACGACGCCGGCACCGACGCCGCCGTGTCGTGGAGCGCGACGAGCAACAGCTTCGTGGTGTGGGATCCCCACGCCTTCGCCACCGTCTTGCTCCCCAGGTTCTTCAAGCACAACAACTTCTCCAGCTTCGTCAGGCAGCTCAACACCTATGGTTTCAGAAAGGTGGATCCTGATCGGTGGGAATTTGCAAATGAGAATTTTCTGCGGGGACAGAGACATCTTCTCAAGAACATCAAGCGTAGAAAACCACCTTCCCATACTGCTTCAAACCAGCAATCCCTTGGGCCATACCTTGAGGTGGGCCACTTTGGATATGATGCTGAGATAGACCGGCTGAAGAGAGACAAGCAATTATTGATGGCTGAGGTGGTGAAGCTAAGGCAGGAGCAGCAGAATACAAAGGCAAATCTGAAAGCCATGGAGGATAGGCTGCAAGGAACCGAGCAGAGGCAACAGCAGATGATGGCATTCTTGGCGCGTGTCATGAAAAATCCTGAGTTCTTAAAACAACTTATGTCCCAGAATGAGATGAGAAAGGAGCTCCAAGATGCCATTTCAAAGAAAAGAAGGCGTCGCATAGATCAGGGACCTGAAGTTGACGACGTCGGCACTAGCAGTAGCATAGAGCAAGAGTCACCGGCCTTGTTTGATCCCCAGGAGTCGGTGGAATTCCTCATCGATGGGATTCCCTCCGATCTTGAAAACTCAGCTATGGATGCTGGAGGTCTGGTGGAGCCACAGGATTTCGATGTCGGCGCCTCCGAACAGCAGCAGATCGGGCCCCAGGGGGAGTTGAACGACAATTTCTGGGAGGAGCTGCTGAACGAAGGGCTTGTTGGTGAGGAGAACGACAACCCGGTCGTCGAGGACGACATGAATGTGTTGTCGGAGAAGATGGGTTACCTCAACTCAAATGGCCCAACGGCTGGGGAATAGCTAATTTCATTCAAATTATACCACATTGCTGTCAGCTTTCGCCATGTGAATTTAACTGAATTTTAGTTGAATTTCTGCTTGCTACTGGCATGCCTCCCTCCCTGTGTTACTGACCGTAGTGATTTGTTCGTTGTTAGGCCATATAGCCTGCCAGTCATGTAAAATGAGTAAAGGTGTTGATGATCCACAAATGTTCTGTTCCGTGTTGTCAGATGGTCTGCCTGTATTTGTAGTCGTGCTTAGTGTGTGCAATGTTGTAATGATATCTAATATTAATCTGTACTTCTCGTAATGACATCTGATCTTAATCTGATTGCAGAAGTGCTTTGAATTGCAAAAAAACAAAAAA]

[+] EMBL AK101824             [TCACCTTCTCCGCCCTCCCCCCTCCGCCGCCTCCGCCGCTCCCCCACCTTCCAGAACCTTCCTTTCCCGAAATAGCCACCCCTACCCTACCCTACCCTACCCACCCCCGCCAAGATCCCCGCCGCCGGCGAGCTCGAGCCCTTGGTGGTGCTCCGGCGGGCGTTGTCGCGGTCGGATCAGCTGCTGCTGGTGCTGGTGATGCCGCTCTCTCTTTCTTGCGTGTACTTCCGGGTGGGAGGTTGATGGCGATGGTGAGGTGTTCTTTGGCGCGGTTGCCCTCGCCCCCACTCTTATCTCCTCTCCTCGCCCATGCTACCTACCTTCCTCCCCCGCCGGAGCTGCTCTGCTGCTCGTACTAGCGTGGGAGCTGCCTCTTCTTGTTGAGCCATTTCTTGCCTACAAGGACAGGGTGCCTCGCCGTCGCCATTGCCGGCGTCGGAGCCGGACAAGGAGGTTCAGTGTACTGTACCGTGGTTTTGGGCCTTCTGAGCTATGGATGATCCAATGCTGAATGCGGTGAAGGAGGAGGAGAGCCACGGGGACGGAGGAGGGTTGGAGGTGGTGGCGGGAGAGGATGGGGCGGCGGCGGTGGCGGCGGGGGTGGCGCCGAGGCCGATGGAGGGGCTGCACGACGCCGGGCCGCCGCCGTTCCTGACCAAGACGTACGACATGGTGGACGACGCCGGCACCGACGCCGCCGTGTCGTGGAGCGCGACGAGCAACAGCTTCGTGGTGTGGGATCCCCACGCCTTCGCCACCGTCTTGCTCCCCAGGTTCTTCAAGCACAACAACTTCTCCAGCTTCGTCAGGCAGCTCAACACCTATGGTTTCAGAAAGGTGGATCCTGATCGGTGGGAATTTGCAAATGAGAATTTTCTGCGGGGACAGAGACATCTTCTCAAGAACATCAAGCGTAGAAAACCACCTTCCCATACTGCTTCAAACCAGCAATCCCTTGGGCCATACCTTGAGGTGGGCCACTTTGGATATGATGCTGAGATAGACCGGCTGAAGAGAGACAAGCAATTATTGATGGCTGAGGTGGTGAAGCTAAGGCAGGAGCAGCAGAATACAAAGGCAAATCTGAAAGCCATGGAGGATAGGCTGCAAGGAACCGAGCAGAGGCAACAGCAGATGATGGCATTCTTGGCGCGTGTCATGAAAAATCCTGAGTTCTTAAAACAACTTATGTCCCAGAATGAGATGAGAAAGGAGCTCCAAGATGCCATTTCAAAGAAAAGAAGGCGTCGCATAGATCAGGGACCTGAAGTTGACGACGTCGGCACTAGCAGTAGCATAGAGCAAGAGTCACCGGCCTTGTTTGATCCCCAGGAGTCGGTGGAATTCCTCATCGATGGGATTCCCTCCGATCTTGAAAACTCAGCTATGGATGCTGGAGGTCTGGTGGAGCCACAGGATTTCGGTGTCGGCGCCTCCGAACAGCAGCAGATCGGGCCCCAGGGGGAGTTGAACGACAATTTCTGGGAGGAGCTGCTGAACGAAGGGCTTGTTGGTGAGGAGAACGACAACCCGGTCGTCGAGGACGACATGAATGTGTTGTCGGAGAAGATGGGTTACCTCAACTCAAATGGCCCAACGGCTGGGGAATAGCTAATTTCATTCAAATTATACCACATTGCTGTCAGCTTTCGCCATGTGAATTTAACTGAATTTTAGTTGAATTTCTGCTTGCTACTGGCATGCCTCCCTCCCTGTGTTACTGACCGTAGTGATTTGTTCGTTGTTAGGCCATATAGCCTGCCAGTCATGTAAAATGAGTAAAGGTGTTGATGATCCACAAATGTTCTGTTCCGTGTTGTCAGATGGTCTGCCTGTATTTGTAGTCGTGCTTAGTGTGTGCAATGTTGTAATGATATCTAATATTAATCTGTACTTCTCGTAATGACATCTGATCTTAATCTGATTGCAGAAGTGC                        ]
[+] EMBL AY344487             [                                                                                                                                                                                                                                                                                                                                                                                                                                        CATTGCCGGCGTCGGAGCCGGACAAGGAGGTTCAGTGTACTGTACCGTGGTTTTGGGCCTTCTGAGCTATGGATGATCCAATGCTGAATGCGGTGAAGGAGGAGGAGAGCCACGGGGACGGAGGAGGGTTGGAGGTGGTGGCGGGAGAGGATGGGGCGGCGGCGGTGGCGGCGGGGGTGGCGCCGAGGCCGATGGAGGGGCTGCACGACGCCGGGCCGCCGCCGTTCCTGACCAAGACGTACGACATGGTGGACGACGCCGGCACCGACGCCGCCGTGTCGTGGAGCGCGACGAGCAACAGCTTCGTGGTGTGGGATCCCCACGCCTTCGCCACCGTCTTGCTCCCCAGGTTCTTCAAGCACAACAACTTCTCCAGCTTCGTCAGGCAGCTCAACACCTATGGTTTCAGAAAGGTGGATCCTGATCGGTGGGAATTTGCAAATGAGAATTTTCTGCGGGGACAGAGACATCTTCTCAAGAACATCAAGCGTAGAAAACCACCTTCCCATACTGCTTCAAACCAGCAATCCCTTGGGCCATACCTTGAGGTGGGCCACTTTGGATATGATGCTGAGATAGACCGGCTGAAGAGAGACAAGCAATTATTGATGGCTGAGGTGGTGAAGCTAAGGCAGGAGCAGCAGAATACAAAGGCAAATCTGAAAGCCATGGAGGATAGGCTGCAAGGAACCGAGCAGAGGCAACAGCAGATGATGGCATTCTTGGCGCGTGTCATGAAAAATCCTGAGTTCTTAAAACAACTTATGTCCCAGAATGAGATGAGAAAGGAGCTCCAAGATGCCATTTCAAAGAAAAGAAGGCGTCGCATAGATCAGGGACCTGAAGTTGACGACGTCGGCACTAGCAGTAGCATAGAGCAAGAGTCACCGGCCTTGTTTGATCCCCAGGAGTCGGTGGAATTCCTCATCGATGGGATTCCCTCCGATCTTGAAAACTCAGCTATGGATGCTGGAGGTCTGGTGGAGCCACAGGATTTCGATGTCGGCGCCTCCGAACAGCAGCAGATCGGGCCCCAGGGGGAGTTGAACGACAATTTCTGGGAGGAGCTGCTGAACGAAGGGCTTGTTGGTGAGGAGAACGACAACCCGGTCGTCGAGGACGACATGAATGTGTTGTCGGAGAAGATGGGTTACCTCAACTCAAATGGCCCAACGGCTGGGGAATAGCTAATTTCATTCAAATTATACCACATTGCTGTCAGCTTTCGCCATGTGAATTTAACTGAATT                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU091457             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GGCGGCGGTGGCGGCGGGGGTGGCGCCGAGGCCGATGGAGGGGCTGCACGACGCCGGGCCGCCGCCGTTCCTGACCAAGACGTACGACATGGTGGACGACGCCGGCACCGACNCCGCCGTGTCGTGGAGCGCGACGAGCAACAGCTTCGTGGTGTGGGATCCCCACGCCTTCGCCACCGTCTTNCTCCCCAGGTTCTTCAAGCACAACAACTTCTCCAGCTTCGTCAGGCAGCTCAACACCTATNGTTTCAGAAAGGTGGATCCTGATCGGTGGGAATTTGCAAATGAGAATTTTCTNCGGGGACAGAGACATCTTCTCAAGAACATCAANCGTAGAAAACCACCTTCCCATACTGCTTCNAACCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU030887             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TTCCCTCCGATCTTGAAAACTCANCTATTGATGCTGGAGGTCTGGTGGAGCCACAGGATTTCGATGTCGGCGCCTCCGAACAGCNGCAGATCGGNCCCCAGGGGGNGTTGAACGACAATTTCTGGGNGGAGCTGCTGAACGAAGGGCTTGTTGGTGAGGAGAACGACAACCCGGTCGTCGAGGACGACATGAATGTGTTGTCGGAGAAGATGGGTTACCTCAACTCAAATGGCCCAACGGCTGGGGAATAGCTAATTTCATTCAAATTATACCACATTGCTGTCAGCTTTCGCCATGTGAATTTAACTGAATTTTAGTTGAATTTCTGCTTGCTACTGGCATGCCTCCCTTCCTGTGTTACTGACCGTAGTGATTTGTTCGTTGTTAGGCCATATAGCCTGCCAGTCATGTAAAATGAGTAAAGGTGTTGATGATCCACAAATGTTCTGTTCCGTGTTGTCAGATGGTCTGCCTGTATTTGTAGTCGTGCTTAGTGTGTGCAATGTTGTAATGATATCTAATATTAATCTGTACTTCTCGTAATGACATCTGATCTTAATCTGATTGCAGAAGTGCTTTGAATTGCAAAAAAACAAAAAA]


>consensus_10244#0 TCACCTTCTCCGCCCTCCCCCCTCCGCCGCCTCCGCCGCTCCCCCACCTTCCAGAACCTT CCTTTCCCGAAATAGCCACCCCTACCCTACCCTACCCTACCCACCCCCGCCAAGATCCCC GCCGCCGGCGAGCTCGAGCCCTTGGTGGTGCTCCGGCGGGCGTTGTCGCGGTCGGATCAG CTGCTGCTGGTGCTGGTGATGCCGCTCTCTCTTTCTTGCGTGTACTTCCGGGTGGGAGGT TGATGGCGATGGTGAGGTGTTCTTTGGCGCGGTTGCCCTCGCCCCCACTCTTATCTCCTC TCCTCGCCCATGCTACCTACCTTCCTCCCCCGCCGGAGCTGCTCTGCTGCTCGTACTAGC GTGGGAGCTGCCTCTTCTTGTTGAGCCATTTCTTGCCTACAAGGACAGGGTGCCTCGCCG TCGCCATTGCCGGCGTCGGAGCCGGACAAGGAGGTTCAGTGTACTGTACCGTGGTTTTGG GCCTTCTGAGCTATGGATGATCCAATGCTGAATGCGGTGAAGGAGGAGGAGAGCCACGGG GACGGAGGAGGGTTGGAGGTGGTGGCGGGAGAGGATGGGGCGGCGGCGGTGGCGGCGGGG GTGGCGCCGAGGCCGATGGAGGGGCTGCACGACGCCGGGCCGCCGCCGTTCCTGACCAAG ACGTACGACATGGTGGACGACGCCGGCACCGACGCCGCCGTGTCGTGGAGCGCGACGAGC AACAGCTTCGTGGTGTGGGATCCCCACGCCTTCGCCACCGTCTTGCTCCCCAGGTTCTTC AAGCACAACAACTTCTCCAGCTTCGTCAGGCAGCTCAACACCTATGGTTTCAGAAAGGTG GATCCTGATCGGTGGGAATTTGCAAATGAGAATTTTCTGCGGGGACAGAGACATCTTCTC AAGAACATCAAGCGTAGAAAACCACCTTCCCATACTGCTTCAAACCAGCAATCCCTTGGG CCATACCTTGAGGTGGGCCACTTTGGATATGATGCTGAGATAGACCGGCTGAAGAGAGAC AAGCAATTATTGATGGCTGAGGTGGTGAAGCTAAGGCAGGAGCAGCAGAATACAAAGGCA AATCTGAAAGCCATGGAGGATAGGCTGCAAGGAACCGAGCAGAGGCAACAGCAGATGATG GCATTCTTGGCGCGTGTCATGAAAAATCCTGAGTTCTTAAAACAACTTATGTCCCAGAAT GAGATGAGAAAGGAGCTCCAAGATGCCATTTCAAAGAAAAGAAGGCGTCGCATAGATCAG GGACCTGAAGTTGACGACGTCGGCACTAGCAGTAGCATAGAGCAAGAGTCACCGGCCTTG TTTGATCCCCAGGAGTCGGTGGAATTCCTCATCGATGGGATTCCCTCCGATCTTGAAAAC TCAGCTATGGATGCTGGAGGTCTGGTGGAGCCACAGGATTTCGATGTCGGCGCCTCCGAA CAGCAGCAGATCGGGCCCCAGGGGGAGTTGAACGACAATTTCTGGGAGGAGCTGCTGAAC GAAGGGCTTGTTGGTGAGGAGAACGACAACCCGGTCGTCGAGGACGACATGAATGTGTTG TCGGAGAAGATGGGTTACCTCAACTCAAATGGCCCAACGGCTGGGGAATAGCTAATTTCA TTCAAATTATACCACATTGCTGTCAGCTTTCGCCATGTGAATTTAACTGAATTTTAGTTG AATTTCTGCTTGCTACTGGCATGCCTCCCTCCCTGTGTTACTGACCGTAGTGATTTGTTC GTTGTTAGGCCATATAGCCTGCCAGTCATGTAAAATGAGTAAAGGTGTTGATGATCCACA AATGTTCTGTTCCGTGTTGTCAGATGGTCTGCCTGTATTTGTAGTCGTGCTTAGTGTGTG CAATGTTGTAATGATATCTAATATTAATCTGTACTTCTCGTAATGACATCTGATCTTAAT CTGATTGCAGAAGTGCTTTGAATTGCAAAAAAACAAAAAA



consensusID : consensus_10244#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1291
fasta sequence
                              [CCGTCGCCATTGCCGGCGTCGGAGCCGGACAAGGAGGTTCAGTGTACTGTACCGTGGTTTTGGGCCTTCTGAGCTATGGATGATCCAATGCATGGATGATCCAATGCTGAATGCGGTGAAGGAGGAGGAGAGCCACGGGGACGGAGGAGGGTTGGAGGTGGTGGCGGGAGAGGATGGGGCGGCGGCGGTGGCGGCGGGGTTGGCGCCGGGGCCGATGGAGGGGCTGCACGACGCCGGGCCGCCGCCGTTCCTGACCAAGACGTACGACATGGTGGACGACGCCGGCACCGACGCCGCCGTGTCGTGGAGCGCGACGAGCAACAGCTTCGTGGTGTGGGATCCCCACGCCTTCGCCACCGTCTTGCTCCCCAGGTTCTTCAAGCACAACAACTTCTCCAGCTTCGTCAGGCAGCTCAACACCTATGGTTTCAGAAAGGTGGATCCTGATCGGTGGGAATTTGCAAATGAGAATTTCCTGCGGGGACAGAGACATCTTTTCAAGAACATCAAGCGTAGAAAACCACCTTCCCATACTGCTTCAAACCAGCAATCCTTTGGGCCATACCTTGAGGTGGGCCACTTTGGATATGATGCTGAGATAGACCGGCTGAAGAGAGACAAGCAATTATTGATGGCTGAGGTGGTGAAGCTAAGGCAGGAGCAGCAGAATACAAAGGCAAATCTGAAAGCCATGGAGGATAGGCTGCAAGGAACCGAGCAGAGGCAAAAGCAGATGATCGCATTCTTGGCGCGTGTCATGAAAAATCCTGAGTTCTTAAAACAACTTATGTCCCAGAATGAGATGAGAAAGGAGCTCCAAGATGCCATTTCAAAGAAAAGAAGGCGTCGCATAGATCAGGGACCTGAAGTTGACGACGTCGGCACTAGCAGTAGCATAGAGCAAGAGTCACCGGCCTTGTTTGATCCCCAGGAGTCGGTGGAATTCCTCATCGATGGGATTCCCTCCGATCTTGAAAACTCAGCTATGGATGCTGGAGGTCTGGTGGAGCCACAGGATTTCGATGTCGGCGCCTCCCAACAGCAGCAGATCGGGCCCCAGGGGGAGTTGAACGACAATTTCTGGGAGGAGCTGCTGAACGAAGGGCTTGTTGGTGAGGAGAACGACAACCCGGTCGTCGAGGACGACATGAATGTGTTGTCGGAGAAGATGGGTTACCTCAACTCAAATGGCCCAACGGCTGGGGAATAGGGGAATAGCTAATTTCATTCAAATTATACCACATTGCTGTCAGCTTTCGCCATGTGAATTTAACTGAATTTTAGTTGAATA]

[+] EMBL AY323488             [CCGTCGCCATTGCCGGCGTCGGAGCCGGACAAGGAGGTTCAGTGTACTGTACCGTGGTTTTGGGCCTTCTGAGCTATGGATGATCCAATGCATGGATGATCCAATGCTGAATGCGGTGAAGGAGGAGGAGAGCCACGGGGACGGAGGAGGGTTGGAGGTGGTGGCGGGAGAGGATGGGGCGGCGGCGGTGGCGGCGGGGTTGGCGCCGGGGCCGATGGAGGGGCTGCACGACGCCGGGCCGCCGCCGTTCCTGACCAAGACGTACGACATGGTGGACGACGCCGGCACCGACGCCGCCGTGTCGTGGAGCGCGACGAGCAACAGCTTCGTGGTGTGGGATCCCCACGCCTTCGCCACCGTCTTGCTCCCCAGGTTCTTCAAGCACAACAACTTCTCCAGCTTCGTCAGGCAGCTCAACACCTATGGTTTCAGAAAGGTGGATCCTGATCGGTGGGAATTTGCAAATGAGAATTTCCTGCGGGGACAGAGACATCTTTTCAAGAACATCAAGCGTAGAAAACCACCTTCCCATACTGCTTCAAACCAGCAATCCTTTGGGCCATACCTTGAGGTGGGCCACTTTGGATATGATGCTGAGATAGACCGGCTGAAGAGAGACAAGCAATTATTGATGGCTGAGGTGGTGAAGCTAAGGCAGGAGCAGCAGAATACAAAGGCAAATCTGAAAGCCATGGAGGATAGGCTGCAAGGAACCGAGCAGAGGCAAAAGCAGATGATCGCATTCTTGGCGCGTGTCATGAAAAATCCTGAGTTCTTAAAACAACTTATGTCCCAGAATGAGATGAGAAAGGAGCTCCAAGATGCCATTTCAAAGAAAAGAAGGCGTCGCATAGATCAGGGACCTGAAGTTGACGACGTCGGCACTAGCAGTAGCATAGAGCAAGAGTCACCGGCCTTGTTTGATCCCCAGGAGTCGGTGGAATTCCTCATCGATGGGATTCCCTCCGATCTTGAAAACTCAGCTATGGATGCTGGAGGTCTGGTGGAGCCACAGGATTTCGATGTCGGCGCCTCCCAACAGCAGCAGATCGGGCCCCAGGGGGAGTTGAACGACAATTTCTGGGAGGAGCTGCTGAACGAAGGGCTTGTTGGTGAGGAGAACGACAACCCGGTCGTCGAGGACGACATGAATGTGTTGTCGGAGAAGATGGGTTACCTCAACTCAAATGGCCCAACGGCTGGGGAATAGGGGAATAGCTAATTTCATTCAAATTATACCACATTGCTGTCAGCTTTCGCCATGTGAATTTAACTGAATTTTAGTTGAATA]


>consensus_10244#1 CCGTCGCCATTGCCGGCGTCGGAGCCGGACAAGGAGGTTCAGTGTACTGTACCGTGGTTT TGGGCCTTCTGAGCTATGGATGATCCAATGCATGGATGATCCAATGCTGAATGCGGTGAA GGAGGAGGAGAGCCACGGGGACGGAGGAGGGTTGGAGGTGGTGGCGGGAGAGGATGGGGC GGCGGCGGTGGCGGCGGGGTTGGCGCCGGGGCCGATGGAGGGGCTGCACGACGCCGGGCC GCCGCCGTTCCTGACCAAGACGTACGACATGGTGGACGACGCCGGCACCGACGCCGCCGT GTCGTGGAGCGCGACGAGCAACAGCTTCGTGGTGTGGGATCCCCACGCCTTCGCCACCGT CTTGCTCCCCAGGTTCTTCAAGCACAACAACTTCTCCAGCTTCGTCAGGCAGCTCAACAC CTATGGTTTCAGAAAGGTGGATCCTGATCGGTGGGAATTTGCAAATGAGAATTTCCTGCG GGGACAGAGACATCTTTTCAAGAACATCAAGCGTAGAAAACCACCTTCCCATACTGCTTC AAACCAGCAATCCTTTGGGCCATACCTTGAGGTGGGCCACTTTGGATATGATGCTGAGAT AGACCGGCTGAAGAGAGACAAGCAATTATTGATGGCTGAGGTGGTGAAGCTAAGGCAGGA GCAGCAGAATACAAAGGCAAATCTGAAAGCCATGGAGGATAGGCTGCAAGGAACCGAGCA GAGGCAAAAGCAGATGATCGCATTCTTGGCGCGTGTCATGAAAAATCCTGAGTTCTTAAA ACAACTTATGTCCCAGAATGAGATGAGAAAGGAGCTCCAAGATGCCATTTCAAAGAAAAG AAGGCGTCGCATAGATCAGGGACCTGAAGTTGACGACGTCGGCACTAGCAGTAGCATAGA GCAAGAGTCACCGGCCTTGTTTGATCCCCAGGAGTCGGTGGAATTCCTCATCGATGGGAT TCCCTCCGATCTTGAAAACTCAGCTATGGATGCTGGAGGTCTGGTGGAGCCACAGGATTT CGATGTCGGCGCCTCCCAACAGCAGCAGATCGGGCCCCAGGGGGAGTTGAACGACAATTT CTGGGAGGAGCTGCTGAACGAAGGGCTTGTTGGTGAGGAGAACGACAACCCGGTCGTCGA GGACGACATGAATGTGTTGTCGGAGAAGATGGGTTACCTCAACTCAAATGGCCCAACGGC TGGGGAATAGGGGAATAGCTAATTTCATTCAAATTATACCACATTGCTGTCAGCTTTCGC CATGTGAATTTAACTGAATTTTAGTTGAATA



consensusID : consensus_10244#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 602
fasta sequence
                              [CCTTCCTTTCCCGAAATAGCCACCCCTACCCTACCCTACCCTACCCACCCCCGCCAAGATCCCCGCCGCCGGCGAGCTCGAGCCCTTGGTGGTGCTCCGGCGGGCGTTGTCGCGGTCGGATCAGCTGCTGCTGGTGCTGGTGATGCCGCTCTCTCTTTCTTGCGTGTACTTCCGGGTGGGAGGTTGATGGCGATGGTGAGGTGTTCTTTGGCGCGGTTGCCCTCGCCCCCACTCTTATCTCCTCTCCTCGCCCATGCTACCTACCTTCCTCCCCCGCCGGAGCTGCTCTGCTGCTCGTACTAGCGTGGGAGCTGCCTCTTCTTGTTGAGCCATTTCTTGCCTACCAGGACAGGGTGCCTCGCCGTCGCCATTGCCGGCGTCGGAGCCGGACAAGGAGGTTCAGTGTACTGTACCGTGGTTTTGGGCCTTCTGAGCTATGGATGATCCAATGCTGAATGCGGTGAAGGAGGAGGAGAGCCCACGGGGACGGAGGAGGTTGGAGGGGGTGGCGGGAACGAGGCGAAACCCCGGGCCCCCCAGCTGGGCGGCCGGGCGCGCGGGCGGCGAGGGGAGGTGGGGGAGAACGTGGTCTGGAGCGGGTG]

[+] EMBL CA754843             [CCTTCCTTTCCCGAAATAGCCACCCCTACCCTACCCTACCCTACCCACCCCCGCCAAGATCCCCGCCGCCGGCGAGCTCGAGCCCTTGGTGGTGCTCCGGCGGGCGTTGTCGCGGTCGGATCAGCTGCTGCTGGTGCTGGTGATGCCGCTCTCTCTTTCTTGCGTGTACTTCCGGGTGGGAGGTTGATGGCGATGGTGAGGTGTTCTTTGGCGCGGTTGCCCTCGCCCCCACTCTTATCTCCTCTCCTCGCCCATGCTACCTACCTTCCTCCCCCGCCGGAGCTGCTCTGCTGCTCGTACTAGCGTGGGAGCTGCCTCTTCTTGTTGAGCCATTTCTTGCCTACCAGGACAGGGTGCCTCGCCGTCGCCATTGCCGGCGTCGGAGCCGGACAAGGAGGTTCAGTGTACTGTACCGTGGTTTTGGGCCTTCTGAGCTATGGATGATCCAATGCTGAATGCGGTGAAGGAGGAGGAGAGCCCACGGGGACGGAGGAGGTTGGAGGGGGTGGCGGGAACGAGGCGAAACCCCGGGCCCCCCAGCTGGGCGGCCGGGCGCGCGGGCGGCGAGGGGAGGTGGGGGAGAACGTGGTCTGGAGCGGGTG]
[+] EMBL CA754821             [CCTTCCTTTCCCGAAATAGCCACCCCTACCCTACCCTACCCTACCCACCCCCGCCAAGATCCCCGCCGCCGGCGAGCTCGAGCCCTTGGTGGTGCTCCGGCGGGCGTTGTCGCGGTCGGATCAGCTGCTGCTGGTGCTGGTGATGCCGCTCTCTCTTTCTTGCGTGTACTTCCGGGTGGGAGGTTGATG                                                                                                                                                                                                                                                                                                                                                                                                                             ]


>consensus_10244#2 CCTTCCTTTCCCGAAATAGCCACCCCTACCCTACCCTACCCTACCCACCCCCGCCAAGAT CCCCGCCGCCGGCGAGCTCGAGCCCTTGGTGGTGCTCCGGCGGGCGTTGTCGCGGTCGGA TCAGCTGCTGCTGGTGCTGGTGATGCCGCTCTCTCTTTCTTGCGTGTACTTCCGGGTGGG AGGTTGATGGCGATGGTGAGGTGTTCTTTGGCGCGGTTGCCCTCGCCCCCACTCTTATCT CCTCTCCTCGCCCATGCTACCTACCTTCCTCCCCCGCCGGAGCTGCTCTGCTGCTCGTAC TAGCGTGGGAGCTGCCTCTTCTTGTTGAGCCATTTCTTGCCTACCAGGACAGGGTGCCTC GCCGTCGCCATTGCCGGCGTCGGAGCCGGACAAGGAGGTTCAGTGTACTGTACCGTGGTT TTGGGCCTTCTGAGCTATGGATGATCCAATGCTGAATGCGGTGAAGGAGGAGGAGAGCCC ACGGGGACGGAGGAGGTTGGAGGGGGTGGCGGGAACGAGGCGAAACCCCGGGCCCCCCAG CTGGGCGGCCGGGCGCGCGGGCGGCGAGGGGAGGTGGGGGAGAACGTGGTCTGGAGCGGG TG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10244#0      TCACCTTCTCCGCCCTCCCCCCTCCGCCGCCTCCGCCGCTCCCCCACCTTCCAGAACCTT 60
consensus_10244#1      ------------------------------------------------------------
consensus_10244#2      ------------------------------------------------------------
                                                                                   

consensus_10244#0      CCTTTCCCGAAATAGCCACCCCTACCCTACCCTACCCTACCCACCCCCGCCAAGATCCCC 120
consensus_10244#1      ------------------------------------------------------------
consensus_10244#2      ------------------------------------------------------------
                                                                                   

consensus_10244#0      GCCGCCGGCGAGCTCGAGCCCTTGGTGGTGCTCCGGCGGGCGTTGTCGCGGTCGGATCAG 180
consensus_10244#1      ------------------------------------------------------------
consensus_10244#2      ------------------------------------------------------------
                                                                                   

consensus_10244#0      CTGCTGCTGGTGCTGGTGATGCCGCTCTCTCTTTCTTGCGTGTACTTCCGGGTGGGAGGT 240
consensus_10244#1      ------------------------------------------------------------
consensus_10244#2      ------------------------------------------------------------
                                                                                   

consensus_10244#0      TGATGGCGATGGTGAGGTGTTCTTTGGCGCGGTTGCCCTCGCCCCCACTCTTATCTCCTC 300
consensus_10244#1      ------------------------------------------------------------
consensus_10244#2      ------------------------------------------------------------
                                                                                   

consensus_10244#0      TCCTCGCCCATGCTACCTACCTTCCTCCCCCGCCGGAGCTGCTCTGCTGCTCGTACTAGC 360
consensus_10244#1      ------------------------------------------------------------
consensus_10244#2      ------------------------------------------------------------
                                                                                   

consensus_10244#0      GTGGGAGCTGCCTCTTCTTGTTGAGCCATTTCTTGCCTACAAGGACAGGGTGCCTCGCCG 420
consensus_10244#1      ---------------------------------------------------------CCG 3
consensus_10244#2      ------------------------------------------------------------
                                                                                   

consensus_10244#0      TCGCCATTGCCGGCGTCGGAGCCGGACAAGGAGGTTCAGTGTACTGTACCGTGGTTTTGG 480
consensus_10244#1      TCGCCATTGCCGGCGTCGGAGCCGGACAAGGAGGTTCAGTGTACTGTACCGTGGTTTTGG 63
consensus_10244#2      ------------------------------------------------------------
                                                                                   

consensus_10244#0      GCCTTCTGAGCTATGGATGATCCAATGC----------------TGAATGCGGTGAAGGA 524
consensus_10244#1      GCCTTCTGAGCTATGGATGATCCAATGCATGGATGATCCAATGCTGAATGCGGTGAAGGA 123
consensus_10244#2      ---------------------------------CCTTCCTTTCCCGAA-ATAGCCACCCC 26
                                                                    ***    *  *    

consensus_10244#0      GGAGGAGAGCCACGGGGACGGAGGAGGGTTGGAGGTG-GTGGCGGGAGAGGATGGGGCGG 583
consensus_10244#1      GGAGGAGAGCCACGGGGACGGAGGAGGGTTGGAGGTG-GTGGCGGGAGAGGATGGGGCGG 182
consensus_10244#2      TACCCTACCCTACCCTACCCACCCCCGCCAAGATCCCCGCCGCCGGCGAGCTCGAGCCCT 86
                                * **     *       *    **     *  ** ** ***   * * *  

consensus_10244#0      CGGCGGTGGCGGCGGGGGTGGCGCCGAGGCCGATGGAGGGGCTGCACGACGCCGG-GCCG 642
consensus_10244#1      CGGCGGTGGCGGCGGGGTTGGCGCCGGGGCCGATGGAGGGGCTGCACGACGCCGG-GCCG 241
consensus_10244#2      TGGTGGTGCTCCGGCGGGCGTTGTCGCGGTCGGATCAGCTGCTGC-TGGTGCTGGTGATG 145
                        ** ****     * **  *  * ** ** **    **  *****  *  ** ** *  *

consensus_10244#0      CCGCCGTTCCTGACCAAGACGTACGACATGGTGGACGACGCCGGCACCGACGCCGCCGTG 702
consensus_10244#1      CCGCCGTTCCTGACCAAGACGTACGACATGGTGGACGACGCCGGCACCGACGCCGCCGTG 301
consensus_10244#2      CCGCTCTCTCTTTCTTGCGTGTACTTCCGGGTGG--GAGGTTGATGGCGATGGTGAGGTG 203
                       ****  *  **  *      ****  *  *****  ** *  *    *** *  *  ***

consensus_10244#0      TCGTGGAGCGCGACGAGCAACAGCTTCGTGGTGTGGGATCCCCACGCCTTCGCCACCGTC 762
consensus_10244#1      TCGTGGAGCGCGACGAGCAACAGCTTCGTGGTGTGGGATCCCCACGCCTTCGCCACCGTC 361
consensus_10244#2      TTCTTTGGCGCGGTTGCCCTCGCCCCC----------ACTCTTATCTCCTCTCCTCGCCC 253
                       *  *   *****     *  *  *  *          *  *  *   * ** ** *   *

consensus_10244#0      TTGCTCCCCAGGTTCTTCAAGCACAACAACTTCTCCAGCTTCGTCAGGCAGCTCAACACC 822
consensus_10244#1      TTGCTCCCCAGGTTCTTCAAGCACAACAACTTCTCCAGCTTCGTCAGGCAGCTCAACACC 421
consensus_10244#2      ATGCTACCTACCTTCCTCCCCCGCCGGAGCTGCTCT-GCTGCTCGTACTAGCGTGGGAGC 312
                        **** ** *  *** **   * *   * ** ***  *** *       ***     * *

consensus_10244#0      TATGGTTTCAGAAAGGTGGATCCTGATCGGTGGGAATTTGCAAATGAGAATTTTCTGCGG 882
consensus_10244#1      TATGGTTTCAGAAAGGTGGATCCTGATCGGTGGGAATTTGCAAATGAGAATTTCCTGCGG 481
consensus_10244#2      TGCCTCTTCTT---GTTGAGCCATTTCTTGC-----CTACCAGGACAGGGTGCCTCGCCG 364
                       *     ***     * **   * *     *       *  **    **  *     ** *

consensus_10244#0      GGACAGAGACATCTTCTCAAGAACATCAAGCGTAGAAAACCACCTTCCCATACTGCTTCA 942
consensus_10244#1      GGACAGAGACATCTTTTCAAGAACATCAAGCGTAGAAAACCACCTTCCCATACTGCTTCA 541
consensus_10244#2      TCGCCATTGCCGGCGTCGGAG----CCGGACAAGGAGGTTCAGTGTACTGTACCGT---- 416
                          *     *         **     *   *   **    **   * *  *** *     

consensus_10244#0      AACCAGCAATCCCTTGGGCCATACCTTGAGGTGGGCCACT-TTGGATATGATGCTGAGAT 1001
consensus_10244#1      AACCAGCAATCCTTTGGGCCATACCTTGAGGTGGGCCACT-TTGGATATGATGCTGAGAT 600
consensus_10244#2      GGTTTTGGGCCTTCTGAGCTATG------GATGATCCAATGCTGAATGCGGTGAAGGAGG 470
                                 *   ** ** **       * **  *** *  ** **  * **  *    

consensus_10244#0      AGACCGGCTGA-AGAGAGACAAGCAATTATTGATGGCTGAGGTGGTGAAGCTAAGGCAGG 1060
consensus_10244#1      AGACCGGCTGA-AGAGAGACAAGCAATTATTGATGGCTGAGGTGGTGAAGCTAAGGCAGG 659
consensus_10244#2      AGGAGAGCCCACGGGGACGGAGGAGGTTGGAGGGGGTGGCGGGAACGAGGCGAAACCCCG 530
                       **    **  *  * **   * *   **   *  **  * **    ** ** **  *  *

consensus_10244#0      AGCAGCAGAATACAAAGGCAAATCTGAAAGCCATGGAGGATAGGCTGCAAGGAACCGAGC 1120
consensus_10244#1      AGCAGCAGAATACAAAGGCAAATCTGAAAGCCATGGAGGATAGGCTGCAAGGAACCGAGC 719
consensus_10244#2      GGCCCCCCAGCTGGGCGGCCGGGCGCGCGGGCGGCGAGGGGAGGTGGGGGAGAAC----- 585
                        **  *  *       ***    *     * *   ****  ***  *    ****     

consensus_10244#0      AGAGGCAACAGCAGATGATGGCATTCTTGGCGCGTGTCATGAAAAATCCTGAGTTCTTAA 1180
consensus_10244#1      AGAGGCAAAAGCAGATGATCGCATTCTTGGCGCGTGTCATGAAAAATCCTGAGTTCTTAA 779
consensus_10244#2      GTGGTCTGGAGCGGGTG------------------------------------------- 602
                          * *   *** * **                                           

consensus_10244#0      AACAACTTATGTCCCAGAATGAGATGAGAAAGGAGCTCCAAGATGCCATTTCAAAGAAAA 1240
consensus_10244#1      AACAACTTATGTCCCAGAATGAGATGAGAAAGGAGCTCCAAGATGCCATTTCAAAGAAAA 839
consensus_10244#2      ------------------------------------------------------------
                                                                                   

consensus_10244#0      GAAGGCGTCGCATAGATCAGGGACCTGAAGTTGACGACGTCGGCACTAGCAGTAGCATAG 1300
consensus_10244#1      GAAGGCGTCGCATAGATCAGGGACCTGAAGTTGACGACGTCGGCACTAGCAGTAGCATAG 899
consensus_10244#2      ------------------------------------------------------------
                                                                                   

consensus_10244#0      AGCAAGAGTCACCGGCCTTGTTTGATCCCCAGGAGTCGGTGGAATTCCTCATCGATGGGA 1360
consensus_10244#1      AGCAAGAGTCACCGGCCTTGTTTGATCCCCAGGAGTCGGTGGAATTCCTCATCGATGGGA 959
consensus_10244#2      ------------------------------------------------------------
                                                                                   

consensus_10244#0      TTCCCTCCGATCTTGAAAACTCAGCTATGGATGCTGGAGGTCTGGTGGAGCCACAGGATT 1420
consensus_10244#1      TTCCCTCCGATCTTGAAAACTCAGCTATGGATGCTGGAGGTCTGGTGGAGCCACAGGATT 1019
consensus_10244#2      ------------------------------------------------------------
                                                                                   

consensus_10244#0      TCGATGTCGGCGCCTCCGAACAGCAGCAGATCGGGCCCCAGGGGGAGTTGAACGACAATT 1480
consensus_10244#1      TCGATGTCGGCGCCTCCCAACAGCAGCAGATCGGGCCCCAGGGGGAGTTGAACGACAATT 1079
consensus_10244#2      ------------------------------------------------------------
                                                                                   

consensus_10244#0      TCTGGGAGGAGCTGCTGAACGAAGGGCTTGTTGGTGAGGAGAACGACAACCCGGTCGTCG 1540
consensus_10244#1      TCTGGGAGGAGCTGCTGAACGAAGGGCTTGTTGGTGAGGAGAACGACAACCCGGTCGTCG 1139
consensus_10244#2      ------------------------------------------------------------
                                                                                   

consensus_10244#0      AGGACGACATGAATGTGTTGTCGGAGAAGATGGGTTACCTCAACTCAAATGGCCCAACGG 1600
consensus_10244#1      AGGACGACATGAATGTGTTGTCGGAGAAGATGGGTTACCTCAACTCAAATGGCCCAACGG 1199
consensus_10244#2      ------------------------------------------------------------
                                                                                   

consensus_10244#0      CTGGGGAATAG--------CTAATTTCATTCAAATTATACCACATTGCTGTCAGCTTTCG 1652
consensus_10244#1      CTGGGGAATAGGGGAATAGCTAATTTCATTCAAATTATACCACATTGCTGTCAGCTTTCG 1259
consensus_10244#2      ------------------------------------------------------------
                                                                                   

consensus_10244#0      CCATGTGAATTTAACTGAATTTTAGTTGAATTTCTGCTTGCTACTGGCATGCCTCCCTCC 1712
consensus_10244#1      CCATGTGAATTTAACTGAATTTTAGTTGAATA---------------------------- 1291
consensus_10244#2      ------------------------------------------------------------
                                                                                   

consensus_10244#0      CTGTGTTACTGACCGTAGTGATTTGTTCGTTGTTAGGCCATATAGCCTGCCAGTCATGTA 1772
consensus_10244#1      ------------------------------------------------------------
consensus_10244#2      ------------------------------------------------------------
                                                                                   

consensus_10244#0      AAATGAGTAAAGGTGTTGATGATCCACAAATGTTCTGTTCCGTGTTGTCAGATGGTCTGC 1832
consensus_10244#1      ------------------------------------------------------------
consensus_10244#2      ------------------------------------------------------------
                                                                                   

consensus_10244#0      CTGTATTTGTAGTCGTGCTTAGTGTGTGCAATGTTGTAATGATATCTAATATTAATCTGT 1892
consensus_10244#1      ------------------------------------------------------------
consensus_10244#2      ------------------------------------------------------------
                                                                                   

consensus_10244#0      ACTTCTCGTAATGACATCTGATCTTAATCTGATTGCAGAAGTGCTTTGAATTGCAAAAAA 1952
consensus_10244#1      ------------------------------------------------------------
consensus_10244#2      ------------------------------------------------------------
                                                                                   

consensus_10244#0      ACAAAAAA 1960
consensus_10244#1      --------
consensus_10244#2      --------
                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)