These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10246#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 781 fasta sequence [TCTTTCTCTCTACCTTATCTCTTCTCCTCTTCTCTCCGGCTTCCCACCGGTCTCCTCCCCGGCTGGCTTCCCCTCCTCCTTCCCCCTCCCCTGGGCGAGGCGGTGGCTGGGCGCGGCGGCGGCCTGGGCGACGGCTGGGAGTGGGCCGACGACGACGAACAGGCCAGAAGGCGAGCCGGCCACGGCAGCGAGTGGGCGAGGCGGCGGCTAGGCGAGCCGGGCGCTGGGAAAAACACAGAGAAACATGTAGAACAAAGGGCTGCAAGATTCTTGCCAACTACAGTGAAGGCAGGGATGTGGCGGCTGTTAACACTAATCATGACTTGTACATGTATTAGAATATTTTGCATGTGTTGTCGTGCATAGATCGGTAAAGGTTCGCGCGTGTGTTGCATGTAGGAGTTAATTTAATTAGTGGAATAACTAGATGCATGGAATTAGCAAGTAGTTAGTTAGTTGTATGCGTGATTAGGTGGTCAGGCTGGTAGACCGCTTCATGTGGATCATGGAGTTAGTGAGTCTGTTGTGCATGAGTTCGTGGCTCGTGCAGGCCGTGCGTACGTGCGCGTATGACCTGGGGAGTAGGCGCTCCCGTATGTGCATGTGAGGAAGACTAGCTAGCTATATAAGCTATGTAATCATCTGTTTACGTGTGTGTTAATTAACAAAGAAAAGAGGAAAGGCATTAGTT---GCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK106751 [TCTTTCTCTCTACCTTATCTCTTCTCCTCTTCTCTCCGGCTTCCCACCGGTCTCCTCCCCGGCTGGCTTCCCCTCCTCCTTCCCCCTCCCCTGGGCGAGGCGGTGGCTGGGCGCGGCGGCGGCCTGGGCGACGGCTGGGAGTGGGCCGACGACGACGAACAGGCCAGAAGGCGAGCCGGCCACGGCAGCGAGTGGGCGAGGCGGCGGCTAGGCGAGCCGGGCGCTGGGAAAAACACAGAGAAACATGTAGAACAAAGGGCTGCAAGATTCCTGCCAACTACAGTGAAGGCAGGGATGTGGCGGCTGTTAACACTAATCATGACTTGTACATGTATTAGAATATTTTGCATGTGTTGTCGTGCATAGATCGGTAAAGGTTCGCGCGTGTGTTGCATGTAGGAGTTAATTTAATTAGTGGAATAACTAGATGCATGGAATTAGCAAGTAGTTAGTTAGTTGTATGCGTGATTAGGTGGTCAGGCTGGTAGACCGCTTCATGTGGATCATGGAGTTAGTGAGTCTGTTGTGCATGAGTTCGTGGCTCGTGCAGGCCGTGCGTACGTGCGCGTATGACCTGGGGAGTAGGCGCTCCCGTATGTGCATGTGAGGAAGACTAGCTAGCTATATAAGCTATGTAATCATCTGTTTACGTGTGTGTTAATTAACAAAGAAAAGAGGAAAGGCAT ] [+] EMBL AU101408 [ CTCTTCTCCTCTTCTCTCCGGCTTCCCACCGGTCTCCTCCCCGGCTGGCTTCCCCTCCTCCTTCCCCCTCCCCTGGGCGAGGCGGTGGCTGGGCGCGGCGGCGGCCTGGGCGACGGCTGGGAGTGGGCCGACGACGACGAACAGGCCAGAAGGCGAGCCGGCCACGGCAGCGAGTGGGCGAGGCGGCGGCTAGGCGAGCCGGGCGCTGGGAAAAACACAGAGAAACATGTAGAACAAAGGGCTGCAAGATTCTTGCCAACTACAGTGAAGGCAGGGATGTGGCGGCTGTTAACACTAATCATGACTTGTACATGTATTAGAATATTTTGCATGTGTTGTCGTGCATAGATCGGTAAAGGTTCGCGCGTGTGTTGCATGTAGGAGTTAATTTAATTAGTGGAATAACTAGATGCATGGAATTAGCAAGTAGTTAGTTAGTTGTATGCGTGATTAGGTGGTCAGGCTGGTAGACCGCTTCATGTGGATCATGGAGT ] [+] EMBL AU197785 [ CTTCCCCTCCTCCTTCCCCCTCCCCTGGGCGAGGCGGTGGCTGGGCGCGGCGGCGGCCTGGGCGACGGCTGGGAGTGGGCCGACGACGACGAACAGGCCAGAAGGCGAGCCGGCCACGGCAGCGAGTGGGCGAGGCGGCGGCTAGGCGAGCCGGGCGCTGGGAAAAACACAGAGAAACATGTAGAACAAAGGGCTGCAAGATTCTTGCCAACTACAGTGAAGGCAGGGATGTGGCGGCTGTTAACACTAATCATGACTTGTACATGTATTAGAATATTTTGCATGTGTTGTCGTGCATAGATCGGTAAAGGTTCGCGCGTGTGTTGCATGTAGGAGTTAATTTAATTAGTGGAATAACTAGATGCATGGAATTAGCAAGTAGTTAGTTAGTTGTATGCGTGATTAGGTGGTC ] [+] EMBL AU101409 [ ACACAGAGAAACATGTAGANCAAAGGGCTGCAAGATTCTTGCCAACTACAGTGAAGGCAGGGATGTGGCGGCTGTTAACACTAATCATGACTTGTACATGTATTAGAATATTTTGCATGTGTTGTCGTGCATAGATCGGTAAAGGTTCGCGCGTGTGTTGCATGTAGGAGTTAATTTAATTAGTGGAATAACTAGATGCATGGAATTAGCAAGTAGTTAGTTAGTTGTATGCGTGATTAGGTGGTCAGGCTGGTAGACCGCTTCATGTGGATCATGGAGTTAGTGAGTCTGTTGTGCATGAGTTCGTGGCTCGTGCAGGCCGTGCGTACGTGCGCGTATGACCTGCGGAGTAGGCGCTCCCGTATGTGCATGTGAGGAAGACTAGCTAGCTATATAAGCTATGTAATCATCTGTTTACGTGTGTGTTAATTAACAAAGAAAAGAGGAAAGGCATTAGTT GCAAAAA ] [+] EMBL AU197786 [ AACATGTAGAACAAAGGGCTGCAAGATTCTTGCCAACTACAGTGAAGGCAGGGATGTGGCGGCTGTTAACACTAATCATGACTTGTACATGTATTAGAATATTTTGCATGTGTTGTCGTGCATAGATCGGTAAAGGTTCGCGCGTGTGTTGCATGTAGGAGTTAATTTAATTAGTGGAATAACTAGATGCATGGAATTAGCAAGTAGTTAGTTAGTTGTATGCGTGATTAGGTGGTCAGGCTGGTAGACCGCTTCATGTGGATCATGGAGTTAGTGAGTCTGTTGTGCATGAGTTCGTGGCTCGTGCAGGCCGTGCGTACGTGCGCGTATGACCTGGGGAGTAGGCGCTCCCGTATGTGCATGTGAGGAAGACTAGCTAGCTATATAAGCTATGTAATCATCTGTTTACGTGTGTGTTAATTAACAAAaa ] [+] EMBL CF320829 [ TATGTGCATGTGAGGAAGACTAGCTAGCTATATAAGCTATGTAATCATCTGTTTACGTGTGTGTTAATTAACAAAGAAAAGAGGAAAGGCATTAGTTGCCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_10246#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 131 fasta sequence [GAGTAGGCGCTCCCGTATGTGCATGTGAGGAAGACTAGCTAGCTATATAAGCTATGTAATCATCTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF317306 [GAGTAGGCGCTCCCGTATGTGCATGTGAGGAAGACTAGCTAGCTATATAAGCTATGTAATCATCTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10246#0 TCTTTCTCTCTACCTTATCTCTTCTCCTCTTCTCTCCGGCTTCCCACCGGTCTCCTCCCC 60 consensus_10246#1 ------------------------------------------------------------ consensus_10246#0 GGCTGGCTTCCCCTCCTCCTTCCCCCTCCCCTGGGCGAGGCGGTGGCTGGGCGCGGCGGC 120 consensus_10246#1 ------------------------------------------------------------ consensus_10246#0 GGCCTGGGCGACGGCTGGGAGTGGGCCGACGACGACGAACAGGCCAGAAGGCGAGCCGGC 180 consensus_10246#1 ------------------------------------------------------------ consensus_10246#0 CACGGCAGCGAGTGGGCGAGGCGGCGGCTAGGCGAGCCGGGCGCTGGGAAAAACACAGAG 240 consensus_10246#1 ------------------------------------------------------------ consensus_10246#0 AAACATGTAGAACAAAGGGCTGCAAGATTCTTGCCAACTACAGTGAAGGCAGGGATGTGG 300 consensus_10246#1 ------------------------------------------------------------ consensus_10246#0 CGGCTGTTAACACTAATCATGACTTGTACATGTATTAGAATATTTTGCATGTGTTGTCGT 360 consensus_10246#1 ------------------------------------------------------------ consensus_10246#0 GCATAGATCGGTAAAGGTTCGCGCGTGTGTTGCATGTAGGAGTTAATTTAATTAGTGGAA 420 consensus_10246#1 ------------------------------------------------------------ consensus_10246#0 TAACTAGATGCATGGAATTAGCAAGTAGTTAGTTAGTTGTATGCGTGATTAGGTGGTCAG 480 consensus_10246#1 ------------------------------------------------------------ consensus_10246#0 GCTGGTAGACCGCTTCATGTGGATCATGGAGTTAGTGAGTCTGTTGTGCATGAGTTCGTG 540 consensus_10246#1 ------------------------------------------------------------ consensus_10246#0 GCTCGTGCAGGCCGTGCGTACGTGCGCGTATGACCTGGGGAGTAGGCGCTCCCGTATGTG 600 consensus_10246#1 ---------------------------------------GAGTAGGCGCTCCCGTATGTG 21 ********************* consensus_10246#0 CATGTGAGGAAGACTAGCTAGCTATATAAGCTATGTAATCATCTGTTTACGTGTGTGTTA 660 consensus_10246#1 CATGTGAGGAAGACTAGCTAGCTATATAAGCTATGTAATCATCTGTT------------- 68 *********************************************** consensus_10246#0 ATTAACAAAGAAAAGAGGAAAGGCATTAGTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAA 720 consensus_10246#1 ---AAAAAAAAAAAAAAAAAA------------AAAAAAAAAAAAAAAAAAAAAAAAAAA 113 ** *** **** * *** *************************** consensus_10246#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 780 consensus_10246#1 AAAAAAAAAAAAAAAAAA------------------------------------------ 131 ****************** consensus_10246#0 A 781 consensus_10246#1 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||