These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10270#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1173 fasta sequence [GTGCCGTAGAGAGACTGTGTGTGTGTGTGACGGGGGTCGGGGGAACCTGCTCCCATGGGCGCCACGCTGCTGCTCCTGTGCGCCGACTTCTCGGCTGTTGCCGGCGGCCGCCGGCGGCCTTCCCTGCCCTCG-GAGCCACGGTTGGCGGCTCCCGCTGCTGGGTCCCGTGCGCCGCCGTCGAGAGCCTCCGTCCGCCCGTCCGCTGCCGCCGCCCCGCTCGCCGCGCGCGGCCTGCCGCACCACGCCTCCGTCGCTGGGCAAAACAGTGGAATTTACACTGTTGGTGATTTTATGACTAAAAGGGAAGAACTCCATGTTGTGAAGTCAACAACTTCAGTCGATGAAGCCCTTGAGATGCTGGTGGAGCATAGGATAACTGGCTTTCCTGTTATTGATGACGAGTGGAATTTGGTTGGCGTTGTGTCAGATTATGATCTCTTAGCACTCGATTCAATATCAGGAAATGGACTTGCGGAAGTAGACATATTTCCTGAGGTGGATAGTACTTGGAAGACGTTCAATGAGATACAGAAGCTCTTGAGCAAAACCAATGGGAAAGTCATTGGTGATGTTATGACGTCTGCACCTCTTGTGGTGCGTGAAACTACTAACCTTGAAGATGCTGCAAGGTTACTCCTTGAAACTAAGTACCGCAGGTTACCTGTAGTTGACAGTTCAGGCAAATTGGTTGGGATCATAACAAGAGGGAACGTCGTCAGGGCTGCCCTTAAAATTAAGAAAAAGTTTGAAGGTGAACTTTGAATGGATACTGTGGATTGACCCTTTGGAGACATTTAGGGGCTTCTACATCGGGGAGATGAACATACGGCTAGGCAATTGAATTCAAGCCATTGTTTCAGTGGCAAGCGAACTTCGCCACCATGTTTATACCAGGCGTAAGTTCAATAACTGCCAAGTGTAAAGTGATGGTTAAAGGACTCGTAGCAGTTGAAAGGGAAGCTCTAATTTTCTACTATACTAGTGCCATGCTATATCAGCTCATGGGTTGTAACGGTATCTAGAGACAGATGAATGGTTTTATGGTATTTAGTTTTTTTTAGAGTAAATTTCATAAAACTATGGGTATTTTGTATAATTTATCACAAACATACGGGCCAATTTGATTTAAAGGAATGCCAAAGGACTTTTGGAGGAATAGGATTCCAAAGGATT] [+] EMBL CB681806 [GTGCCGTAGAGAGACTGTGTGTGTGTGTGACGGGGGTCGGGGGAACCTGCTCCCATGGGCGCCACGCTGCTGCTCCTGTGCGCCGACTTCTCGGCTGTTGCCGGCGGCCGCCGGCGGCCTTCCCTGCCCTCG GAGCCACGGTTGGCGGCTCCCGCTGCTGGGTCCCGTGCGCCGCCGTCGAGAGCCTCCGTCCGCCCGTCCGCTGCCGCCGCCCCGCTCGCCGCGCGCGGCCTGCCGCACCACGCCTCCGTCGCTGGGCAAAACAGTGGAATTTACACTGTTGGTGATTTTATGACTAAAAGGGAAGAACTCCATGTTGTGAAGTCAACAACTTCAGTCGATGAAGCCCTTGAGATGCTGGTGGAGCATAGGATAACTGGCTTTCCTGTTATTGATGACGAGTGGAATTTGGTTGGCGTTGTGTCAGATTATGATCTCTTAGCACTCGATTCAATATCAGGAAATGGACTTGCGGAAGTAGACATATTTCCTGAGGTGGATAGTACTTGGAAGACGTTCAATGAGATACAGAAGCTCTTGAGCAAAACCAATGGGAAAGTCATTGGTGATGTTATGACGTCTGCACCTCTTGTGGTGCGTGAAACTACTAACCTTGAAGATGCTGCAAGGTTACTCCTTGAAACTAAGTACCGCAGGTTACCTGTAGTTGACAGTTCAGGCAAATTGGTTG ] [+] EMBL AK121969 [ GTGTGACGGGGGTCGGGGGAACCTGCTCCCATGGGCGCCACGCTGCTGCTCCTGTGCGCCGACTTCTCGGCTGTTGCCGGCGGCCGCCGGCGGCCTTCCCTGCCCTCG GAGCCACGGTTGGCGGCTCCCGCTGCTGGGTCCCGTGCGCCGCCGTCGAGAGCCTCCGTCCGCCCGTCCGCTGCCGCCGCCCCGCTCGCCGCGCGCGGCCTGCCGCACCACGCCTCCGTCGCTGGGCAAAACAGTGGAATTTACACTGTTGGTGATTTTATGACTAAAAGGGAAGAACTCCATGTTGTGAAGTCAACAACTTCAGTCGATGAAGCCCTTGAGATGCTGGTGGAGCATAGGATAACTGGCTTTCCTGTTATTGATGACGAGTGGAATTTGGTTGGCGTTGTGTCAGATTATGATCTCTTAGCACTCGATTCAATATCAGGAAATGGACTTGCGGAAGTAGACATATTTCCTGAGGTGGATAGTACTTGGAAGACGTTCAATGAGATACAGAAGCTCTTGAGCAAAACCAATGGGAAAGTCATTGGTGATGTTATGACGTCTGCACCTCTTGTGGTGCGTGAAACTACTAACCTTGAAGATGCTGCAAGGTTACTCCTTGAAACTAAGTACCGCAGGTTACCTGTAGTTGACAGTTCAGGCAAATTGGTTGGGATCATAACAAGAGGGAACGTCGTCAGGGCTGCCCTTAAAATTAAGAAAAAGTTTGAAGGTGAACTTTGAATGGATACTGTGGATTGACCCTTTGGAGACATTTAGGGGCTTCTACATCGGGGAGATGAACATACGGCTAGGCAATTGAATTCAAGCCATTGTTTCAGTGGCAAGCGAACTTCGCCACCATGTTTATACCAGGCGTAAGTTCAATAACTGCCAAGTGTAAAGTGATGGTTAAAGGACTCGTAGCAGTTGAAAGGGAAGCTCTAATTTTCTACTATACTAGTGCCATGCTATATCAGCTCATGGGTTGTAACGGTATCTAGAGACAGATGAATGGTTTTATGGTATTTAGTTTTTTTTAGAGTAAATTTCATAAAACTATGGGTATTTTGTATAATTTATCACAAACATACGGGCCAATTTGATTTAAAGGAATGCCAAAGGACTTTTGGAGGAATAGGATTCCAAAGGATT] [-] EMBL BI805467 [ TTCCCTGCCCTCGTGAGCCANGGNNGGCGGCTCCCGCTGCTGGGTCCNGTGGGCCGCCGTCGAGAGCCTCCGTCCGCCCGTCCGCTGCCGCCGCCCCGCTCGCCG GCGCGG CTGCCG ACCACGCCTCCGTCGCTGGGCAAAACAGTGGAATTTACACT ] [-] EMBL CB681807 [ GGTTGGCGTTGTGTCAGATTATGATCTCTTAGCACTCGATTCAATATCAGGAAATGGACTTGCGGAAGTAGACATATTTCCTGAGGTGGATAGTACTTGGAAGACGTTCAATGAGATACAGAAGCTCTTGAGCAAAACCAATGGGAAAGTCATTGGTGATGTTATGACGTCTGCACCTCTTGTGGTGCGTGAAACTACTAACCTTGAAGATGCTGCAAGGTTACTCCTTGAAACTAAGTACCGCAGGTTACCTGTAGTTGACAGTTCAGGCAAATTGGTTGGGATCATAACAAGAGGGAACGTCGTCAGGGCTGCCCTTAAAATTAAGAAAAAGTTTGAAGGTGAACTTTGAATGGATACTGTGGATTGACCCTTTGGAGACATTTAGGGGCTTCTACATCGGGGAGATGAACATACGGCTAGGCAATTGAATTCAAGCCATTGTTTCAGTGGCAAGCGAACTTCGCCACCATGTTTATACCAGGCGTAAGTTCAATAACTGCCAAGTGTAAAGTGATGGTTAAAGGACTCGTAGCAGTTGAAAGGGAAGCTCTAATTTTCTACTATACTAGTGCCATGCTATATCAGCTCATGGGTTGTAACGGTATCTAGAGACAGATGAATGGTTTTATGGTATTTAGTTTTTTTTAGAGTAAATTTCATAAAACTATGGGTATTTTGTATAATTTATCACAAACATACGGGCCAATATGGTTTAAAGGAATGCCAAAGGACTTTTGGAGGAAaaaaaaagg ] [+] EMBL CF326282 [ ACTAACCTTGAAGATGCTGCAAGGTTACTCCTTGAAACTAAGTACCGCAGGTTACCTGTAGTTGACAGTTCAGGCAAATTGGTTGGGATCATAACAAGAGGGAACGTCGTCAGGGCTGCCCTTAAAATTAAGAAAAAGTTTGAAGGTGAACTTTGAATGGATACTGTGGATTGACCCTTTGGAGACATTTAGGGGCTTCTACATCGGGGAGATGAACATACGGCTAGGCAATTGAATTCAAGCCATTGTTTCAGTGGCAAGCGAACTTCGCCACCATGTTTATACCAGGCGTAAGTTCAATAACTGCCAAGTGTAAAGTGATGGTTAAAGGACTCGTAGCAGTTGAAAGGGAAGCTCTAATTTTCTACTATACTAGTGCCATGCTATATCAGCTCATGGGTTGTAACGGTATCTAGAGACAGATGAATGGTTTTATGGTATTTAGTTTTTTTTAGAGTAAATTTCATAAAACTATGGGTATTTTGTATAATTTATCACAAACATACGGGCCAATTTGATTTAAAGGAATGCCAAAGGACTTTTGGAGGAATAGGATTCC ] consensusID : consensus_10270#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 360 fasta sequence [TGACTGGACTGAAGGAGTAGAAAATACGGCTAGGCAATTGAATTCAAGCCATTGTTTCAGTGGCAAGCGAACTTCGCCA-CCATGTTTATACCAGGCGTAAGTTCAATAACTGCCAAGTGTAAAGTGATGGTTAAAGGACTCGTAGCAGTTGAAAGGGAAGCTCTAATTTTCTACTATACTAGTGCCATGCTATATCAGCTCATGGGTTGTAACGGTATCTAGAGACAGATGAATGGTTTTATGGTATTTAGTTTTTTTTAGAGTAAATTTCATAAAACTATGGGTATTTTGTATAATTTATCACAAACATACGGGCCAATTTGATTTAAAGGAATGCCAAAGGACTTTTGGAGGAAAAAA] [+] EMBL CF312797 [TGACTGGACTGAAGGAGTAGAAAATACGGCTAGGCAATTGAATTCAAGCCATTGTTTCAGTGGCAAGCGAACTTCGCCA CCATGTTTATACCAGGCGTAAGTTCAATAACTGCCAAGTGTAAAGTGATGGTTAAAGGACTCGTAGCAGTTGAAAGGGAAGCTCTAATTTTCTACTATACTAGTGCCATGCTATATCAGCTCATGGGTTGTAACGGTATCTAGAGACAGATGAATGGTTTTATGGTATTTAGTTTTTTTTAGAGTAAATTTCATAAAACTATGGGTATTTTGTATAATTTATCACAAACATACGGGCCAATTTGATTTAAAGGAATGCCAAAGGACTTTTGGAGGAAAAA ] [-] EMBL CF312798 [ GGCAATTGAATTCAAGCCATTGTTTCAGTGGCAAGCGAACTTCGCCANCCATGTTTATACCAGGCGTAAGTTCAATAACTGCCAAGTGTAAAGTGATGGTTAAAGGACTCGTAGCAGTTGAAAGGGAAGCTCTAATTTTCTACTATACTAGTGCCATGCTATATCAGCTCATGGGTTGTAACGGTATCTAGAGACAGATGAATGGTTTTATGGTATTTAGTTTTTTTTAGAGTAAATTTCATAAAACTATGGGTATTTTGTATAATTTATCACAAACATACGGGCCAATTTGATTTAAAGGAATGCCAAAGGACTTTTGGAGGAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10270#0 GTGCCGTAGAGAGACTGTGTGTGTGTGTGACGGGGGTCGGGGGAACCTGCTCCCATGGGC 60 consensus_10270#1 ------------------------------------------------------------ consensus_10270#0 GCCACGCTGCTGCTCCTGTGCGCCGACTTCTCGGCTGTTGCCGGCGGCCGCCGGCGGCCT 120 consensus_10270#1 ------------------------------------------------------------ consensus_10270#0 TCCCTGCCCTCGGAGCCACGGTTGGCGGCTCCCGCTGCTGGGTCCCGTGCGCCGCCGTCG 180 consensus_10270#1 ------------------------------------------------------------ consensus_10270#0 AGAGCCTCCGTCCGCCCGTCCGCTGCCGCCGCCCCGCTCGCCGCGCGCGGCCTGCCGCAC 240 consensus_10270#1 ------------------------------------------------------------ consensus_10270#0 CACGCCTCCGTCGCTGGGCAAAACAGTGGAATTTACACTGTTGGTGATTTTATGACTAAA 300 consensus_10270#1 ------------------------------------------------------------ consensus_10270#0 AGGGAAGAACTCCATGTTGTGAAGTCAACAACTTCAGTCGATGAAGCCCTTGAGATGCTG 360 consensus_10270#1 ------------------------------------------------------------ consensus_10270#0 GTGGAGCATAGGATAACTGGCTTTCCTGTTATTGATGACGAGTGGAATTTGGTTGGCGTT 420 consensus_10270#1 ------------------------------------------------------------ consensus_10270#0 GTGTCAGATTATGATCTCTTAGCACTCGATTCAATATCAGGAAATGGACTTGCGGAAGTA 480 consensus_10270#1 ------------------------------------------------------------ consensus_10270#0 GACATATTTCCTGAGGTGGATAGTACTTGGAAGACGTTCAATGAGATACAGAAGCTCTTG 540 consensus_10270#1 ------------------------------------------------------------ consensus_10270#0 AGCAAAACCAATGGGAAAGTCATTGGTGATGTTATGACGTCTGCACCTCTTGTGGTGCGT 600 consensus_10270#1 ------------------------------------------------------------ consensus_10270#0 GAAACTACTAACCTTGAAGATGCTGCAAGGTTACTCCTTGAAACTAAGTACCGCAGGTTA 660 consensus_10270#1 ------------------------------------------------------------ consensus_10270#0 CCTGTAGTTGACAGTTCAGGCAAATTGGTTGGGATCATAACAAGAGGGAACGTCGTCAGG 720 consensus_10270#1 ------------------------------------------------------------ consensus_10270#0 GCTGCCCTTAAAATTAAGAAAAAGTTTGAAGGTGAACTTTGAATGGATACTGTGGATTGA 780 consensus_10270#1 ------------------------------------------------------------ consensus_10270#0 CCCTTTGGAGACATTTAGGGGCTTCTACATCGGGGAGAT-GAACATACGGCTAGGCAATT 839 consensus_10270#1 ---------------------TGACTGGACTGAAGGAGTAGAAAATACGGCTAGGCAATT 39 ** * * * * *** **************** consensus_10270#0 GAATTCAAGCCATTGTTTCAGTGGCAAGCGAACTTCGCCACCATGTTTATACCAGGCGTA 899 consensus_10270#1 GAATTCAAGCCATTGTTTCAGTGGCAAGCGAACTTCGCCACCATGTTTATACCAGGCGTA 99 ************************************************************ consensus_10270#0 AGTTCAATAACTGCCAAGTGTAAAGTGATGGTTAAAGGACTCGTAGCAGTTGAAAGGGAA 959 consensus_10270#1 AGTTCAATAACTGCCAAGTGTAAAGTGATGGTTAAAGGACTCGTAGCAGTTGAAAGGGAA 159 ************************************************************ consensus_10270#0 GCTCTAATTTTCTACTATACTAGTGCCATGCTATATCAGCTCATGGGTTGTAACGGTATC 1019 consensus_10270#1 GCTCTAATTTTCTACTATACTAGTGCCATGCTATATCAGCTCATGGGTTGTAACGGTATC 219 ************************************************************ consensus_10270#0 TAGAGACAGATGAATGGTTTTATGGTATTTAGTTTTTTTTAGAGTAAATTTCATAAAACT 1079 consensus_10270#1 TAGAGACAGATGAATGGTTTTATGGTATTTAGTTTTTTTTAGAGTAAATTTCATAAAACT 279 ************************************************************ consensus_10270#0 ATGGGTATTTTGTATAATTTATCACAAACATACGGGCCAATTTGATTTAAAGGAATGCCA 1139 consensus_10270#1 ATGGGTATTTTGTATAATTTATCACAAACATACGGGCCAATTTGATTTAAAGGAATGCCA 339 ************************************************************ consensus_10270#0 AAGGACTTTTGGAGGAATAGGATTCCAAAGGATT 1173 consensus_10270#1 AAGGACTTTTGGAGGAAAAAA------------- 360 ***************** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||