These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10263#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1299 fasta sequence [GGTGGCACGCGTGAGAGTGAGGAGCTCGCGAACTCCAAAACCCTAACCCTCTCGGAGCTTCACATCGGCGGCGGCGGCGGCGATGGCGGAGGGTGGCGGCGGAGGAGGAGGGTCGGCGGCGTCGGCGGCGCTGAAGGATCAGGGGAACGAGCAGTTCAAGGCGGGGAACTACCTCAAGGCCGCCGCGCTCTACACCCAGGCCATCAAGCTCGACCCCGACAACCCCACCCTCTATAGCAATCGGGCTGCTGCATTTCTCCATCTAGTTAAGCTTAATAAGGCACTCGCTGATGCTGATACGACAATAAAACTCAAGCCACAATGGGAAAAGGGTCATTTCAGGAAAGGGTGTGTTTTAGAGTCGATGGAACACTATGAGGAGGCAATATCTTCTTTTCAGATAGCTTTGCAACACAATCCACAAAATACAGAAGTTTCAAGAAAAATTAAGAGGCTTACTCAGTTGGCAAGGGAAAAGAAGCGGGCTCTTGATGTGGAGAACATGCGTTCTAATGTTGATGTTGCAAAGAACTTGGATTCACTGAAAACCGAGCTGGCTGGAAAATATGGAGATGCCGAACTGGGGCAAAGTATCTTCACTTTTGTTGTTAATGTGATTGAATCAGCTATAAAGGTCTGGCATGACACCGGAAAAGTAGATGCAAGAGTTAATTTTCTTCTTGATGACCAGAAGACTGATACTGAAAAACATGCCCCAGTGGTTAACATTGACAAGGCCTTTGACTCACCCCA-CACTCACAGCAGTTGCTTCACATTTTTGCGGCAATATTCCGAGGAGTCTTTCTCAAAGGCTGCTTGTATGGTAGCACCTAAGAGCGCCATCTCGTACCCTCAGGTCTGGAAAGGACAGGGATCAAGAAAATGGAAGCTTGACCAGAGTGATGGTTTCTTTGTGCAATTTGAGTCA-CCAATTCTGC-GGAAGATAT-GGTTTGTCCCTAGCACAACTGAAAAGGGACGAGTATTATG-CAGGAGTCCTGAGCTCCTGGACATTAGCATCCACGAAGTGCTTCCCCGTATATTCAAAGAAACGGCTTGAATAAACAACAAATGGACAGTGAATGGCTCCCAAATTCTTCCCCTGTTGTGGTCATATTCTTTCCTAGCTTACAGTTGCAAAGGGGATATTTTTCATAGCGTGGTGAGAGCTTAGATTTGCATGCCAGATTTTGTAAGCTGTTGATCTGTATTGTACACCGAGGCACACAAATTTTGCTGATCTGGTTTTTTAATTATATATGCCTTAAGTGGTGCAATTTCCATTGTAAAAAAAAAAAAAAA] [+] EMBL AK073324 [GGTGGCACGCGTGAGAGTGAGGAGCTCGCGAACTCCAAAACCCTAACCCTCTCGGAGCTTCACATCGGCGGCGGCGGCGGCGATGGCGGAGGGTGGCGGCGGAGGAGGAGGGTCGGCGGCGTCGGCGGCGCTGAAGGATCAGGGGAACGAGCAGTTCAAGGCGGGGAACTACCTCAAGGCCGCCGCGCTCTACACCCAGGCCATCAAGCTCGACCCCGACAACCCCACCCTCTATAGCAATCGGGCTGCTGCATTTCTCCATCTAGTTAAGCTTAATAAGGCACTCGCTGATGCTGATACGACAATAAAACTCAAGCCACAATGGGAAAAGGGTCATTTCAGGAAAGGGTGTGTTTTAGAGTCGATGGAACACTATGAGGAGGCAATATCTTCTTTTCAGATAGCTTTGCAACACAATCCACAAAATACAGAAGTTTCAAGAAAAATTAAGAGGCTTACTCAGTTGGCAAGGGAAAAGAAGCGGGCTCTTGATGTGGAGAACATGCGTTCTAATGTTGATGTTGCAAAGAACTTGGATTCACTGAAAACCGAGCTGGCTGGAAAATATGGAGATGCCGAACTGGGGCAAAGTATCTTCACTTTTGTTGTTAATGTGATTGAATCAGCTATAAAGGTCTGGCATGACACCGGAAAAGTAGATGCAAGAGTTAATTTTCTTCTTGATGACCAGAAGACTGATACTGAAAAACATGCCCCAGTGGTTAACATTGACAAGGCCTTTGACTCACCCCA CACTCACAGCAGTTGCTTCACATTTTTGCGGCAATATTCCGAGGAGTCTTTCTCAAAGGCTGCTTGTATGGTAGCACCTAAGAGCGCCATCTCGTACCCTCAGGTCTGGAAAGGACAGGGATCAAGAAAATGGAAGCTTGACCAGAGTGATGGTTTCTTTGTGCAATTTGAGTCA CCAATTCTGC GGAAGATAT GGTTTGTCCCTAGCACAACTGAAAAGGGACGAGTATTATG CAGGAGTCCTGAGCTCCTGGACATTAGCATCCACGAAGTGCTTCCCCGTATATTCAAAGAAACGGCTTGAATAAACAACAAATGGACAGTGAATGGCTCCCAAATTCTTCCCCTGTTGTGGTCATATTCTTTCCTAGCTTACAGTTGCAAAGGGGATATTTTTCATAGCGTGGTGAGAGCTTAGATTTGCATGCCAGATTTTGTAAGCTGTTGATCTGTATTGTACACCGAGGCACACAAATTTTGCTGATCTGGTTTTTTAATTATATATGCCTTAAGTGGTGCAA ] [+] EMBL AU069013 [ AGCTTCACATCGGCGGCGGCGGCGGCGATNGCNGAGGGTGGCGGCGGAGGAGGAGGGTCGGCGGCGTCGGCGGCGCTGAAGGATCAGGGGAACGAGCAGTTCAAGGCGGGGAACTACCTCAAGGCCGCCGCGCTCTACACCCAGGCCATCAAGCTCGACCCCGACAACCCCACCCTCTATAGCAATCGGGCTGCTGCATTTCTCCATCTAGTTAAGCTTAATAAGGCACTCGCTGATGCTGATACGACAATAAAACTCAAGCCACAATGGGAAAAGGGTCATTTCAGGAAAGGGTGTGTTTTAGAGTCGATGGAACACTATGAGGAGGCAATATCTTCTTTTCAGATAGCTTTGCAACACAATCCACAAAATACAGAAGTTTCAAGAAAAATTAAGAGGCTTACT ] [+] EMBL C74850 [ CGAACTGGGGCAAAGTATCTTCACTTTTGTTGTTAATGTGATTGAATCAGCTATAAAGGTCTGGCATGACACCGGAAAAGTAGATGCAAGAGTTAATTTTCTTCTTGATGACCAGAAGACTGATACTGAAAAACATGCCCCAGTGGTTAACATTGACAAGGCCTTTGACTCACCCCA CACTCACAGCAGTTGCTTCACATTTTTGCGGCAATATTCCGAGGAGTCTTTCTCAAAGGCTGCTTGTATGGTAGCACCTAAGAGCGCCATCTCGTACCCTCAGGTCTGGAAAGGACAGGGATCAAGAAAATGGNAGCTTGACCAGAGTGATGGTTTCTTTGTGCAATTTGAGTCACCCAATTCTGCGGGAAGATATGGGTTTGTCCCTAGCACAACTGAAAAGGGACGAGTATTANGCCAGGAGTCCTGAGCT ] [-] EMBL CA762006 [ AAGGTCTGGCATGACACCGGAAAAGTAGATGCAAGAGTTAATNTTCTTCTTGATGACCAGAAGACTGATACTGAAAAACATGCCCCAGTGGTTAACATTGACAAGGCCTTTGACTCACCCCANCACTCACAGCAGTTGCTTCACATTTTTGCGGCAATATTCCGAGGAGTCTTTCTCAAAGGCTGCTTGTATGGTAGCACCTAAGAGCGCCATCTCGTACCCTCAGGTCTGGAAAGGACAGGGATCAAGAAAGTGGAAGCTTGACCAGAGTGATGGTTTCTTTGTGCAATTTGAGTCA CCAATTTTGC GGAAGATAT GGTTTGTCCCTAGCACAACTGAAAAGGGACGAGTATTATG CAGGAGTCCTGAGCTCCTGGACATTAGCATCCACGAAGTGCTTCCCCGTATATTCAAAGAAACGGCTTGAATAAACAACAAATGGACAGTGAATGGCTCCCAAATTCTTCCCCTGTTGTGGTCATATTCTTTCCTAGCTTACAGTTGCAAAGGGGATATTTTTCATAGCGTGGTGAGAGCTTAGATTTGCATGCCAGATTTTGTAAGCTGTTGATCTGTATTGTACACCGAGGCACACAAATTTTGCTGATCTGGTTTTTTAATTATATATGCCTTAAGTGGTGCAATTTCCATTGTAAAAAAAAAAAAAAA] [+] EMBL CA305755 [ TCTGGAAAGGACAGGGATCAAGAAAATGGAAGCTTGACCAGAGTGATGGTTTCTTTGTGCAATTTGAGTCA CCAATTCTGC GGAAGATAT GGTTTGTCCCTAGCACAACTGAAAAGGGACGAGTATTATG CAGGAGTCCTGAGCTCCTGGACATTAGCATCCACGAAGTGCTTCCCCGTATATTCAAAGAAACGGCTTGAATAAACAACAAATGGACAGTGAATGGCTCCCAAATTCTTCCCCTGTTGTGGTCATATTCTTTCCTAGCTTACAGTTGCAAAGGGGATATTTTTCATAGCGTGGTGAGAGCTTAGATTTGCATGCCAGATTTTGTAAGCTGTTGATCTGTATTGTA ] consensusID : consensus_10263#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 773 fasta sequence [ATCTAGTTAAGCTTAATAAGGCACTCGCTGATCCTGATACGACAATAAAACTCAAGCCACAATGGGAAAAGGGTCATTTCAGGAAAGGGTGTGTTTTAGAGTCGATGGAACACTATGAGGAGGTGAGAGTAAAGGACAATTCCTTGCTTTTTCTCAACAGGGAGAAGGATAATTATCTCTTTTTTATTTTCTGTTATGTAAGCTTTAGCCAAGCCTTCCGTATTTGGCAAGCTGAGAAAATTGTGGTAAGAAATACCCTAGTTTGGAAGTGCACATATCACTTGCAATTATCAAAAGTAAAGTTCTGAAATCAGTTGATGCTGAATACATTATAGTGCAATTGCATTAAGGGAAACCTTAAATCTGTAAGATAAATTTGAATTTTATTCATTTTACCATGTTATATCATAACATTGGTCTTTACAATTGAACAAAGTTTTTCCTTCAATCATGTTAACATGTGTTCATGTCTATTCGGGGGTTTTATTTTTGTGCTTGAGCAGTGGCCCTCTTGCTGCTATTTTCATATGGCCACATGCAAAGATTGGATGTTTGGCTGAAGTACTTAAACTATTCATCAACTTCTCTTTCATGAGATCAAACTCTTAAAATATCAGTAGCATTGATTGTACATTATCAAGCTATTCAAAATATTAGCATTGATTCTGTATTAGCTATTTTCTGGTGCAGGCAATATCTTCTTTTCAGATAGCTTTGCAACACAATCCACAAAATACAGAAGTTTCAAGAAAAATTAAGAGGCTTACTCAGTT] [+] EMBL CB000357 [ATCTAGTTAAGCTTAATAAGGCACTCGCTGATCCTGATACGACAATAAAACTCAAGCCACAATGGGAAAAGGGTCATTTCAGGAAAGGGTGTGTTTTAGAGTCGATGGAACACTATGAGGAGGTGAGAGTAAAGGACAATTCCTTGCTTTTTCTCAACAGGGAGAAGGATAATTATCTCTTTTTTATTTTCTGTTATGTAAGCTTTAGCCAAGCCTTCCGTATTTGGCAAGCTGAGAAAATTGTGGTAAGAAATACCCTAGTTTGGAAGTGCACATATCACTTGCAATTATCAAAAGTAAAGTTCTGAAATCAGTTGATGCTGAATACATTATAGTGCAATTGCATTAAGGGAAACCTTAAATCTGTAAGATAAATTTGAATTTTATTCATTTTACCATGTTATATCATAACATTGGTCTTTACAATTGAACAAAGTTTTTCCTTCAATCATGTTAACATGTGTTCATGTCTATTCGGGGGTTTTATTTTTGTGCTTGAGCAGTGGCCCTCTTGCTGCTATTTTCATATGGCCACATGCAAAGATTGGATGTTTGGCTGAAGTACTTAAACTATTCATCAACTTCTCTTTCATGAGATCAAACTCTTAAAATATCAGTAGCATTGATTGTACATTATCAAGCTATTCAAAATATTAGCATTGATTCTGTATTAGCTATTTTCTGGTGCAGGCAATATCTTCTTTTCAGATAGCTTTGCAACACAATCCACAAAATACAGAAGTTTCAAGAAAAATTAAGAGGCTTACTCAGTT] [+] EMBL CA998878 [ TCTAGTTAAGCTTAATAAGGCACTCGCTGATGCTGATACGACAATAAAACTCAAGCCACAATGGGAAAAGGGTCATTTCAGGAAAGGGTGTGTTTTAGAGTCGATGGAACACTATGAGGAGGTGAGAGTAAAGGACAATTCCTTGCTTTTTCTCAACAGGGAGAAGGATAATTATCTCTTTTTTATTTTCTGTTATGTAAGCTTTAGCCAAGCCTTCCGTATTTGGCAAGCTGAGAAAATTGTGGTAAGAAATACCCTAGTTTGGAAGTGCACATATCACTTGCAATTATCAAAAGTAAAGTTCTGAAATCAGTTGATGCTGAATACATTATAGTGCAATTGCATTAAGGGAAACCTTAAATCTGTAAGATAAATTTGAATTTTATTCATTTTACCATGTTATATCATAACATTGGTCTTTACAATTGAACAAAGTTTTTCCTTCAATCATGTTAACATGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10263#0 GGTGGCACGCGTGAGAGTGAGGAGCTCGCGAACTCCAAAACCCTAACCCTCTCGGAGCTT 60 consensus_10263#1 ------------------------------------------------------------ consensus_10263#0 CACATCGGCGGCGGCGGCGGCGATGGCGGAGGGTGGCGGCGGAGGAGGAGGGTCGGCGGC 120 consensus_10263#1 ------------------------------------------------------------ consensus_10263#0 GTCGGCGGCGCTGAAGGATCAGGGGAACGAGCAGTTCAAGGCGGGGAACTACCTCAAGGC 180 consensus_10263#1 ------------------------------------------------------------ consensus_10263#0 CGCCGCGCTCTACACCCAGGCCATCAAGCTCGACCCCGACAACCCCACCCTCTATAGCAA 240 consensus_10263#1 ------------------------------------------------------------ consensus_10263#0 TCGGGCTGCTGCATTTCTCCATCTAGTTAAGCTTAATAAGGCACTCGCTGATGCTGATAC 300 consensus_10263#1 --------------------ATCTAGTTAAGCTTAATAAGGCACTCGCTGATCCTGATAC 40 ******************************** ******* consensus_10263#0 GACAATAAAACTCAAGCCACAATGGGAAAAGGGTCATTTCAGGAAAGGGTGTGTTTTAGA 360 consensus_10263#1 GACAATAAAACTCAAGCCACAATGGGAAAAGGGTCATTTCAGGAAAGGGTGTGTTTTAGA 100 ************************************************************ consensus_10263#0 GTCGATGGAACACTATGAGGAGGCAATATCTTCTTTTCAGATAGCTTTGCAACACAATCC 420 consensus_10263#1 GTCGATGGAACACTATGAGGAGGTGAGAG------------------TAAAGGACAATTC 142 *********************** * * * * ***** * consensus_10263#0 ACAAAATACAGAAGTTTCAAGAAAAATTAAGAGGCTTACTCAGTTGGCAAGGGAAAAGAA 480 consensus_10263#1 CTTGCTTTT-----TCTCAACAGGGAGAAGGATAATTATCTCTTTTTTATTTTCTGTTAT 197 * * **** * * * ** *** ** * * consensus_10263#0 GCGGGCTCTTGATGTGGAGAACATGCGTTCTAATGTTGATGTTGCAAAGAACTTGGATTC 540 consensus_10263#1 GTAAGCTTTAGC---------CAAGCCTTCCGTATTTGGCAAGCTGAGAAAATTG----T 244 * *** * * ** ** *** *** * ** *** consensus_10263#0 ACTGAAAACCGAGCTGGCTGGAAAATATGGAGATGCCGAACTGGGGCAAAGTATCTTCAC 600 consensus_10263#1 GGTAAGAAATACCCTAGTTTGGAAGTGCACATATCACTTGCAATTATCAA--AAGTAAAG 302 * * ** ** * * * ** * * ** * * ** * * * consensus_10263#0 TTTTGTTGTTAAT-GTGATTGAATCAGCTATAAAGGTCTGGCATGACACCGGAAAAGTAG 659 consensus_10263#1 TTCTGAAATCAGTTGATGCTGAATACATTATAGTGCAATTGCATTA-AGGGAAACCTTAA 361 ** ** * * * * ***** **** * * **** * * * ** ** consensus_10263#0 ATGCAAGAGTTAATTTTCTTCTTGATGACCAGAAGACTGATACTGAAAAACATGCCCCAG 719 consensus_10263#1 ATCTGTAAGATAAATTTGAATTTTATTCATTTTACCATGTTATATCATAACAT----TGG 417 ** ** *** *** ** ** * ** ** * ***** * consensus_10263#0 TGGTTAACATTGA-CAAGGCCTTTGACTCACCCCACACTCACAGCAGTTGCTTCACATTT 778 consensus_10263#1 TCTTTACAATTGAACAAAGTTTTT-------CCTTCAATCATGTTAA------CATGTGT 464 * *** ***** *** * *** ** ** *** * ** * * consensus_10263#0 TTGCGGCAATATTCCGAGGAGTCTTTCTCAAAGGCTGCTTGTATGGTAGCACCTAAGAGC 838 consensus_10263#1 TCATGTC--TATTCGGGGGTTTTATTTTTG-----TGCTTGAGCAGTGGC-CCTCTTGCT 516 * * * ***** * ** * ** * ****** ** ** *** consensus_10263#0 GCCATCT-CGTACCCTCAGGTCTGGAAAGGACAGGGATCAAGAAAATGGAAGCTTGACCA 897 consensus_10263#1 GCTATTTTCATATGGCCACA--TGCAAAGATTGGATGTTTGGCTGA-AGTACTTAAACTA 573 ** ** * * ** ** ** **** * * * * * * * ** * consensus_10263#0 G--AGTGATGGTTTCTTTGTGCAATTTGAGTCACCAATTCTGCGGAAGATATGGTTTGTC 955 consensus_10263#1 TTCATCAACTTCTCTTTCATGAGATCAAACTCTTAAAATAT-CAGTAGCATTGATTGTAC 632 * * * ** ** ** * ** ** * * * * ** ** ** * consensus_10263#0 CCTAGCACAACTGAAAAGGGACGAGTATT-ATGCAGGAGTCCTGAGCTCCTGGACATTAG 1014 consensus_10263#1 ATTATCAAGCTATTCAAAATATTAGCATTGATTCTGTATTAGCTATTTTCTGGT-----G 687 ** ** ** * ** *** ** * * * * * * **** * consensus_10263#0 CATCCACGAAGTGCTTCCCCGTATATTCAAAGAAACGGCTTGAATAAACAACAAATGGAC 1074 consensus_10263#1 CAGGCAATATCTTCTTTTCAGATAGCTTTGCAACACAATCC--ACAAAATACAGAAGTTT 745 ** ** * * *** * * * * ** * *** *** * * consensus_10263#0 AGTGAATGGCTCCCAAATTCTTCCCCTGTTGTGGTCATATTCTTTCCTAGCTTACAGTTG 1134 consensus_10263#1 CAAGAAAAATT--AAGAGGCTTACTCAGTT------------------------------ 773 *** * * * *** * * *** consensus_10263#0 CAAAGGGGATATTTTTCATAGCGTGGTGAGAGCTTAGATTTGCATGCCAGATTTTGTAAG 1194 consensus_10263#1 ------------------------------------------------------------ consensus_10263#0 CTGTTGATCTGTATTGTACACCGAGGCACACAAATTTTGCTGATCTGGTTTTTTAATTAT 1254 consensus_10263#1 ------------------------------------------------------------ consensus_10263#0 ATATGCCTTAAGTGGTGCAATTTCCATTGTAAAAAAAAAAAAAAA 1299 consensus_10263#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||