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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10270#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1173 fasta sequence
[GTGCCGTAGAGAGACTGTGTGTGTGTGTGACGGGGGTCGGGGGAACCTGCTCCCATGGGCGCCACGCTGCTGCTCCTGTGCGCCGACTTCTCGGCTGTTGCCGGCGGCCGCCGGCGGCCTTCCCTGCCCTCG-GAGCCACGGTTGGCGGCTCCCGCTGCTGGGTCCCGTGCGCCGCCGTCGAGAGCCTCCGTCCGCCCGTCCGCTGCCGCCGCCCCGCTCGCCGCGCGCGGCCTGCCGCACCACGCCTCCGTCGCTGGGCAAAACAGTGGAATTTACACTGTTGGTGATTTTATGACTAAAAGGGAAGAACTCCATGTTGTGAAGTCAACAACTTCAGTCGATGAAGCCCTTGAGATGCTGGTGGAGCATAGGATAACTGGCTTTCCTGTTATTGATGACGAGTGGAATTTGGTTGGCGTTGTGTCAGATTATGATCTCTTAGCACTCGATTCAATATCAGGAAATGGACTTGCGGAAGTAGACATATTTCCTGAGGTGGATAGTACTTGGAAGACGTTCAATGAGATACAGAAGCTCTTGAGCAAAACCAATGGGAAAGTCATTGGTGATGTTATGACGTCTGCACCTCTTGTGGTGCGTGAAACTACTAACCTTGAAGATGCTGCAAGGTTACTCCTTGAAACTAAGTACCGCAGGTTACCTGTAGTTGACAGTTCAGGCAAATTGGTTGGGATCATAACAAGAGGGAACGTCGTCAGGGCTGCCCTTAAAATTAAGAAAAAGTTTGAAGGTGAACTTTGAATGGATACTGTGGATTGACCCTTTGGAGACATTTAGGGGCTTCTACATCGGGGAGATGAACATACGGCTAGGCAATTGAATTCAAGCCATTGTTTCAGTGGCAAGCGAACTTCGCCACCATGTTTATACCAGGCGTAAGTTCAATAACTGCCAAGTGTAAAGTGATGGTTAAAGGACTCGTAGCAGTTGAAAGGGAAGCTCTAATTTTCTACTATACTAGTGCCATGCTATATCAGCTCATGGGTTGTAACGGTATCTAGAGACAGATGAATGGTTTTATGGTATTTAGTTTTTTTTAGAGTAAATTTCATAAAACTATGGGTATTTTGTATAATTTATCACAAACATACGGGCCAATTTGATTTAAAGGAATGCCAAAGGACTTTTGGAGGAATAGGATTCCAAAGGATT]
[+] EMBL CB681806 [GTGCCGTAGAGAGACTGTGTGTGTGTGTGACGGGGGTCGGGGGAACCTGCTCCCATGGGCGCCACGCTGCTGCTCCTGTGCGCCGACTTCTCGGCTGTTGCCGGCGGCCGCCGGCGGCCTTCCCTGCCCTCG GAGCCACGGTTGGCGGCTCCCGCTGCTGGGTCCCGTGCGCCGCCGTCGAGAGCCTCCGTCCGCCCGTCCGCTGCCGCCGCCCCGCTCGCCGCGCGCGGCCTGCCGCACCACGCCTCCGTCGCTGGGCAAAACAGTGGAATTTACACTGTTGGTGATTTTATGACTAAAAGGGAAGAACTCCATGTTGTGAAGTCAACAACTTCAGTCGATGAAGCCCTTGAGATGCTGGTGGAGCATAGGATAACTGGCTTTCCTGTTATTGATGACGAGTGGAATTTGGTTGGCGTTGTGTCAGATTATGATCTCTTAGCACTCGATTCAATATCAGGAAATGGACTTGCGGAAGTAGACATATTTCCTGAGGTGGATAGTACTTGGAAGACGTTCAATGAGATACAGAAGCTCTTGAGCAAAACCAATGGGAAAGTCATTGGTGATGTTATGACGTCTGCACCTCTTGTGGTGCGTGAAACTACTAACCTTGAAGATGCTGCAAGGTTACTCCTTGAAACTAAGTACCGCAGGTTACCTGTAGTTGACAGTTCAGGCAAATTGGTTG ]
[+] EMBL AK121969 [ GTGTGACGGGGGTCGGGGGAACCTGCTCCCATGGGCGCCACGCTGCTGCTCCTGTGCGCCGACTTCTCGGCTGTTGCCGGCGGCCGCCGGCGGCCTTCCCTGCCCTCG GAGCCACGGTTGGCGGCTCCCGCTGCTGGGTCCCGTGCGCCGCCGTCGAGAGCCTCCGTCCGCCCGTCCGCTGCCGCCGCCCCGCTCGCCGCGCGCGGCCTGCCGCACCACGCCTCCGTCGCTGGGCAAAACAGTGGAATTTACACTGTTGGTGATTTTATGACTAAAAGGGAAGAACTCCATGTTGTGAAGTCAACAACTTCAGTCGATGAAGCCCTTGAGATGCTGGTGGAGCATAGGATAACTGGCTTTCCTGTTATTGATGACGAGTGGAATTTGGTTGGCGTTGTGTCAGATTATGATCTCTTAGCACTCGATTCAATATCAGGAAATGGACTTGCGGAAGTAGACATATTTCCTGAGGTGGATAGTACTTGGAAGACGTTCAATGAGATACAGAAGCTCTTGAGCAAAACCAATGGGAAAGTCATTGGTGATGTTATGACGTCTGCACCTCTTGTGGTGCGTGAAACTACTAACCTTGAAGATGCTGCAAGGTTACTCCTTGAAACTAAGTACCGCAGGTTACCTGTAGTTGACAGTTCAGGCAAATTGGTTGGGATCATAACAAGAGGGAACGTCGTCAGGGCTGCCCTTAAAATTAAGAAAAAGTTTGAAGGTGAACTTTGAATGGATACTGTGGATTGACCCTTTGGAGACATTTAGGGGCTTCTACATCGGGGAGATGAACATACGGCTAGGCAATTGAATTCAAGCCATTGTTTCAGTGGCAAGCGAACTTCGCCACCATGTTTATACCAGGCGTAAGTTCAATAACTGCCAAGTGTAAAGTGATGGTTAAAGGACTCGTAGCAGTTGAAAGGGAAGCTCTAATTTTCTACTATACTAGTGCCATGCTATATCAGCTCATGGGTTGTAACGGTATCTAGAGACAGATGAATGGTTTTATGGTATTTAGTTTTTTTTAGAGTAAATTTCATAAAACTATGGGTATTTTGTATAATTTATCACAAACATACGGGCCAATTTGATTTAAAGGAATGCCAAAGGACTTTTGGAGGAATAGGATTCCAAAGGATT]
[-] EMBL BI805467 [ TTCCCTGCCCTCGTGAGCCANGGNNGGCGGCTCCCGCTGCTGGGTCCNGTGGGCCGCCGTCGAGAGCCTCCGTCCGCCCGTCCGCTGCCGCCGCCCCGCTCGCCG GCGCGG CTGCCG ACCACGCCTCCGTCGCTGGGCAAAACAGTGGAATTTACACT ]
[-] EMBL CB681807 [ GGTTGGCGTTGTGTCAGATTATGATCTCTTAGCACTCGATTCAATATCAGGAAATGGACTTGCGGAAGTAGACATATTTCCTGAGGTGGATAGTACTTGGAAGACGTTCAATGAGATACAGAAGCTCTTGAGCAAAACCAATGGGAAAGTCATTGGTGATGTTATGACGTCTGCACCTCTTGTGGTGCGTGAAACTACTAACCTTGAAGATGCTGCAAGGTTACTCCTTGAAACTAAGTACCGCAGGTTACCTGTAGTTGACAGTTCAGGCAAATTGGTTGGGATCATAACAAGAGGGAACGTCGTCAGGGCTGCCCTTAAAATTAAGAAAAAGTTTGAAGGTGAACTTTGAATGGATACTGTGGATTGACCCTTTGGAGACATTTAGGGGCTTCTACATCGGGGAGATGAACATACGGCTAGGCAATTGAATTCAAGCCATTGTTTCAGTGGCAAGCGAACTTCGCCACCATGTTTATACCAGGCGTAAGTTCAATAACTGCCAAGTGTAAAGTGATGGTTAAAGGACTCGTAGCAGTTGAAAGGGAAGCTCTAATTTTCTACTATACTAGTGCCATGCTATATCAGCTCATGGGTTGTAACGGTATCTAGAGACAGATGAATGGTTTTATGGTATTTAGTTTTTTTTAGAGTAAATTTCATAAAACTATGGGTATTTTGTATAATTTATCACAAACATACGGGCCAATATGGTTTAAAGGAATGCCAAAGGACTTTTGGAGGAAaaaaaaagg ]
[+] EMBL CF326282 [ ACTAACCTTGAAGATGCTGCAAGGTTACTCCTTGAAACTAAGTACCGCAGGTTACCTGTAGTTGACAGTTCAGGCAAATTGGTTGGGATCATAACAAGAGGGAACGTCGTCAGGGCTGCCCTTAAAATTAAGAAAAAGTTTGAAGGTGAACTTTGAATGGATACTGTGGATTGACCCTTTGGAGACATTTAGGGGCTTCTACATCGGGGAGATGAACATACGGCTAGGCAATTGAATTCAAGCCATTGTTTCAGTGGCAAGCGAACTTCGCCACCATGTTTATACCAGGCGTAAGTTCAATAACTGCCAAGTGTAAAGTGATGGTTAAAGGACTCGTAGCAGTTGAAAGGGAAGCTCTAATTTTCTACTATACTAGTGCCATGCTATATCAGCTCATGGGTTGTAACGGTATCTAGAGACAGATGAATGGTTTTATGGTATTTAGTTTTTTTTAGAGTAAATTTCATAAAACTATGGGTATTTTGTATAATTTATCACAAACATACGGGCCAATTTGATTTAAAGGAATGCCAAAGGACTTTTGGAGGAATAGGATTCC ]
consensusID : consensus_10270#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 360 fasta sequence
[TGACTGGACTGAAGGAGTAGAAAATACGGCTAGGCAATTGAATTCAAGCCATTGTTTCAGTGGCAAGCGAACTTCGCCA-CCATGTTTATACCAGGCGTAAGTTCAATAACTGCCAAGTGTAAAGTGATGGTTAAAGGACTCGTAGCAGTTGAAAGGGAAGCTCTAATTTTCTACTATACTAGTGCCATGCTATATCAGCTCATGGGTTGTAACGGTATCTAGAGACAGATGAATGGTTTTATGGTATTTAGTTTTTTTTAGAGTAAATTTCATAAAACTATGGGTATTTTGTATAATTTATCACAAACATACGGGCCAATTTGATTTAAAGGAATGCCAAAGGACTTTTGGAGGAAAAAA]
[+] EMBL CF312797 [TGACTGGACTGAAGGAGTAGAAAATACGGCTAGGCAATTGAATTCAAGCCATTGTTTCAGTGGCAAGCGAACTTCGCCA CCATGTTTATACCAGGCGTAAGTTCAATAACTGCCAAGTGTAAAGTGATGGTTAAAGGACTCGTAGCAGTTGAAAGGGAAGCTCTAATTTTCTACTATACTAGTGCCATGCTATATCAGCTCATGGGTTGTAACGGTATCTAGAGACAGATGAATGGTTTTATGGTATTTAGTTTTTTTTAGAGTAAATTTCATAAAACTATGGGTATTTTGTATAATTTATCACAAACATACGGGCCAATTTGATTTAAAGGAATGCCAAAGGACTTTTGGAGGAAAAA ]
[-] EMBL CF312798 [ GGCAATTGAATTCAAGCCATTGTTTCAGTGGCAAGCGAACTTCGCCANCCATGTTTATACCAGGCGTAAGTTCAATAACTGCCAAGTGTAAAGTGATGGTTAAAGGACTCGTAGCAGTTGAAAGGGAAGCTCTAATTTTCTACTATACTAGTGCCATGCTATATCAGCTCATGGGTTGTAACGGTATCTAGAGACAGATGAATGGTTTTATGGTATTTAGTTTTTTTTAGAGTAAATTTCATAAAACTATGGGTATTTTGTATAATTTATCACAAACATACGGGCCAATTTGATTTAAAGGAATGCCAAAGGACTTTTGGAGGAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10270#0 GTGCCGTAGAGAGACTGTGTGTGTGTGTGACGGGGGTCGGGGGAACCTGCTCCCATGGGC 60
consensus_10270#1 ------------------------------------------------------------
consensus_10270#0 GCCACGCTGCTGCTCCTGTGCGCCGACTTCTCGGCTGTTGCCGGCGGCCGCCGGCGGCCT 120
consensus_10270#1 ------------------------------------------------------------
consensus_10270#0 TCCCTGCCCTCGGAGCCACGGTTGGCGGCTCCCGCTGCTGGGTCCCGTGCGCCGCCGTCG 180
consensus_10270#1 ------------------------------------------------------------
consensus_10270#0 AGAGCCTCCGTCCGCCCGTCCGCTGCCGCCGCCCCGCTCGCCGCGCGCGGCCTGCCGCAC 240
consensus_10270#1 ------------------------------------------------------------
consensus_10270#0 CACGCCTCCGTCGCTGGGCAAAACAGTGGAATTTACACTGTTGGTGATTTTATGACTAAA 300
consensus_10270#1 ------------------------------------------------------------
consensus_10270#0 AGGGAAGAACTCCATGTTGTGAAGTCAACAACTTCAGTCGATGAAGCCCTTGAGATGCTG 360
consensus_10270#1 ------------------------------------------------------------
consensus_10270#0 GTGGAGCATAGGATAACTGGCTTTCCTGTTATTGATGACGAGTGGAATTTGGTTGGCGTT 420
consensus_10270#1 ------------------------------------------------------------
consensus_10270#0 GTGTCAGATTATGATCTCTTAGCACTCGATTCAATATCAGGAAATGGACTTGCGGAAGTA 480
consensus_10270#1 ------------------------------------------------------------
consensus_10270#0 GACATATTTCCTGAGGTGGATAGTACTTGGAAGACGTTCAATGAGATACAGAAGCTCTTG 540
consensus_10270#1 ------------------------------------------------------------
consensus_10270#0 AGCAAAACCAATGGGAAAGTCATTGGTGATGTTATGACGTCTGCACCTCTTGTGGTGCGT 600
consensus_10270#1 ------------------------------------------------------------
consensus_10270#0 GAAACTACTAACCTTGAAGATGCTGCAAGGTTACTCCTTGAAACTAAGTACCGCAGGTTA 660
consensus_10270#1 ------------------------------------------------------------
consensus_10270#0 CCTGTAGTTGACAGTTCAGGCAAATTGGTTGGGATCATAACAAGAGGGAACGTCGTCAGG 720
consensus_10270#1 ------------------------------------------------------------
consensus_10270#0 GCTGCCCTTAAAATTAAGAAAAAGTTTGAAGGTGAACTTTGAATGGATACTGTGGATTGA 780
consensus_10270#1 ------------------------------------------------------------
consensus_10270#0 CCCTTTGGAGACATTTAGGGGCTTCTACATCGGGGAGAT-GAACATACGGCTAGGCAATT 839
consensus_10270#1 ---------------------TGACTGGACTGAAGGAGTAGAAAATACGGCTAGGCAATT 39
** * * * * *** ****************
consensus_10270#0 GAATTCAAGCCATTGTTTCAGTGGCAAGCGAACTTCGCCACCATGTTTATACCAGGCGTA 899
consensus_10270#1 GAATTCAAGCCATTGTTTCAGTGGCAAGCGAACTTCGCCACCATGTTTATACCAGGCGTA 99
************************************************************
consensus_10270#0 AGTTCAATAACTGCCAAGTGTAAAGTGATGGTTAAAGGACTCGTAGCAGTTGAAAGGGAA 959
consensus_10270#1 AGTTCAATAACTGCCAAGTGTAAAGTGATGGTTAAAGGACTCGTAGCAGTTGAAAGGGAA 159
************************************************************
consensus_10270#0 GCTCTAATTTTCTACTATACTAGTGCCATGCTATATCAGCTCATGGGTTGTAACGGTATC 1019
consensus_10270#1 GCTCTAATTTTCTACTATACTAGTGCCATGCTATATCAGCTCATGGGTTGTAACGGTATC 219
************************************************************
consensus_10270#0 TAGAGACAGATGAATGGTTTTATGGTATTTAGTTTTTTTTAGAGTAAATTTCATAAAACT 1079
consensus_10270#1 TAGAGACAGATGAATGGTTTTATGGTATTTAGTTTTTTTTAGAGTAAATTTCATAAAACT 279
************************************************************
consensus_10270#0 ATGGGTATTTTGTATAATTTATCACAAACATACGGGCCAATTTGATTTAAAGGAATGCCA 1139
consensus_10270#1 ATGGGTATTTTGTATAATTTATCACAAACATACGGGCCAATTTGATTTAAAGGAATGCCA 339
************************************************************
consensus_10270#0 AAGGACTTTTGGAGGAATAGGATTCCAAAGGATT 1173
consensus_10270#1 AAGGACTTTTGGAGGAAAAAA------------- 360
***************** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||