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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10251#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 847 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTGAAAATAAAAGGCTGAGATCAATAG-ATATTGAGTTTGACAACCA-GATAAC-CTTTTTACATTTGTTTTCAACTCTTCTGATGGAGCATGAACAACACAGTTACTTACAGCTGGTACTTTCTATTTCTTTCGTGAATGGATTACAAGTGATACCTAACCACACGGTGGGGTACGCCATGTTTGCAAACTAGATTTGGACAGCTGGTGGATACACCCATCACAGGTATACACATCCTTTTAGCCATCAGCAGGTAACTGCTCTAACTGCTCTTCCTCAAGCTCCATTTTAGATAGGTAGCATTCTCTCTCAAAAAGCAGGAATTCCTGCAACTGCTGTTGGCTGAACAAATGCATTATTCCAGATTCCGATGAAGCAACCAACTCAATGAGCTTATCACAATGATCTAGAGAATCACCTGCTTCAGATAGAGCGATGGATGCCTGCATAGATCGTAGAATAGTTTCTGGCAGGCAGCATCTACGACAAAGCCCACGAATTATGTATGCAGCAGTGCTTTCTACTGAACCATGACCATCAGAATACCAAGCATCAAGCCGTGATATTTCAATTGAAACTCCAGGTT-GAAATCGATTGAGTTCACCTTTGAACCCAGCAGCCATAATTGCAGCAAGAAGACCTCCATCATTGGCTTCATGAAGCCCCAAACCATCACCTTCTACTGCTAGGCAGAGGAGAGAAACTTGAATACAGCAAGGATCTTTAGATGAAACATTCACATCCACCTTCAATTGACGATGCAACACTTCCGTTTCACTAACAGTAGAGTACAATGCACTTGTCAAAGCTGTGCAT]
[-] EMBL AU092203 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTGAAAATAAAAGGCTGAGATCAATAG ATATTGAGTTTGACAACCA GATAAC CTTTTTACATTTGTTTTCAACTCTTCTGATGGAGCATGAACAACACAGTTACTTACAGCTGGNACTTTCTATTTCTTTCGTGAATGGATTACAAGTGATACCTAACCACACGGNGGGGNACGCCATGTTTGCAAACTAGATTTGGACAGCTGGTGGATACACCCATCACAGGNATACACATCCTTTTAGCCATCAGCAGGNAACTGCTCTAACTGCTCTTCCTCAAGCTCCATTTTAGATAGGNAGCATTCTCTCTCAAAAAGCAGGAATTCCTGCAACTGCTGTTGGCTGAACAAATGCATTATTCCAGATTCCGATGAAGCAACCAACTCAATGAGCTTATCACAATGATCTAGAGAATCACCTGCTTCAGATAGAGCGATGGATGCCTGCATAGATCGTAGAATAGTTTCTGGCAGGNAGCATCTACGACAAAGCCCACGAATTATGTATGCAGCAGTGCTTTCTACTGAACCATGACCATCAGAATACCAAGCATCAAGCCGNGATATTTCAATTGAAACTCCAGGTTNGAAATCGATTGAGTTCA ]
[+] EMBL CB634141 [ cccTTTTTTTTTTTTAGTGAAAATAAAAGGCTGAGATCAATAC ATATTGAGTTTGACAACCATGATAACNCTTTTTACATTTGTTTTCAACTCTTCTGATGGAGCATGAACAACTCCCTTACTTACAGCTGGTACTTTCTATTTCTTTCGTGAATGGATTACAAGTGATACCTAACCACACGGGGGGGTACGCCATGTTTGCAAACTAGATTTGGACAGCTGGTGGATACACCCATCACAGGTATACACATCCTTTTAGCCATCAGCAGGTAACTGCTCTAACTGCTCTTCCTCAAGCTCCATTTTAGATAGGTAGCATTCTCTCTCAAAAAGCAGGAATTCCTGCAACTGCTGTTGGCTGAACAAATGCATTATTCCAGATTCCGATGAAGCAACCAACTCAATGAGCTTATCACAATGATCTAGAGAATCACCTGCTTCAGATAGAGCGATGGATGCCTGCATAGATCGTAGAATAGTTTCTGGCAGGCAGCATCTACGACAAAGCCCACGAATTATGTATGCAGCAGTGCTTTCTACTGAACCATGACCATCAGAATACCAAGCATCAAGCCGTGATATTTCAATTGAAACTCCAGGTT GAAATCGATTGAGTTCACCTTTGAACCCAGCAGCCATAATTGCAGCAAGAAGACCTCCATCATTGGCTTCATGAAGCCCCAAACCATCACCTTCTACTGCTAGGCAGAGGAGAGAAACTTGAATACAGCAAGGATCTTTAGATG ]
[+] EMBL CB632735 [ tccttaaTTTTTTAGTGAAAATAAAAGGCTGAGATCAATAGCACATTGAGTTTGACAACCA GATAAC CTTTTTACATTTGTTTTCAACTCTTCTGATGGAGCATGAACAACACAGTTACTTACAGCTGGTACTTTCTATTTCTTTCGTGAATGGATTACAAGTGATACCTAACCACACGGTGGGGTACGCCATGTTTGCAAACTAGATTTGGACAGCTGGTGGATACACCCATCACAGGTATACACATCCTTTTAGCCATCAGCAGGTAACTGCTCTAACTGCTCTTCCTCAAGCTCCATTTTAGATAGGTAGCATTCTCTCTCAAAAAGCAGGAATTCCTGCAACTGCTGTTGGCTGAACAAATGCATTATTCCAGATTCCGATGAAGCAACCAACTCAATGAGCTTATCACAATGATCTAGAGAATCACCTGCTTCAGATAGAGCGATGGATGCCTGCATAGATCGTAGAATAGTTTCTGGCAGGCAGCATCTACGACAAAGCCCACGAATTATGTATGCAGCAGTGCTTTCTACTGAACCATGACCATCAGAATACCAAGCATCAAGCCGTGATATTTCAATTGAAACTCCAGGTT GAAATCGATTGAGTTCACCTTTGAACCCAGCAGCCATAATTGCAGCAAGAAGACCTCCATCATTGGCTTCATGAAGCCCCAAACCATCACCTTCTACTGCTAGGCAGAGGAGAGAAACTTGAATACAGCAAGGATCTTTAGATGAAACATTCACATCCACCTTCAATTGACGATGCAACACTTCCGTTTCACTAACAGTAGAGTACAATGCACTTGTCAAAGCTGTGCAT]
[-] EMBL AU069249 [ TTTTTAGTGAAAATAAAAGGCTGAGATCAATAG ATATTGAGTTTGACAACCA GATAAC CTTTTTACATTTGTTTTCAACTCTTCTGATGGAGCATGAACAACACAGTTACTTACAGCTGGTACTTTCTATTTCTTTCGTGAATGGATTACAAGTGATACCTAACCACACGGTGGGGTACGCCATGTTTGCAAACTAGATTTGGACAGCTGGTGGATACACCCATCACAGGTATACACATCCTTTTAGCCATCAGCAGGTAACTGCTCTAACTGCTCT ]
consensusID : consensus_10251#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 795 fasta sequence
[AAAACACTTAGATGTGCAATTTCCCTATTCCCTGAAACATCATTCTCCTTTGGGCCATACAACCACACATTTCCTAAATAAATAAGTAGTTTATGTTGCATGTTTCGAAAATGTAAAATATGCACAGACTAGTCTTACTGATTCCTCTGAGTACAGGAGAAAACGGTTAAATGGTCATTATTACAACCAAAATGTAACATCAACCTTTTAGCCATCAGCAGGTAACTGCTCTAACTGCTCTTCCTCAAGCTCCATTTTAGATAGGTAGCATTCTCTCTCAAAAAGCAGGAATTCCTGCAACTGCTGTTGGCTGAACAAATGCATTATTCCAGATTCCGATGAAGCAACCAACTCAATGAGCTTATCACAATGATCTAGAGAATCACCTGCTTCAGATAGAGCGATGGATGCCTGCATAGATCGTAGAATAGTTTCTGGCAGGCAGCATCTACGACAAAGCCCACGAATTATGTATGCAGCAGTGCTTTCTACTGAACCATGACCATCAGAATACCAAGCATCAAGCCGTGATATTTCAATTGAAACTCCAGGTTGAAATCGATTGAGTTCACCTTTGAACCCAGCAGCCATAATTGCAGCAAGAAGACCTCCATCATTGGCTTCATGAAGCCCCAAACCATCACCTTCTACTGCTAGGCAGAGGAGAGAAACTTGAATACAGCAAGGATCTTTAGATGAAACATTCACATCCACCTTCAATTGACGATGCAACACTTCCGTTTCACTAACAGTAGAGTACAATGCACTTGTCAAAGCTGTGCATGATGTTGCATC]
[+] EMBL CB665822 [AAAACACTTAGATGTGCAATTTCCCTATTCCCTGAAACATCATTCTCCTTTGGGCCATACAACCACACATTTCCTAAATAAATAAGTAGTTTATGTTGCATGTTTCGAAAATGTAAAATATGCACAGACTAGTCTTACTGATTCCTCTGAGTACAGGAGAAAACGGTTAAATGGTCATTATTACAACCAAAATGTAACATCAACCTTTTAGCCATCAGCAGGTAACTGCTCTAACTGCTCTTCCTCAAGCTCCATTTTAGATAGGTAGCATTCTCTCTCAAAAAGCAGGAATTCCTGCAACTGCTGTTGGCTGAACAAATGCATTATTCCAGATTCCGATGAAGCAACCAACTCAATGAGCTTATCACAATGATCTAGAGAATCACCTGCTTCAGATAGAGCGATGGATGCCTGCATAGATCGTAGAATAGTTTCTGGCAGGCAGCATCTACGACAAAGCCCACGAATTATGTATGCAGCAGTGCTTTCTACTGAACCATGACCATCAGAATACCAAGCATCAAGCCGTGATATTTCAATTGAAACTCCAGGTTGAAATCGATTGAGTTCACCTTTGAACCCAGCAGCCATAATTGCAGCAAGAAGACCTCCATCATTGGCTTCATGAAGCCCCAAACCATCACCTTCTACTGCTAGGCAGAGGAGAGAAACTTGAATACAGCAAGGATCTTTAGATGAAACATTCACATCCACCTTCAATTGACGATGCAACACTTCCGTTTCACTAACAGTAGAGTACAATGCACTTGTCAAAGCTGTGCATGATGTTGCATC]
consensusID : consensus_10251#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence
[TTTTTTTTTAGTGAAAATAAAAGGCTGAGATCAATAGATATTGAGTTTGACAACCAGATAACCTTTTTACATTTGTTTTCAACTCTTCTGATGGAGCATGAACAACACAGTTACTTACAGCTGGTACTTTCTATTTCTTTCGTGAAGTGGATTACAAGTGATACCTAACCACACGGTGGGGTACGCCATGTTTGCAAACTAGATTTGGACAGCTGGTGGATACACCCATCACAGGTATACGCATCCTGCATGCACAAGTTAGCAAAATGTCACCTGAGCGAAATACCAAACTCGACAATGATGTGATATTGAGATCAATAACGAAGAAATAGAGATGAAATATACTGGTTTNGTACATAACTGCCGTGAG]
[-] EMBL BQ908078 [TTTTTTTTTAGTGAAAATAAAAGGCTGAGATCAATAGATATTGAGTTTGACAACCAGATAACCTTTTTACATTTGTTTTCAACTCTTCTGATGGAGCATGAACAACACAGTTACTTACAGCTGGTACTTTCTATTTCTTTCGTGAAGTGGATTACAAGTGATACCTAACCACACGGTGGGGTACGCCATGTTTGCAAACTAGATTTGGACAGCTGGTGGATACACCCATCACAGGTATACGCATCCTGCATGCACAAGTTAGCAAAATGTCACCTGAGCGAAATACCAAACTCGACAATGATGTGATATTGAGATCAATAACGAAGAAATAGAGATGAAATATACTGGTTTNGTACATAACTGCCGTGAG]
consensusID : consensus_10251#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 321 fasta sequence
[AAAACGCTGAGATCAATANGATATTGCGTTTGACAACCAGATAACCTTTTTACATTTGTTTTCAACTCTTCTGATGGAGCATGAACAACACAAGTTACTTACAGNTGGGACTTTCTATTTCTTTCGGGAATTGGNTTACAAAGNGATACCTAACCACACGGTGGGGNACGGCCTGTTTTCAAACTTGGTTTNGGCAACTTGGTGGGTACACCCATCAACAAGGTTTACACATCCTTTTANGCCNTCAGCAGGTAAACTCTTCTAACCTGCTTNTTACCTCAATGTTCCANTTTTANGATAGGTGGGACTTCTTCTNTCAAA]
[+] EMBL D42952 [AAAACGCTGAGATCAATANGATATTGCGTTTGACAACCAGATAACCTTTTTACATTTGTTTTCAACTCTTCTGATGGAGCATGAACAACACAAGTTACTTACAGNTGGGACTTTCTATTTCTTTCGGGAATTGGNTTACAAAGNGATACCTAACCACACGGTGGGGNACGGCCTGTTTTCAAACTTGGTTTNGGCAACTTGGTGGGTACACCCATCAACAAGGTTTACACATCCTTTTANGCCNTCAGCAGGTAAACTCTTCTAACCTGCTTNTTACCTCAATGTTCCANTTTTANGATAGGTGGGACTTCTTCTNTCAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10251#2 ------------------------------------------------------------
consensus_10251#3 ------------------------------------------------------------
consensus_10251#0 ------------------------------------------------------------
consensus_10251#1 AAAACACTTAGATGTGCAATTTCCCTATTCCCTGAAACATCATTCTCCTTTGGGCCATAC 60
consensus_10251#2 --------------------------------------TTTTTTTTTAGTGAAAATAAAA 22
consensus_10251#3 --------------------------------------------------------AAAA 4
consensus_10251#0 ---------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTGAAAATAAAA 45
consensus_10251#1 AACCACACATTTCCTAAATAAATAAGTAGTTTATGTTGCATGTTTCGAAAATGTAAAATA 120
** *
consensus_10251#2 GGCTGAGATCAATAG-A-TATTGAGTTTGACAACCAGATAACCTTTTTACATT-TGTTTT 79
consensus_10251#3 CGCTGAGATCAATANGA-TATTGCGTTTGACAACCAGATAACCTTTTTACATT-TGTTTT 62
consensus_10251#0 GGCTGAGATCAATAG-A-TATTGAGTTTGACAACCAGATAACCTTTTTACATT-TGTTTT 102
consensus_10251#1 TGCACAGACTAGTCTTACTGATTCCTCTGAGTACAGGAGAAAACGGTTAAATGGTCATTA 180
** *** * * * * * * *** ** ** ** *** ** * **
consensus_10251#2 CAACTCTTCTGATGGAGCATGAACAACACA-GTTACTTACAGCTGGTACTTTCTATT--T 136
consensus_10251#3 CAACTCTTCTGATGGAGCATGAACAACACAAGTTACTTACAGNTGGGACTTTCTATT--T 120
consensus_10251#0 CAACTCTTCTGATGGAGCATGAACAACACA-GTTACTTACAGCTGGTACTTTCTATT--T 159
consensus_10251#1 TTACAACCAAAATGTAACATCAACCTTTTA-GCCATCAGCAGGTAACTGCTCTAACTGCT 239
** *** * *** *** * * * *** * * * * *
consensus_10251#2 CTTTCGTGAAGTGGATTACAA-GTGATACCTAACCACACGGTGGGGTACGCCATGTTTGC 195
consensus_10251#3 CTTTCGGGAATTGGNTTACAAAGNGATACCTAACCACACGGTGGGGNACGGCCTGTTTTC 180
consensus_10251#0 CTTTCGTGAA-TGGATTACAA-GTGATACCTAACCACACGGTGGGGTACGCCATGTTTGC 217
consensus_10251#1 CTTCCTCAAGCTCCATTTTAGATAGGTAGCATTCTCTCTCAAAAAGCA-GGAATTCCTGC 298
*** * * * ** * * ** * * * * * * * *
consensus_10251#2 AAACTAGATT---TGGACAGCT-GGTGGATACACCCATCAC--AGGTATACGCATC---- 245
consensus_10251#3 AAACTTGGTT---TNGGCAACTTGGTGGGTACACCCATCAACAAGGTTTACACATC---- 233
consensus_10251#0 AAACTAGATT---TGGACAGCT-GGTGGATACACCCATCAC--AGGTATACACATC---- 267
consensus_10251#1 AACTGCTGTTGGCTGAACAAATGCATTATTCCAGATTCCGATGAAGCAACCAACTCAATG 358
** ** * ** * * * ** * * * * **
consensus_10251#2 --CTGCATGC-ACAAGTTAGCAAAATGTC-ACCTGAGCGAAA-TACCAAACTCGA-CAAT 299
consensus_10251#3 --CTTT------TANGCCNTCAGCAGGTA-AACTCTTCTAACCTGCTTNTTACCT-CAAT 283
consensus_10251#0 --CTTTTAGCCATCAGCAGGTAACTGCTCTAACTGCTCTTCCTCAAGCTCCATTT-TAGA 324
consensus_10251#1 AGCTTATCACAATGATCTAGAGAATCACCTGCTTCAGATAGAGCGATGGATGCCTGCATA 418
** * *
consensus_10251#2 GATGTGATATTGAGATCAATAACGAAGAAATAGAGATGAAATATACTGGTTTNGTACATA 359
consensus_10251#3 GTTCCANTTTTANGATAGGTG--GGACTTCTTCTNTCAAA-------------------- 321
consensus_10251#0 TAGGTAGCATTCTCTCTCAAAAAGCAGGAATTCCTGCAACTGCTGTTGGCTGAACAAATG 384
consensus_10251#1 GATCGTAGAATAGTTTCTGGCAGGCAGCATCTACGACAAAGCCCACGAATTATGTATGCA 478
* * * *
consensus_10251#2 ACTGCCGTGAG------------------------------------------------- 370
consensus_10251#3 ------------------------------------------------------------
consensus_10251#0 CATTATTCCAGATTCCGATGAAGCAACCAACTCAATGAGCTTATCACAATGATCTAGAGA 444
consensus_10251#1 GCAGTGCTTTCTACTGAACCATGACCATCAGAATACCAAGCATCAAGCCGTGATATTTCA 538
consensus_10251#2 ------------------------------------------------------------
consensus_10251#3 ------------------------------------------------------------
consensus_10251#0 ATCACCTGCTTCAGATAGAGCGATGGATGCCTGCATAGATCGTAGAATAGTTTCTGGCAG 504
consensus_10251#1 ATTGAAACTCCAGGTTGAAATCGATTGAGTTCACCTTTGAACCCAGCAGCCATAATTGCA 598
consensus_10251#2 ------------------------------------------------------------
consensus_10251#3 ------------------------------------------------------------
consensus_10251#0 GCAGCATCTACGACAAAGCCCACGAATTATGTATGCAGCAGTGCTTTCTACTGAACCATG 564
consensus_10251#1 GCAAGAAGACCTCCATCATTGGCTTCATGAAGCCCCAAACCATCACCTTCTACTGCTAGG 658
consensus_10251#2 ------------------------------------------------------------
consensus_10251#3 ------------------------------------------------------------
consensus_10251#0 ACCATCAGAATACCAAGCATCAAGCCGTGATATTTCAATTGAAACTCCAGGTTGAAATCG 624
consensus_10251#1 CAGAGGAGAGAAACTTGAATACAGCAAGGATCTTTAGATGAAACATTCACATCCACCTTC 718
consensus_10251#2 ------------------------------------------------------------
consensus_10251#3 ------------------------------------------------------------
consensus_10251#0 ATTGAGTTCACCTTTGAACCCAGCAGCCATAATTGCAGCAAGAAGACCTCCATCATTGGC 684
consensus_10251#1 AATTGACGATGCAACACTTCCGTTTCACTAACAGTAGAGTACAATGCACTTGTCAAAGCT 778
consensus_10251#2 ------------------------------------------------------------
consensus_10251#3 ------------------------------------------------------------
consensus_10251#0 TTCATGAAGCCCCAAACCATCACCTTCTACTGCTAGGCAGAGGAGAGAAACTTGAATACA 744
consensus_10251#1 GTGCATGATGTTGCATC------------------------------------------- 795
consensus_10251#2 ------------------------------------------------------------
consensus_10251#3 ------------------------------------------------------------
consensus_10251#0 GCAAGGATCTTTAGATGAAACATTCACATCCACCTTCAATTGACGATGCAACACTTCCGT 804
consensus_10251#1 ------------------------------------------------------------
consensus_10251#2 -------------------------------------------
consensus_10251#3 -------------------------------------------
consensus_10251#0 TTCACTAACAGTAGAGTACAATGCACTTGTCAAAGCTGTGCAT 847
consensus_10251#1 -------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||