These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10251#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 847 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTGAAAATAAAAGGCTGAGATCAATAG-ATATTGAGTTTGACAACCA-GATAAC-CTTTTTACATTTGTTTTCAACTCTTCTGATGGAGCATGAACAACACAGTTACTTACAGCTGGTACTTTCTATTTCTTTCGTGAATGGATTACAAGTGATACCTAACCACACGGTGGGGTACGCCATGTTTGCAAACTAGATTTGGACAGCTGGTGGATACACCCATCACAGGTATACACATCCTTTTAGCCATCAGCAGGTAACTGCTCTAACTGCTCTTCCTCAAGCTCCATTTTAGATAGGTAGCATTCTCTCTCAAAAAGCAGGAATTCCTGCAACTGCTGTTGGCTGAACAAATGCATTATTCCAGATTCCGATGAAGCAACCAACTCAATGAGCTTATCACAATGATCTAGAGAATCACCTGCTTCAGATAGAGCGATGGATGCCTGCATAGATCGTAGAATAGTTTCTGGCAGGCAGCATCTACGACAAAGCCCACGAATTATGTATGCAGCAGTGCTTTCTACTGAACCATGACCATCAGAATACCAAGCATCAAGCCGTGATATTTCAATTGAAACTCCAGGTT-GAAATCGATTGAGTTCACCTTTGAACCCAGCAGCCATAATTGCAGCAAGAAGACCTCCATCATTGGCTTCATGAAGCCCCAAACCATCACCTTCTACTGCTAGGCAGAGGAGAGAAACTTGAATACAGCAAGGATCTTTAGATGAAACATTCACATCCACCTTCAATTGACGATGCAACACTTCCGTTTCACTAACAGTAGAGTACAATGCACTTGTCAAAGCTGTGCAT] [-] EMBL AU092203 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTGAAAATAAAAGGCTGAGATCAATAG ATATTGAGTTTGACAACCA GATAAC CTTTTTACATTTGTTTTCAACTCTTCTGATGGAGCATGAACAACACAGTTACTTACAGCTGGNACTTTCTATTTCTTTCGTGAATGGATTACAAGTGATACCTAACCACACGGNGGGGNACGCCATGTTTGCAAACTAGATTTGGACAGCTGGTGGATACACCCATCACAGGNATACACATCCTTTTAGCCATCAGCAGGNAACTGCTCTAACTGCTCTTCCTCAAGCTCCATTTTAGATAGGNAGCATTCTCTCTCAAAAAGCAGGAATTCCTGCAACTGCTGTTGGCTGAACAAATGCATTATTCCAGATTCCGATGAAGCAACCAACTCAATGAGCTTATCACAATGATCTAGAGAATCACCTGCTTCAGATAGAGCGATGGATGCCTGCATAGATCGTAGAATAGTTTCTGGCAGGNAGCATCTACGACAAAGCCCACGAATTATGTATGCAGCAGTGCTTTCTACTGAACCATGACCATCAGAATACCAAGCATCAAGCCGNGATATTTCAATTGAAACTCCAGGTTNGAAATCGATTGAGTTCA ] [+] EMBL CB634141 [ cccTTTTTTTTTTTTAGTGAAAATAAAAGGCTGAGATCAATAC ATATTGAGTTTGACAACCATGATAACNCTTTTTACATTTGTTTTCAACTCTTCTGATGGAGCATGAACAACTCCCTTACTTACAGCTGGTACTTTCTATTTCTTTCGTGAATGGATTACAAGTGATACCTAACCACACGGGGGGGTACGCCATGTTTGCAAACTAGATTTGGACAGCTGGTGGATACACCCATCACAGGTATACACATCCTTTTAGCCATCAGCAGGTAACTGCTCTAACTGCTCTTCCTCAAGCTCCATTTTAGATAGGTAGCATTCTCTCTCAAAAAGCAGGAATTCCTGCAACTGCTGTTGGCTGAACAAATGCATTATTCCAGATTCCGATGAAGCAACCAACTCAATGAGCTTATCACAATGATCTAGAGAATCACCTGCTTCAGATAGAGCGATGGATGCCTGCATAGATCGTAGAATAGTTTCTGGCAGGCAGCATCTACGACAAAGCCCACGAATTATGTATGCAGCAGTGCTTTCTACTGAACCATGACCATCAGAATACCAAGCATCAAGCCGTGATATTTCAATTGAAACTCCAGGTT GAAATCGATTGAGTTCACCTTTGAACCCAGCAGCCATAATTGCAGCAAGAAGACCTCCATCATTGGCTTCATGAAGCCCCAAACCATCACCTTCTACTGCTAGGCAGAGGAGAGAAACTTGAATACAGCAAGGATCTTTAGATG ] [+] EMBL CB632735 [ tccttaaTTTTTTAGTGAAAATAAAAGGCTGAGATCAATAGCACATTGAGTTTGACAACCA GATAAC CTTTTTACATTTGTTTTCAACTCTTCTGATGGAGCATGAACAACACAGTTACTTACAGCTGGTACTTTCTATTTCTTTCGTGAATGGATTACAAGTGATACCTAACCACACGGTGGGGTACGCCATGTTTGCAAACTAGATTTGGACAGCTGGTGGATACACCCATCACAGGTATACACATCCTTTTAGCCATCAGCAGGTAACTGCTCTAACTGCTCTTCCTCAAGCTCCATTTTAGATAGGTAGCATTCTCTCTCAAAAAGCAGGAATTCCTGCAACTGCTGTTGGCTGAACAAATGCATTATTCCAGATTCCGATGAAGCAACCAACTCAATGAGCTTATCACAATGATCTAGAGAATCACCTGCTTCAGATAGAGCGATGGATGCCTGCATAGATCGTAGAATAGTTTCTGGCAGGCAGCATCTACGACAAAGCCCACGAATTATGTATGCAGCAGTGCTTTCTACTGAACCATGACCATCAGAATACCAAGCATCAAGCCGTGATATTTCAATTGAAACTCCAGGTT GAAATCGATTGAGTTCACCTTTGAACCCAGCAGCCATAATTGCAGCAAGAAGACCTCCATCATTGGCTTCATGAAGCCCCAAACCATCACCTTCTACTGCTAGGCAGAGGAGAGAAACTTGAATACAGCAAGGATCTTTAGATGAAACATTCACATCCACCTTCAATTGACGATGCAACACTTCCGTTTCACTAACAGTAGAGTACAATGCACTTGTCAAAGCTGTGCAT] [-] EMBL AU069249 [ TTTTTAGTGAAAATAAAAGGCTGAGATCAATAG ATATTGAGTTTGACAACCA GATAAC CTTTTTACATTTGTTTTCAACTCTTCTGATGGAGCATGAACAACACAGTTACTTACAGCTGGTACTTTCTATTTCTTTCGTGAATGGATTACAAGTGATACCTAACCACACGGTGGGGTACGCCATGTTTGCAAACTAGATTTGGACAGCTGGTGGATACACCCATCACAGGTATACACATCCTTTTAGCCATCAGCAGGTAACTGCTCTAACTGCTCT ] consensusID : consensus_10251#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 795 fasta sequence [AAAACACTTAGATGTGCAATTTCCCTATTCCCTGAAACATCATTCTCCTTTGGGCCATACAACCACACATTTCCTAAATAAATAAGTAGTTTATGTTGCATGTTTCGAAAATGTAAAATATGCACAGACTAGTCTTACTGATTCCTCTGAGTACAGGAGAAAACGGTTAAATGGTCATTATTACAACCAAAATGTAACATCAACCTTTTAGCCATCAGCAGGTAACTGCTCTAACTGCTCTTCCTCAAGCTCCATTTTAGATAGGTAGCATTCTCTCTCAAAAAGCAGGAATTCCTGCAACTGCTGTTGGCTGAACAAATGCATTATTCCAGATTCCGATGAAGCAACCAACTCAATGAGCTTATCACAATGATCTAGAGAATCACCTGCTTCAGATAGAGCGATGGATGCCTGCATAGATCGTAGAATAGTTTCTGGCAGGCAGCATCTACGACAAAGCCCACGAATTATGTATGCAGCAGTGCTTTCTACTGAACCATGACCATCAGAATACCAAGCATCAAGCCGTGATATTTCAATTGAAACTCCAGGTTGAAATCGATTGAGTTCACCTTTGAACCCAGCAGCCATAATTGCAGCAAGAAGACCTCCATCATTGGCTTCATGAAGCCCCAAACCATCACCTTCTACTGCTAGGCAGAGGAGAGAAACTTGAATACAGCAAGGATCTTTAGATGAAACATTCACATCCACCTTCAATTGACGATGCAACACTTCCGTTTCACTAACAGTAGAGTACAATGCACTTGTCAAAGCTGTGCATGATGTTGCATC] [+] EMBL CB665822 [AAAACACTTAGATGTGCAATTTCCCTATTCCCTGAAACATCATTCTCCTTTGGGCCATACAACCACACATTTCCTAAATAAATAAGTAGTTTATGTTGCATGTTTCGAAAATGTAAAATATGCACAGACTAGTCTTACTGATTCCTCTGAGTACAGGAGAAAACGGTTAAATGGTCATTATTACAACCAAAATGTAACATCAACCTTTTAGCCATCAGCAGGTAACTGCTCTAACTGCTCTTCCTCAAGCTCCATTTTAGATAGGTAGCATTCTCTCTCAAAAAGCAGGAATTCCTGCAACTGCTGTTGGCTGAACAAATGCATTATTCCAGATTCCGATGAAGCAACCAACTCAATGAGCTTATCACAATGATCTAGAGAATCACCTGCTTCAGATAGAGCGATGGATGCCTGCATAGATCGTAGAATAGTTTCTGGCAGGCAGCATCTACGACAAAGCCCACGAATTATGTATGCAGCAGTGCTTTCTACTGAACCATGACCATCAGAATACCAAGCATCAAGCCGTGATATTTCAATTGAAACTCCAGGTTGAAATCGATTGAGTTCACCTTTGAACCCAGCAGCCATAATTGCAGCAAGAAGACCTCCATCATTGGCTTCATGAAGCCCCAAACCATCACCTTCTACTGCTAGGCAGAGGAGAGAAACTTGAATACAGCAAGGATCTTTAGATGAAACATTCACATCCACCTTCAATTGACGATGCAACACTTCCGTTTCACTAACAGTAGAGTACAATGCACTTGTCAAAGCTGTGCATGATGTTGCATC] consensusID : consensus_10251#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence [TTTTTTTTTAGTGAAAATAAAAGGCTGAGATCAATAGATATTGAGTTTGACAACCAGATAACCTTTTTACATTTGTTTTCAACTCTTCTGATGGAGCATGAACAACACAGTTACTTACAGCTGGTACTTTCTATTTCTTTCGTGAAGTGGATTACAAGTGATACCTAACCACACGGTGGGGTACGCCATGTTTGCAAACTAGATTTGGACAGCTGGTGGATACACCCATCACAGGTATACGCATCCTGCATGCACAAGTTAGCAAAATGTCACCTGAGCGAAATACCAAACTCGACAATGATGTGATATTGAGATCAATAACGAAGAAATAGAGATGAAATATACTGGTTTNGTACATAACTGCCGTGAG] [-] EMBL BQ908078 [TTTTTTTTTAGTGAAAATAAAAGGCTGAGATCAATAGATATTGAGTTTGACAACCAGATAACCTTTTTACATTTGTTTTCAACTCTTCTGATGGAGCATGAACAACACAGTTACTTACAGCTGGTACTTTCTATTTCTTTCGTGAAGTGGATTACAAGTGATACCTAACCACACGGTGGGGTACGCCATGTTTGCAAACTAGATTTGGACAGCTGGTGGATACACCCATCACAGGTATACGCATCCTGCATGCACAAGTTAGCAAAATGTCACCTGAGCGAAATACCAAACTCGACAATGATGTGATATTGAGATCAATAACGAAGAAATAGAGATGAAATATACTGGTTTNGTACATAACTGCCGTGAG] consensusID : consensus_10251#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 321 fasta sequence [AAAACGCTGAGATCAATANGATATTGCGTTTGACAACCAGATAACCTTTTTACATTTGTTTTCAACTCTTCTGATGGAGCATGAACAACACAAGTTACTTACAGNTGGGACTTTCTATTTCTTTCGGGAATTGGNTTACAAAGNGATACCTAACCACACGGTGGGGNACGGCCTGTTTTCAAACTTGGTTTNGGCAACTTGGTGGGTACACCCATCAACAAGGTTTACACATCCTTTTANGCCNTCAGCAGGTAAACTCTTCTAACCTGCTTNTTACCTCAATGTTCCANTTTTANGATAGGTGGGACTTCTTCTNTCAAA] [+] EMBL D42952 [AAAACGCTGAGATCAATANGATATTGCGTTTGACAACCAGATAACCTTTTTACATTTGTTTTCAACTCTTCTGATGGAGCATGAACAACACAAGTTACTTACAGNTGGGACTTTCTATTTCTTTCGGGAATTGGNTTACAAAGNGATACCTAACCACACGGTGGGGNACGGCCTGTTTTCAAACTTGGTTTNGGCAACTTGGTGGGTACACCCATCAACAAGGTTTACACATCCTTTTANGCCNTCAGCAGGTAAACTCTTCTAACCTGCTTNTTACCTCAATGTTCCANTTTTANGATAGGTGGGACTTCTTCTNTCAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10251#2 ------------------------------------------------------------ consensus_10251#3 ------------------------------------------------------------ consensus_10251#0 ------------------------------------------------------------ consensus_10251#1 AAAACACTTAGATGTGCAATTTCCCTATTCCCTGAAACATCATTCTCCTTTGGGCCATAC 60 consensus_10251#2 --------------------------------------TTTTTTTTTAGTGAAAATAAAA 22 consensus_10251#3 --------------------------------------------------------AAAA 4 consensus_10251#0 ---------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTGAAAATAAAA 45 consensus_10251#1 AACCACACATTTCCTAAATAAATAAGTAGTTTATGTTGCATGTTTCGAAAATGTAAAATA 120 ** * consensus_10251#2 GGCTGAGATCAATAG-A-TATTGAGTTTGACAACCAGATAACCTTTTTACATT-TGTTTT 79 consensus_10251#3 CGCTGAGATCAATANGA-TATTGCGTTTGACAACCAGATAACCTTTTTACATT-TGTTTT 62 consensus_10251#0 GGCTGAGATCAATAG-A-TATTGAGTTTGACAACCAGATAACCTTTTTACATT-TGTTTT 102 consensus_10251#1 TGCACAGACTAGTCTTACTGATTCCTCTGAGTACAGGAGAAAACGGTTAAATGGTCATTA 180 ** *** * * * * * * *** ** ** ** *** ** * ** consensus_10251#2 CAACTCTTCTGATGGAGCATGAACAACACA-GTTACTTACAGCTGGTACTTTCTATT--T 136 consensus_10251#3 CAACTCTTCTGATGGAGCATGAACAACACAAGTTACTTACAGNTGGGACTTTCTATT--T 120 consensus_10251#0 CAACTCTTCTGATGGAGCATGAACAACACA-GTTACTTACAGCTGGTACTTTCTATT--T 159 consensus_10251#1 TTACAACCAAAATGTAACATCAACCTTTTA-GCCATCAGCAGGTAACTGCTCTAACTGCT 239 ** *** * *** *** * * * *** * * * * * consensus_10251#2 CTTTCGTGAAGTGGATTACAA-GTGATACCTAACCACACGGTGGGGTACGCCATGTTTGC 195 consensus_10251#3 CTTTCGGGAATTGGNTTACAAAGNGATACCTAACCACACGGTGGGGNACGGCCTGTTTTC 180 consensus_10251#0 CTTTCGTGAA-TGGATTACAA-GTGATACCTAACCACACGGTGGGGTACGCCATGTTTGC 217 consensus_10251#1 CTTCCTCAAGCTCCATTTTAGATAGGTAGCATTCTCTCTCAAAAAGCA-GGAATTCCTGC 298 *** * * * ** * * ** * * * * * * * * consensus_10251#2 AAACTAGATT---TGGACAGCT-GGTGGATACACCCATCAC--AGGTATACGCATC---- 245 consensus_10251#3 AAACTTGGTT---TNGGCAACTTGGTGGGTACACCCATCAACAAGGTTTACACATC---- 233 consensus_10251#0 AAACTAGATT---TGGACAGCT-GGTGGATACACCCATCAC--AGGTATACACATC---- 267 consensus_10251#1 AACTGCTGTTGGCTGAACAAATGCATTATTCCAGATTCCGATGAAGCAACCAACTCAATG 358 ** ** * ** * * * ** * * * * ** consensus_10251#2 --CTGCATGC-ACAAGTTAGCAAAATGTC-ACCTGAGCGAAA-TACCAAACTCGA-CAAT 299 consensus_10251#3 --CTTT------TANGCCNTCAGCAGGTA-AACTCTTCTAACCTGCTTNTTACCT-CAAT 283 consensus_10251#0 --CTTTTAGCCATCAGCAGGTAACTGCTCTAACTGCTCTTCCTCAAGCTCCATTT-TAGA 324 consensus_10251#1 AGCTTATCACAATGATCTAGAGAATCACCTGCTTCAGATAGAGCGATGGATGCCTGCATA 418 ** * * consensus_10251#2 GATGTGATATTGAGATCAATAACGAAGAAATAGAGATGAAATATACTGGTTTNGTACATA 359 consensus_10251#3 GTTCCANTTTTANGATAGGTG--GGACTTCTTCTNTCAAA-------------------- 321 consensus_10251#0 TAGGTAGCATTCTCTCTCAAAAAGCAGGAATTCCTGCAACTGCTGTTGGCTGAACAAATG 384 consensus_10251#1 GATCGTAGAATAGTTTCTGGCAGGCAGCATCTACGACAAAGCCCACGAATTATGTATGCA 478 * * * * consensus_10251#2 ACTGCCGTGAG------------------------------------------------- 370 consensus_10251#3 ------------------------------------------------------------ consensus_10251#0 CATTATTCCAGATTCCGATGAAGCAACCAACTCAATGAGCTTATCACAATGATCTAGAGA 444 consensus_10251#1 GCAGTGCTTTCTACTGAACCATGACCATCAGAATACCAAGCATCAAGCCGTGATATTTCA 538 consensus_10251#2 ------------------------------------------------------------ consensus_10251#3 ------------------------------------------------------------ consensus_10251#0 ATCACCTGCTTCAGATAGAGCGATGGATGCCTGCATAGATCGTAGAATAGTTTCTGGCAG 504 consensus_10251#1 ATTGAAACTCCAGGTTGAAATCGATTGAGTTCACCTTTGAACCCAGCAGCCATAATTGCA 598 consensus_10251#2 ------------------------------------------------------------ consensus_10251#3 ------------------------------------------------------------ consensus_10251#0 GCAGCATCTACGACAAAGCCCACGAATTATGTATGCAGCAGTGCTTTCTACTGAACCATG 564 consensus_10251#1 GCAAGAAGACCTCCATCATTGGCTTCATGAAGCCCCAAACCATCACCTTCTACTGCTAGG 658 consensus_10251#2 ------------------------------------------------------------ consensus_10251#3 ------------------------------------------------------------ consensus_10251#0 ACCATCAGAATACCAAGCATCAAGCCGTGATATTTCAATTGAAACTCCAGGTTGAAATCG 624 consensus_10251#1 CAGAGGAGAGAAACTTGAATACAGCAAGGATCTTTAGATGAAACATTCACATCCACCTTC 718 consensus_10251#2 ------------------------------------------------------------ consensus_10251#3 ------------------------------------------------------------ consensus_10251#0 ATTGAGTTCACCTTTGAACCCAGCAGCCATAATTGCAGCAAGAAGACCTCCATCATTGGC 684 consensus_10251#1 AATTGACGATGCAACACTTCCGTTTCACTAACAGTAGAGTACAATGCACTTGTCAAAGCT 778 consensus_10251#2 ------------------------------------------------------------ consensus_10251#3 ------------------------------------------------------------ consensus_10251#0 TTCATGAAGCCCCAAACCATCACCTTCTACTGCTAGGCAGAGGAGAGAAACTTGAATACA 744 consensus_10251#1 GTGCATGATGTTGCATC------------------------------------------- 795 consensus_10251#2 ------------------------------------------------------------ consensus_10251#3 ------------------------------------------------------------ consensus_10251#0 GCAAGGATCTTTAGATGAAACATTCACATCCACCTTCAATTGACGATGCAACACTTCCGT 804 consensus_10251#1 ------------------------------------------------------------ consensus_10251#2 ------------------------------------------- consensus_10251#3 ------------------------------------------- consensus_10251#0 TTCACTAACAGTAGAGTACAATGCACTTGTCAAAGCTGTGCAT 847 consensus_10251#1 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||