These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10245#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 965 fasta sequence [TTTTTTTAATAGCATACACACAATTAATTAATTGAAGTCTATAAGGTAATTATGCATCCTTTTTCCTGGAAGCTGAGCCAGGGTGTTCGATCCAGCACTTTTTCTAGTGGTAGATCAGCGTCTGTATGTATGTATGTATCTACATGACTACGAAGCAATAAAATAAAAGATATTTCTGCAATTGAACTGCCTCCCATCACGCGGTGAGGTCGGACAGCTTGAAGGAGTCGGCGACGACTTTGAGCCTGTTCCTCAGCCTACTCCATCGCCGCTCGTTCGCCGTCACGATCAGTGTGTAGTACCGACCGTTTCCAATGACAACCGTCGCAAATGCGGACACGCCGTAGCCCGGGGCCTCAAGATCGTACTCAAATGTCCAGTAGTTCTTGCCATCCACGGTGCGCTCTTGCATGTCATAGACAGTTGGTATTTGATTTGGAGCAGCATAAACATTGTTCACCAAATTGAAGATCGCCTCATCCATTGGACCAAGGTCACGGATATCTGTTTTTGTAGTAGGAATGAAGCCCACAC-GCACGCACTGCAGCGCTACATTACGATCTTTGAACGCTGAATCATGCCCCAGGAAGTCGA-AAT-CCCTCCAATCAGCTGGATACAGGTATGAATATCCATCTTTTGAATCCACATAAGACTTGTAATTCTTTGGCACTTCTT-CAGCATATGCAGAGCTGCTCTTTAGCAGACCAGTGGCTAATGCTCCAGCA-CCAAGCAGAGCTAATCTCCTCCTTGTCACATTCTTTTCATCCGAGGATGCTTCACTCGAGCTAGCGTTGACGACTGACAGAGGAGACGCATTCAGCTTGCTGGTAACAGCACAATTTGGAGCAACCAACTGCTTGGAAACGGAGCAGATCAAATTCTGCAGGCTTGCCATTTCACCTGCAGGAGTAGCTATGAACCTGAAGAAAATACGTGTTCTTGCCTTCCTCCAGTCAAGTTATCCT] [+] EMBL CF298237 [TTTTTTTAATAGCATACACACAATTAATTAATTGAAGTCTATAAGGTAATTATGCATCCTTTTTCCTGGAAGCTGAGCCAGGGTGTTCGATCCAGCACTTTTTCTAGTGGTAGATCAGCGTCTGTATGTATGTATGTATCTACATGACTACGAAGCAATAAAATAAAAGATATTTCTGCAATTGAACTGCCTCCCATCACGCGGTGAGGTCGGACAGCTTGAAGGAGTCGGCGACGACTTTGAGCCTGTTCCTCAGCCTACTCCATCGCCGCTCGTTCGCCGTCACGATCAGTGTGTAGTACCGACCGTTTCCAATGACAACCGTCGCAAATGCGGACACGCCGTAGCCCGGGGCCTCAAGATCGTACTCAAATGTCCAGTAGTTCTTGCCATCCACGGTGCGCTCTTGCATGTCATAGACAGTTGGTATTTGATTTGGAGCAGCATAAACATTGTTCACCAAATTGAAGATCGCCTCATCCATTGGACCAAGGTCACGGATATCTGTTTTTGTAGTAGGAATGAAGCCCACAC GCACGCACTGCAGCGCTACATTACGATCTTTGAACGCT ] [-] EMBL AA754400 [ CCTCCCATCACGCGGTGAGGTCGGACAGCTTGAAGGAGTCGGCGACGACTTTGAGKCTGTTCCTCAGKCTWCTCCATCGCCGCTCGTTCGCCGTCACGATCAGTGTGTAGTACCGACCGTTTCCAATGGCAACCGTCGCAAATGCGGACACGCCGTAGCCCGGGGCCTCAAGATCGTACTCAAATGTCCAGTAGTTCTTGCCATCCACGGTGCGCTCTTGCATGTCATAGACAGTTGGTATTTGATTTGGAGCAGCATAAACATTGTTCACCAAATTGAAGATCGCCTCATCCATTGGACCAAGGTCACGGATATCTGTTTTTGTAGTAGGAATGAAGCCCACAC GCACGCACTGCAGCGCTACATTACGATCTTTGAACGCTGAATCATGCCCCAGGAAGTCGA AAT CCCTCCAATCAGGTGGActcg ] [-] EMBL CF298238 [ CCTCATCCATTGGACCAAGGTCACGGATATCTGTTTTTGTAGTAGGAATGAAGCCCACAC GCACGCACTGCAGCGCTACATTACGATCTTTGAACGCTGAATCATGCCCCAGGAAGTCGA AAT CCCTCCAATCAGCTGGATACAGGTATGAATATCCATCTTTTGAATCCACATAAGACTTGTAATTCTTTGGCACTTCTT CAGCATATGCAGAGCTGCTCTTTAGCAGACCAGTGGCTAATGCTCCAGCA CCAAGCAGAGCTAATCTCCTCCTTGTCACATTCTAAACATCCGAGGATGCTTCACTCGAGCTAGCGTTGACGACTGACAGAGGAGACGCATTCAGCTTGCTGGTAACAGCACAATTTGGAGCAACCAACTGC TGGAAACGGAGCAGATCAAATTCTGCAGGCTTGCCATTTCA ] [-] EMBL CF308597 [ CCAAGGTCACGGATATCTGTTTTTGTAGTAGGAATGAAGCCCACAC GCACGCACTGCAGCGNTACATTACGATCTTTGAACGCTGAATCATGCCNCAGGAAGTCGA AATCCCCTCCAATCAGCTGGATACAGGTATGAATATCCATCTTTTGAATCCACATAAGACTTGTAATTCTTTGGCACTTCTTNCAGCATATGCAGAGCTGCTCTTTAGCAGACCAGTGGCTAATGCTCCAGCA CCAAGCAGAGCTAATCTCCTCCTTGTCACATTCTTTTCATCCGAGGATGCTTCACTCGAGCTAGCGTTGACGACTGACAGAGGAGACGCATTCAGCTTGCTGGTAACAGCACAATTTGGAGCAACCAACTGCTTGGAAACGGAGCAGATCAAATTCTGCAGGCTTGCCATTTCACCTGCAGGAGTAGCTATGAACCTGAAGAAAATACGTGTTCTTGCCTTCCTCCAGTCAA ] [-] EMBL CF308134 [ AGGTCACGGATATCTGTTTTTGTAGTAGGAATGAAGCCCACACGGCACGCANTGCAGCGCTACATTACGATCTTTGAACGCTGAATCATGCCCCAGGAAGTCGANAATCCCCTCCAATCAGCTGGATACAGGTATGAATATCCATCTTTTGAATCCACATAAGACTTGTAATTCTTTGGCACTTCTTCCAGCATATGCAGAGCTGCTCTTTAGCAGACCAGTGGCTAATGCTCCAGCA CCAAGCAGAGCTAATCTCCTCCTTGTCACATTCTTTTCATCCGAGGATGCTTCACTCGAGCTAGCGTTGACGACTGACAGAGGAGACGCATTCAGCTTGCTGGTAACAGCACAATTTGGAGCAACCAACTGCTTGGAAACGGAGCAGATCAAATTCTGCAGGCTCGCCATTTCACCTGCAGGAGTAGCTATGAACCTGAAGAAAATACGTGTTCTTGCCTTCCTCCAGTCAAGTTATCCT] [-] EMBL OSS10335A [ GCATATGCAGAGCTGCTCTTTAGCAGACCAGTGGCTAATGCTCCAGCACCCAAGCAGAGCTAATCTCCTCCTTGTNACATTCTTTTCATCCGAGGATGCTTAACTCGAGCTAGCGTTGACGACTGACAGAGGAGACGCATTCAGCTTGCTGGTAACAGCACAATTTGGAGCAACCAACTGCTTGGAAACGGAGCAGATCAAATTCTGCAGGCTTGCCATTTCACCTGCAGGAGTAGCTATGAACCTGAAGAAAATACGTGTTCTTGCCTT ] consensusID : consensus_10245#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence [ATTTGCAAGTCTATAAGGTAATTATGCATCTTTTTCCTGGAAGCTGAGCCAGGGTGTTCGATCCAGCACCTTTTCTAGTGGTAGTTCAGCGTCTGTATGTATGTATGTATGTATCTACATGACTACGGAGCAATAAAATAAAAGATATTTCTGCAATTGAACTGCCTCCCATCACGCGGTGAGGTCGGACAGCTTGAAGGAGTCGGCGACGACTTTTGAGCCTGTTCCTCAGCCTACTCCATCGCCGCTCGTCGCCGTCACGATCAGTGTGTAGTACCGCCGTTCATGGCACCGTCGAAATCTGCACGCGTAGCCCGTGCTCAAGATCGYACTCWMATGTC] [+] EMBL OS37964 [ATTTGCAAGTCTATAAGGTAATTATGCATCTTTTTCCTGGAAGCTGAGCCAGGGTGTTCGATCCAGCACCTTTTCTAGTGGTAGTTCAGCGTCTGTATGTATGTATGTATGTATCTACATGACTACGGAGCAATAAAATAAAAGATATTTCTGCAATTGAACTGCCTCCCATCACGCGGTGAGGTCGGACAGCTTGAAGGAGTCGGCGACGACTTTTGAGCCTGTTCCTCAGCCTACTCCATCGCCGCTCGTCGCCGTCACGATCAGTGTGTAGTACCGCCGTTCATGGCACCGTCGAAATCTGCACGCGTAGCCCGTGCTCAAGATCGYACTCWMATGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10245#0 TTTTTTTAATAGCATACACACAATTAATTAATTG-AAGTCTATAAGGTAATTATGCATCC 59 consensus_10245#1 -----------------------------ATTTGCAAGTCTATAAGGTAATTATGCATC- 30 * *** ************************ consensus_10245#0 TTTTTCCTGGAAGCTGAGCCAGGGTGTTCGATCCAGCACTTTTTCTAGTGGTAGATCAGC 119 consensus_10245#1 TTTTTCCTGGAAGCTGAGCCAGGGTGTTCGATCCAGCACCTTTTCTAGTGGTAGTTCAGC 90 *************************************** ************** ***** consensus_10245#0 GTCTGTATGTATGTATGTAT----CTACATGACTACGAAGCAATAAAATAAAAGATATTT 175 consensus_10245#1 GTCTGTATGTATGTATGTATGTATCTACATGACTACGGAGCAATAAAATAAAAGATATTT 150 ******************** ************* ********************** consensus_10245#0 CTGCAATTGAACTGCCTCCCATCACGCGGTGAGGTCGGACAGCTTGAAGGAGTCGGCGAC 235 consensus_10245#1 CTGCAATTGAACTGCCTCCCATCACGCGGTGAGGTCGGACAGCTTGAAGGAGTCGGCGAC 210 ************************************************************ consensus_10245#0 GACTTT-GAGCCTGTTCCTCAGCCTACTCCATCGCCGCTCGTTCGCCGTCACGATCAGTG 294 consensus_10245#1 GACTTTTGAGCCTGTTCCTCAGCCTACTCCATCGCCGCTCGT-CGCCGTCACGATCAGTG 269 ****** *********************************** ***************** consensus_10245#0 TGTAGTACCGACCGTTTCCAATGACAACCGTCGCAAATGCGGACACGCCGTAGCCCGGGG 354 consensus_10245#1 TGTAGTACCG-CCGTTC---ATGGCA-CCGTCG-AAATCTGCACG---CGTAGCCCGTG- 319 ********** ***** *** ** ****** **** * ** ********* * consensus_10245#0 CCTCAAGATCGTACTCAAATGTCCAGTAGTTCTTGCCATCCACGGTGCGCTCTTGCATGT 414 consensus_10245#1 -CTCAAGATCGYACTCWMATGTC------------------------------------- 341 ********** **** ***** consensus_10245#0 CATAGACAGTTGGTATTTGATTTGGAGCAGCATAAACATTGTTCACCAAATTGAAGATCG 474 consensus_10245#1 ------------------------------------------------------------ consensus_10245#0 CCTCATCCATTGGACCAAGGTCACGGATATCTGTTTTTGTAGTAGGAATGAAGCCCACAC 534 consensus_10245#1 ------------------------------------------------------------ consensus_10245#0 GCACGCACTGCAGCGCTACATTACGATCTTTGAACGCTGAATCATGCCCCAGGAAGTCGA 594 consensus_10245#1 ------------------------------------------------------------ consensus_10245#0 AATCCCTCCAATCAGCTGGATACAGGTATGAATATCCATCTTTTGAATCCACATAAGACT 654 consensus_10245#1 ------------------------------------------------------------ consensus_10245#0 TGTAATTCTTTGGCACTTCTTCAGCATATGCAGAGCTGCTCTTTAGCAGACCAGTGGCTA 714 consensus_10245#1 ------------------------------------------------------------ consensus_10245#0 ATGCTCCAGCACCAAGCAGAGCTAATCTCCTCCTTGTCACATTCTTTTCATCCGAGGATG 774 consensus_10245#1 ------------------------------------------------------------ consensus_10245#0 CTTCACTCGAGCTAGCGTTGACGACTGACAGAGGAGACGCATTCAGCTTGCTGGTAACAG 834 consensus_10245#1 ------------------------------------------------------------ consensus_10245#0 CACAATTTGGAGCAACCAACTGCTTGGAAACGGAGCAGATCAAATTCTGCAGGCTTGCCA 894 consensus_10245#1 ------------------------------------------------------------ consensus_10245#0 TTTCACCTGCAGGAGTAGCTATGAACCTGAAGAAAATACGTGTTCTTGCCTTCCTCCAGT 954 consensus_10245#1 ------------------------------------------------------------ consensus_10245#0 CAAGTTATCCT 965 consensus_10245#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||