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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10265#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1034 fasta sequence
[CGGCGAGCGACGACGCTCAGATGCGGCGCCGCTGCTCGGGTGGAAGGGCTGGGGCGGAGGGAGGCGTTGCTCGGCGTGCTCCTCTCCACGGCGACGGCGGCGTCCGCGCCCGTCGCCGCCGTGGCCGCGACCGCCGAGTTGCAGGAGGGGTTCCGCACGTACG-AGGATGAGGCCAACAAGTTCAGCATCGCCATTCCACAAGACTGGCTGA-TCGGCGCCGGCG-AGGTCAGCGGCTTCAAGTCCGTCACGGCGTTCTACCCTGACCAAGTCGCCGACTCCAATGTCAGCGTAGCCATCACCGGAATCGGCCCCGATTTCACCAGCCTCAAGTCGTTCGGCGACGTCGACGCCTTCGCAGAGACCCTGGTGAACGGCCTGGACAGGAGCTGGAAACGGCCGCCGGGGGTCGCCGCGAAGCTCATCAACTCCAGGGCAGCCAACGGGTTTTACTACATCGAGTACACGCTGCAGAACCCCGGCGAGCAGCGCCGGCACATTGTCTCGGCCATCGGGATGGCGTTCAACGGCTGGTACAACCGGCTCTACACGGTGACAGGCCAGTACATCGATGAGGACGGGGATGTAGACAAGTACAGGGCTCAGATAGAGAAGTGTGTTCAGTCATTCAGGTTCACATGAAAGAGGAGCAT-CCTACACAACAT-CCAACAAGGCGAGGACGAAAAACATTTTGTAAACCAACGTATTTCGTTATAATTGTAAATCAATCAGTATATTCATGTCATCAGTTCAACCAACTAAATGTACACCAATTGTTCCGAGATTTTGACGATGCGGCCTTGCCGAGGCCAACATGAGCTAATTATGTTGTGGCAAGTCATAAGCATTGTTTTCTATGCATTTTTAAGGGAGAAAAAACAGGTGTATTTGTTAGATTTCAGGCGGCCAAAATTTTGTAAAATTTCAATCACCCAAAGTTGCACATTGCTATATTTTAGTTCATTTTAACATCCCAGTTTAAATATGTTTGTATGTAATTTTGTTTTTTTAATGAAGTTCATGTTTATGGATAAAAA]
[+] EMBL AK068227 [CGGCGAGCGACGACGCTCAGATGCGGCGCCGCTGCTCGGGTGGAAGGGCTGGGGCGGAGGGAGGCGTTGCTCGGCGTGCTCCTCTCCACGGCGACGGCGGCGTCCGCGCCCGTCGCCGCCGTGGCCGCGACCGCCGAGTTGCAGGAGGGGTTCCGCACGTACG AGGATGAGGCCAACAAGTTCAGCATCGCCATTCCACAAGACTGGCTGA TCGGCGCCGGCG AGGTCAGCGGCTTCAAGTCCGTCACGGCGTTCTACCCTGACCAAGTCGCCGACTCCAATGTCAGCGTAGCCATCACCGGAATCGGCCCCGATTTCACCAGCCTCAAGTCGTTCGGCGACGTCGACGCCTTCGCAGAGACCCTGGTGAACGGCCTGGACAGGAGCTGGAAACGGCCGCCGGGGGTCGCCGCGAAGCTCATCAACTCCAGGGCAGCCAACGGGTTTTACTACATCGAGTACACGCTGCAGAACCCCGGCGAGCAGCGCCGGCACATTGTCTCGGCCATCGGGATGGCGTTCAACGGCTGGTACAACCGGCTCTACACGGTGACAGGCCAGTACATCGATGAGGACGGGGATGTAGACAAGTACAGGGCTCAGATAGAGAAGTGTGTTCAGTCATTCAGGTTCACATGAAAGAGGAGCAT CCTACACAACAT CCAACAAGGCGAGGACGAAAAACATTTTGTAAACCAACGTATTTCGTTATAATTGTAAATCAATCAGTATATTCATGTCATCAGTTCAACCAACTAAATGTACACCAATTGTTCCGAGATTTTGACGATGCGGCCTTGCCGAGGCCAACATGAGCTAATTATGTTGTGGCAAGTCATAAGCATTGTTTTCTATGCATTTTTAAGGGAGAAAAAACAGG ]
[+] EMBL AU078715 [CGGCGAGCGACGACGCTCAGATGCGGCGCCGCTGCTCGGGTGGAAGGGCTGGGGCGGAGGGAGGCGTTGCTCGGCGTGCTCCTCTCCANGGCGACGGCGGCGTCCGCGCNCGTCGCCGCCGTGGCCGCGACCGCCGAGTTGCAGGAAGGGTTNCGCACGTACGAAGGATGAGGCCAACAAGTTCAGCATCGCCATTCCACAAGACTNGCTGATTCGGCGCCGGCGAAGTTNAACGGGTTtna ]
[+] EMBL AU055723 [ GAGGAGCATCCCTACACAACATCCCAACAAGGCGAGGACGAAAAACATTTTGTAAACCAACGTATTTCGTTATAATTGTAAATCAATCAGTATATTCATGTCATCAGTTCAACCAACTAAATGTACACCAATTGTTCCGAGATTTTGACGATGCGGCCTTGCCGAGGCCAACATGAGCTAATTATGTTGTGGCAAGTCATAAGCATTGTTTTCTATGCATTTTTAAGGGAGAAAAAACAGGTGTATTTGTTAGATTTCAGGCGGCCAAAATTTTGTAAAATTTCAATCACCCAAAGTTGCACATTGCTATATTTTAGTTCATTTTAACATCCCAGTTTAAATATGTTTGTATGTAATTTTGTTTTTTTAATGAAGTTCATGTTTATGGATAAAAA]
[+] EMBL BQ908470 [ ccgTCAGTTCAACCAACTAAATGTACACC ATTGTTCCGAGATTTTGACGATGCGGCCTTGCCGAGGCCAACATGAGCTAATTATGTTGTGGCAAGTCATAAGCATTGTTTTCTATGCATTTTTAAGGGAGAAAAAACAGGTGTATTTGTTAGATTTCAGGCGGCCAAAATTTTGTAAAATTTCAATCACCCAAAGTTGCACATTGCTATATTTTAGTTCATTTTAACATCCCAGTTTAAAaaaa ]
consensusID : consensus_10265#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 719 fasta sequence
[GTTGCCCTTAGAGGCAGGAGGGGTTCCGCACGTACGAGGATGAGGCCAACAAGTTCAGCATCGCCATTCCACAAGACTGGCTGATCGGCGCCGGCGAGGTCATCGGCTTCAAGTCCGGCACGGCGTTCTACCCTGACCAACTCGCCGACTCCAATGTCAGCGTAACCATCACCGGAATCGGCCCCGATTTCACCAGCCTCAAGTCGTTCGGCGACGTCCACGCCTTCGCAGAGACCCTGGTGAACGGCCTGGACAGGAGCTGGAAACGGCCGCCGGGGGTCGCCGCGAAGCTCATCAACTCCAGGGCAGCCAACGGGTTTTACTACATCCAGTACACGCTGCATAACCCCGGCGAGCAGCGCCGGCACATTGTCTCGGCCATCGGGATGGCGTTCAACGGCTGGTACAACCGGCTCTACACGGTGACAGGCCACTACATCGATGAGGACGGGGATGTACACAAGTACAGGGCTCATATACAGAAGTGTGTTCAGTCATTCAAGTTCACATGAAAGAGGAGCATCCTACACAACATCCAACAAGGCGAGGACGAAAAACATTTTGTAAACCAACGTATTTCGTTATAATTGTAAATCAATCAGTATATTCATGTCATCAGGTCAACCAACTAAATGTACACCAATTGTTCCGAGATTTTGACGATGCGGCCTTGCCGAGGCCAACATGAGCTAATTATGTTGTGGCAAAAACCTAAAAGG]
[+] EMBL CB681521 [GTTGCCCTTAGAGGCAGGAGGGGTTCCGCACGTACGAGGATGAGGCCAACAAGTTCAGCATCGCCATTCCACAAGACTGGCTGATCGGCGCCGGCGAGGTCATCGGCTTCAAGTCCGGCACGGCGTTCTACCCTGACCAACTCGCCGACTCCAATGTCAGCGTAACCATCACCGGAATCGGCCCCGATTTCACCAGCCTCAAGTCGTTCGGCGACGTCCACGCCTTCGCAGAGACCCTGGTGAACGGCCTGGACAGGAGCTGGAAACGGCCGCCGGGGGTCGCCGCGAAGCTCATCAACTCCAGGGCAGCCAACGGGTTTTACTACATCCAGTACACGCTGCATAACCCCGGCGAGCAGCGCCGGCACATTGTCTCGGCCATCGGGATGGCGTTCAACGGCTGGTACAACCGGCTCTACACGGTGACAGGCCACTACATCGATGAGGACGGGGATGTACACAAGTACAGGGCTCATATACAGAAGTGTGTTCAGTCATTCAAGTTCACATGAAAGAGGAGCATCCTACACAACATCCAACAAGGCGAGGACGAAAAACATTTTGTAAACCAACGTATTTCGTTATAATTGTAAATCAATCAGTATATTCATGTCATCAGGTCAACCAACTAAATGTACACCAATTGTTCCGAGATTTTGACGATGCGGCCTTGCCGAGGCCAACATGAG ]
[-] EMBL CB682572 [ GGTTCCGCACGTACGAGGATGAGGCCAACAAGTTCAGCATCGCCATTCCACAAGACTGGCTGATCGGCGCCGGCGAGGTCAGCGGCTTCAAGTCCGTCACGGCGTTCTACCCTGACCAAGTCGCCGACTCCAATGTCAGCGTAGCCATCACCGGAATCGGCCCCGATTTCACCAGCCTCAAGTCGTTCGGCGACGTCGACGCCTTCGCAGAGACCCTGGTGAACGGCCTGGACAGGAGCTGGAAACGGCCGCCGGGGGTCGCCGCGAAGCTCATCAACTCCAGGGCAGCCAACGGGTTTTACTACATCGAGTACACGCTGCAGAACCCCGGCGAGCAGCGCCGGCACATTGTCTCGGCCATCGGGATGGCGTTCAACGGCTGGTACAACCGGCTCTACACGGTGACAGGCCAGTACATCGATGAGGACGGGGATGTAGACAAGTACAGGGCTCAGATAGAGAAGTGTGTTCAGTCATTCAGGTTCACATGAAAGAGGAGCATCCTACACAACATCCAACAAGGCGAGGACGAAAAACATTTTGTAAACCAACGTATTTGGTTATAATTGTAAATCAATCAGTATATTCATGTCATCAGTTCAACCAACTAAATGTACACCAATTGTTCCGAGATTTTGACGATGCGGCCTTGCCGAGGCCAACATGAGCTAATTATGTTGTGGCAAAAACCTAAAAGG]
consensusID : consensus_10265#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 252 fasta sequence
[CCGTCAGTTCAACCAACTTAAAAATTGGTAACAACCACATTTGGTTTCCGGATTTTGACGATGCGGGCCTTGCCCGAGGCCACATGAGCTAATTATGTTGTGGCAAGTCATAAGCATTGTTTTCTAGCATTTTTAAGGGAGAAAAAACAGGTGTATTTGTTAGATTTCAGCGGCCAAATTTTGTAAAATTTCAATCACCCAAGTTGCACATTGCTATATTTTTAGTTCATTTAACATCCCAGTTTAAAAAAA]
[+] EMBL BQ908452 [CCGTCAGTTCAACCAACTTAAAAATTGGTAACAACCACATTTGGTTTCCGGATTTTGACGATGCGGGCCTTGCCCGAGGCCACATGAGCTAATTATGTTGTGGCAAGTCATAAGCATTGTTTTCTAGCATTTTTAAGGGAGAAAAAACAGGTGTATTTGTTAGATTTCAGCGGCCAAATTTTGTAAAATTTCAATCACCCAAGTTGCACATTGCTATATTTTTAGTTCATTTAACATCCCAGTTTAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10265#0 CGGCGAGCGACGACGCTCAGATGCGGCGCCGCTGCTCGGGTGGAAGGGCTGGGGCGGAGG 60
consensus_10265#1 ------------------------------------------------------------
consensus_10265#2 ------------------------------------------------------------
consensus_10265#0 GAGGCGTTGCTCGGCGTGCTCCTCTCCACGGCGACGGCGGCGTCCGCGCCCGTCGCCGCC 120
consensus_10265#1 ------------------------------------------------------------
consensus_10265#2 ------------------------------------------------------------
consensus_10265#0 GTGGCCGCGACCGCCGAGTTGCAGGAGGGGTTCCGCACGTACGAGGATGAGGCCAACAAG 180
consensus_10265#1 ------GTTGCC-CTTAGAGGCAGGAGGGGTTCCGCACGTACGAGGATGAGGCCAACAAG 53
consensus_10265#2 ------------------------------------------------------------
consensus_10265#0 TTCAGCATCGCCATTCCACAAGACTGGCTGATCGGCGCCGGCGAGGTCAGCGGCTTCAAG 240
consensus_10265#1 TTCAGCATCGCCATTCCACAAGACTGGCTGATCGGCGCCGGCGAGGTCATCGGCTTCAAG 113
consensus_10265#2 ------------------------------------------------------------
consensus_10265#0 TCCGTCACGGCGTTCTACCCTGACCAAGTCGCCGACTCCAATGTCAGCGTAGCCATCACC 300
consensus_10265#1 TCCGGCACGGCGTTCTACCCTGACCAACTCGCCGACTCCAATGTCAGCGTAACCATCACC 173
consensus_10265#2 ------------------------------------------------------------
consensus_10265#0 GGAATCGGCCCCGATTTCACCAGCCTCAAGTCGTTCGGCGACGTCGACGCCTTCGCAGAG 360
consensus_10265#1 GGAATCGGCCCCGATTTCACCAGCCTCAAGTCGTTCGGCGACGTCCACGCCTTCGCAGAG 233
consensus_10265#2 ------------------------------------------------------------
consensus_10265#0 ACCCTGGTGAACGGCCTGGACAGGAGCTGGAAACGGCCGCCGGGGGTCGCCGCGAAGCTC 420
consensus_10265#1 ACCCTGGTGAACGGCCTGGACAGGAGCTGGAAACGGCCGCCGGGGGTCGCCGCGAAGCTC 293
consensus_10265#2 ------------------------------------------------------------
consensus_10265#0 ATCAACTCCAGGGCAGCCAACGGGTTTTACTACATCGAGTACACGCTGCAGAACCCCGGC 480
consensus_10265#1 ATCAACTCCAGGGCAGCCAACGGGTTTTACTACATCCAGTACACGCTGCATAACCCCGGC 353
consensus_10265#2 ------------------------------------------------------------
consensus_10265#0 GAGCAGCGCCGGCACA-TTGTCTCGGCCATCGGGATGGCGTTCAACGGCTGGTACAACCG 539
consensus_10265#1 GAGCAGCGCCGGCACA-TTGTCTCGGCCATCGGGATGGCGTTCAACGGCTGGTACAACCG 412
consensus_10265#2 -----CCGTCAGTTCAACCAACTTAAAAATTGG--TAACAACCA-CATTTGGTTT--CCG 50
** * * ** ** ** ** * * ** * **** ***
consensus_10265#0 GCTCTACACGGTGACAGGCCAGTACATCGATGAGGACGGGGATGTAGACAAGTACAGGGC 599
consensus_10265#1 GCTCTACACGGTGACAGGCCACTACATCGATGAGGACGGGGATGTACACAAGTACAGGGC 472
consensus_10265#2 GATTTTGACGATG-CGGGCCTTGCCCGAGGCCACATGAGCTAATTATGTTGTGGCAAG-- 107
* * * *** ** * **** * * * * * ** ** *
consensus_10265#0 TCAGATAGAGAAGTGTGTTCAGTCATTCA-GGTTCACATGAAAGAGGAGCATCCTACACA 658
consensus_10265#1 TCATATACAGAAGTGTGTTCAGTCATTCA-AGTTCACATGAAAGAGGAGCATCCTACACA 531
consensus_10265#2 TCATA---AGCATTGTTTTCTAGCATTTTTAAGGGAGAAAAAACAGGTGTATT---TGTT 161
*** * ** * *** *** **** * * *** *** * **
consensus_10265#0 ACATCCAACAAGGCGAGGACGAAAAACATTTTGTAAACCAA--CGTATTTCGTTATAATT 716
consensus_10265#1 ACATCCAACAAGGCGAGGACGAAAAACATTTTGTAAACCAA--CGTATTTCGTTATAATT 589
consensus_10265#2 AGATTTCAGCGGCCAAATTTTGTAAAATTTCAATCACCCAAGTTGCACATTGCTATATTT 221
* ** * * * * *** ** * * **** * * * * **** **
consensus_10265#0 GTAAATCAATCAGTATATTCATGTCATCAGTTCAACCAACTAAATGTACACCAATTGTTC 776
consensus_10265#1 GTAAATCAATCAGTATATTCATGTCATCAGGTCAACCAACTAAATGTACACCAATTGTTC 649
consensus_10265#2 TTAGTTCATTTAACATCCCAGTTTAAAAAAA----------------------------- 252
** *** * * ** * * * *
consensus_10265#0 CGAGATTTTGACGATGCGGCCTTGCCGAGGCCAACATGAGCTAATTATGTTGTGGCAAGT 836
consensus_10265#1 CGAGATTTTGACGATGCGGCCTTGCCGAGGCCAACATGAGCTAATTATGTTGTGGCAAAA 709
consensus_10265#2 ------------------------------------------------------------
consensus_10265#0 -CATAAGCATTGTTTTCTATGCATTTTTAAGGGAGAAAAAACAGGTGTATTTGTTAGATT 895
consensus_10265#1 ACCTAAAAGG-------------------------------------------------- 719
consensus_10265#2 ------------------------------------------------------------
consensus_10265#0 TCAGGCGGCCAAAATTTTGTAAAATTTCAATCACCCAAAGTTGCACATTGCTATATTTTA 955
consensus_10265#1 ------------------------------------------------------------
consensus_10265#2 ------------------------------------------------------------
consensus_10265#0 GTTCATTTTAACATCCCAGTTTAAATATGTTTGTATGTAATTTTGTTTTTTTAATGAAGT 1015
consensus_10265#1 ------------------------------------------------------------
consensus_10265#2 ------------------------------------------------------------
consensus_10265#0 TCATGTTTATGGATAAAAA 1034
consensus_10265#1 -------------------
consensus_10265#2 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||