These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10271#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1489 fasta sequence [TCCACCCCGTGACCTTCGCTGACACCGTCGCTTTCTCTCATCGATCAGCCATGCCTACTCTCGACGCTCGCCTCCGCCTCCCTCTCGCCGGACTATCGCCGGCGACGACCTCCTTCCCGGGATCCACCCCCAAGCCGGGCAGCCTCTCGTTCGCCCTCAGGCCGCCCTCCGCCTCCCTGTCATCCTCCGCCAGTGCCCCGGCGGCGGCGGCGCCGCCCATCGTCGTCGTGGGCTCCGCCAACGCCGACATCTACGTCGAGGTCGACCGCCTCCCGCTCGTCGGGGAGACGGTGGCGGCGCGCGCCGGCCGCAGCCTCGCGGGCGGGAAGGGCGCCAACCAGGCCGCCTGCGGGGGCCGCCTCGCGGCGGGGCCCACCTACCTCGTGGCGCGCGTCGGGGACGACGCCAACGGGCGGCTCCTCGAGGGCGCCCTCGCGGACGCCGGCGGCGTCCGCCTAGACCGCGTCGCGCGCGCGCCCGGCGCGCCCTCGGGCCACGCCGTGGTGATGCTGATGCCCGGCGGGCAGAACTCCATCATCATCGTCGGCGGCGCCAACATGGAGGGGTGGGCCTCGGGGGTCGGCTCGGACGACCTGGACCTGATCCGCCGGGCTGGCGTGCTGCTGCTGCAGCGGGAGATACCCGATTGGGTCAACGTGCAGGTTGCGCAGGCAGCAAAAGGTGCAGGTGTGCCTGTTATCTTGGACGCCGGTGGAATGGAAGCTCCTGTCCCTGGGGAACTACTGAGCCTGGTGGATATTTTTAGTCCAAATGAAACAGAGCTTGCACGTTTGACTGGGATGCCTACAGAAACATTTGAACAGATCAGTCGAGCTGCAGGAGCATGCCATAAAATGGGTGTGAAAGAAGTGCTGGTTAAACTCGGATCACAAGGATCTGCTTTATTTATTGAAGGGGGGGAGCCGATCAGGCAGCCGATAATTCCTGCCACAGAAGTTGTTGATACGACTGGTGCCGGTGACACTTTCACCTCAGCTTTTGCTGTAGCTCTAGTTGAGGGTAAACCTAAGGAAGAGTGCATGAGATTTGCTGCTGCTGCTGCATCTCTATGTGTTCAAGTAAAGGGAGCCATACCCAGCATGCCTGACCGAAAATCAGT-AATGGACCTTCTGGAATCTGTTCAGGTTGAATAACTGTAGATCTCATGATTGTTTCTCTTCAGCCTCCATTCATCCTCAATAATGGGGCGCGC-GGCCAAATTCGACGGATCCAATGAAGCTCCCATAGACCCTCATGGCCTCATCTGCTCTGCTCATCCTCCAATAATGTGACAACCTTGGAGTGGAAAAACGCATTTCCCGGGTGCCACTGCCATCCATAGTAAACGCACCCAACCCCCAAATAAAGAATGGACATTTCAC-GCATCCATCCTGTTGCTGTAGGCCACTGTAAATACAATGAACAGTTTTCACACTGCCCTGGAGCTATCAGACGGTGACACCGTGCTGTTACTAAAAAAAAAAAAAAA] [+] EMBL AK065097 [TCCACCCCGTGACCTTCGCTGACACCGTCGCTTTCTCTCATCGATCAGCCATGCCTACTCTCGACGCTCGCCTCCGCCTCCCTCTCGCCGGACTATCGCCGGCGACGACCTCCTTCCCGGGATCCACCCCCAAGCCGGGCAGCCTCTCGTTCGCCCTCAGGCCGCCCTCCGCCTCCCTGTCATCCTCCGCCAGTGCCCCGGCGGCGGCGGCGCCGCCCATCGTCGTCGTGGGCTCCGCCAACGCCGACATCTACGTCGAGGTCGACCGCCTCCCGCTCGTCGGGGAGACGGTGGCGGCGCGCGCCGGCCGCAGCCTCGCGGGCGGGAAGGGCGCCAACCAGGCCGCCTGCGGGGGCCGCCTCGCGGCGGGGCCCACCTACCTCGTGGCGCGCGTCGGGGACGACGCCAACGGGCGGCTCCTCGAGGGCGCCCTCGCGGACGCCGGCGGCGTCCGCCTAGACCGCGTCGCGCGCGCGCCCGGCGCGCCCTCGGGCCACGCCGTGGTGATGCTGATGCCCGGCGGGCAGAACTCCATCATCATCGTCGGCGGCGCCAACATGGAGGGGTGGGCCTCGGGGGTCGGCTCGGACGACCTGGACCTGATCCGCCGGGCTGGCGTGCTGCTGCTGCAGCGGGAGATACCCGATTGGGTCAACGTGCAGGTTGCGCAGGCAGCAAAAGGTGCAGGTGTGCCTGTTATCTTGGACGCCGGTGGAATGGAAGCTCCTGTCCCTGGGGAACTACTGAGCCTGGTGGATATTTTTAGTCCAAATGAAACAGAGCTTGCACGTTTGACTGGGATGCCTACAGAAACATTTGAACAGATCAGTCGAGCTGCAGGAGCATGCCATAAAATGGGTGTGAAAGAAGTGCTGGTTAAACTCGGATCACAAGGATCTGCTTTATTTATTGAAGGGGGGGAGCCGATCAGGCAGCCGATAATTCCTGCCACAGAAGTTGTTGATACGACTGGTGCCGGTGACACTTTCACCTCAGCTTTTGCTGTAGCTCTAGTTGAGGGTAAACCTAAGGAAGAGTGCATGAGATTTGCTGCTGCTGCTGCATCTCTATGTGTTCAAGTAAAGGGAGCCATACCCAGCATGCCTGACCGAAAATCAGT AATGGACCTTCTGGAATCTGTTCAGGTTGAATAACTGTAGATCTCATGATTGTTTCTCTTCAGCCTCCATTCATCCTCAATAATGGGGCGCGC GGCCAAATTCGACGGATCCAATGAAGCTCCCATAGACCCTCATGGCCTCATCTGCTCTGCTCATCCTCCAATAATGTGACAACCTTGGAGTGGAAAAACGCATTTCCCGGGTGCCACTGCCATCCATAGTAAACGCACCCAACCCCCAAATAAAGAATGGACATTTCAC GCATCCATCCTGTTGCTGTAGGCCACTGTAAATACAATGAACAGTTTTCACACTGCCCTGGAGCTATCAGACGGTGACACCG ] [+] EMBL CF306810 [ AACTACTGAGCCTGGTGGATATTTTTAGTCCAAATGAAACAGAGCTTGCACGTTTGACTGGGATGCCTACAGAAACATTTGAACAGATCAGTCGAGCTGCAGGAGCATGCCATAAAATGGGTGTGAAAGAAGTGCTGGTTAAACTCGGATCACAAGGATCTGCTTTATTTATTGAAGGGGGGGAGCCGATCAGGCAGCCGATAATTCCTGCCACAGAAGTTGTTGATACGACTGGTGCCGGTGACACTTTCACCTCAGCTTTTGCTGTAGCTCTAGTTGAGGGTAAACCTAACGAAGAGTGCATGAGATTTGCTGCTGCTGCTGCATCTCTATGTGTTCAAGTAAAGGGAGCCATACCCAGCATGCCTGACCGAAAATCAGT AATGGACCTTCTGGAATCTGTTCAGGTTGAATAACTGTAGATCTCAT ] [+] EMBL CA998167 [ ATAATTCCTGCCACAGAAGTTGTTGATACGACTGGTGCCGGTGACACTTTCACCTCAGCTTTTGCTGTAGCTCTAGTTGAGGGTAAACCTAAGGAAGAGTGCATGAGATTTGCTGCTGCTGCTGCATCTCTATGTGTTCAAGTAAAGGGAGCCATACCCAGCATGCCTGACCGAAAATCAGT AATGGACCTTCTGGAATCTGTTCAGGTTGAATAACTGTAGATCTCATGATTGTTTCTCTTCAGCCTCCATTCATCCTCAATAATGGGGCGCGC GGCCAAATTCGACGGATCCAATGAAGCTCCCATAGACCCTCATGGCCTCATCTGCTCTGCTCATCCTCCAATAATGTGACAACCTTGGAGTGGAAAAACGCATTTCCCGGGTGCCACTGCCATCCATAGTAAACGCACCCAACCCCCAAATAAAGAATGGACATTTCAC GCATCCATCCTGTTGCTGTAGGCCACTGTAAATACAATGAACAGTTTTCACACTGCCCTGGAGCTATCAGACGGTGACACCGTGCTGTTACTAAAAAAAA ] [+] EMBL AU174227 [ GCATGAGATTTGCTGCTGCTGCTGCATCTCTATGTGTTCAAGTAAAGGGAGCCATACCCAGCATGCCTGACCGAAAATCAGT AATGGACCTTCTGGAATCTGTTCAGGTTGAATAACTGTAGATCTCATGATTGTTTCTCTTCAGCCTCCATTCATCCTCAATAATGGGGCGCGC GGCCAAATTCGACGGATCCAATGAAGCTCCCATAGACCCTCATGGCCTCATCTGCTCTGCTCATCCTCCAATAATGTGACAACCTTGGAGTGGAAAAACGCATTTCCCGGGTGCCACTGCCATCCATAGTAAACGCACCCAACCCCCAAATAAAGAATGGACATTTCAC GCATCCATCCTGTTGCTGTAGGCCACTGTAAATACAATGAACAGTTTTCACACTGCCCTGGAGCTATCAGACGGTGACACCGTGCTGTTACTATAAAAAAAAA ] [+] EMBL AU181639 [ CCTGACCGAAAATCAGTAAATGGACCTTNTGGAATCTGTTCAGGTTAAATAACTGTAGATCTCATGATTGTTTCTCTTCAGCCTCCATTCATCCTCAATAATGGGGCGCGCGGGCCAAATTCGACGGATCCAATGAAGCTCCCATAGACCCTCATGGCCTCATCTGCTCTGCTCATCCTCCAATAATGTGACAACCTTGGAGTGGAAAAACGCATTTCCCGGGTGCCACTGCCATCCATAGTAAACGCACCCAACCCCCAAATAAAGAATGGACATTTCACGGCATCCATCCTGTTGCTGTAGGCCNCTGTAAATACAATGAACAGTTTTCACACTGCCCTGGAGCTATCAGACGGTGACACCGTGCTGTTCCTAAAAAAAAAAAAAAA] consensusID : consensus_10271#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [GCCATGCCTACTCTCGACGCTCGCCTCCGACTACCTCTCGACGGACTATCGCCGGCGACGACCTTCTTCCCGGGATCCACCCCCAAGCCGGGCAGACTATCGATCGACCTCAGGCCGACCTACGGCTAAATGTGATGCTCCGCCAGAGCCCCGGCGGAGGAAGAAAACCCAATAGATCAAATAAGAATAAACATCCGGCTATACATAAAATAGATAATATTTAAGTATGACTCGCC] [+] EMBL CA758459 [GCCATGCCTACTCTCGACGCTCGCCTCCGACTACCTCTCGACGGACTATCGCCGGCGACGACCTTCTTCCCGGGATCCACCCCCAAGCCGGGCAGACTATCGATCGACCTCAGGCCGACCTACGGCTAAATGTGATGCTCCGCCAGAGCCCCGGCGGAGGAAGAAAACCCAATAGATCAAATAAGAATAAACATCCGGCTATACATAAAATAGATAATATTTAAGTATGACTCGCC] consensusID : consensus_10271#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 194 fasta sequence [TGCCTACTCTCGACGCTCGCCTNCGCCTCCCTCTNGCCGGACTATCGCCGGCNACGACCTCCTTCCCGGNATCCACCCCCAAGCCGGGCAGCCTCTCGTTCGCCCTCAGGCCGCCCTCCGCCTCCCTGTNATCCTCCGCCAGTNCCCCGNNGGCGGCGGCGCCCNATNNGTCGTCGTGGGCTCCGCAACGCCGA] [+] EMBL AU068921 [TGCCTACTCTCGACGCTCGCCTNCGCCTCCCTCTNGCCGGACTATCGCCGGCNACGACCTCCTTCCCGGNATCCACCCCCAAGCCGGGCAGCCTCTCGTTCGCCCTCAGGCCGCCCTCCGCCTCCCTGTNATCCTCCGCCAGTNCCCCGNNGGCGGCGGCGCCCNATNNGTCGTCGTGGGCTCCGCAACGCCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10271#0 TCCACCCCGTGACCTTCGCTGACACCGTCGCTTTCTCTCATCGATCAGCCATGCCTACTC 60 consensus_10271#2 ---------------------------------------------------TGCCTACTC 9 consensus_10271#1 -----------------------------------------------GCCATGCCTACTC 13 ********* consensus_10271#0 TCGACGCTCGCCTCCGCCTCCCTCTCGCCGGACTATCGCCGGCGACGACCTCCTTCCCGG 120 consensus_10271#2 TCGACGCTCGCCTNCGCCTCCCTCTNGCCGGACTATCGCCGGCNACGACCTCCTTCCCGG 69 consensus_10271#1 TCGACGCTCGCCTCCGACTACCTCTCGACGGACTATCGCCGGCGACGACCTTCTTCCCGG 73 ************* ** ** ***** * *************** ******* ******** consensus_10271#0 GATCCACCCCCAAGCCGGGCAGCCTCTCGTTCGCCCTCAGGCCGCCCTCCGCCTCCCTGT 180 consensus_10271#2 NATCCACCCCCAAGCCGGGCAGCCTCTCGTTCGCCCTCAGGCCGCCCTCCGCCTCCCTGT 129 consensus_10271#1 GATCCACCCCCAAGCCGGGCAGACTATCGATCGACCTCAGGCCGACCTACGGCTAAATGT 133 ********************* ** *** *** ********** *** ** ** *** consensus_10271#0 CATCCTCCGCCAGTGCCCCGGCGGCGGCGGCGCCGCCCATCG-TCGTCGTGGGCTCCGCC 239 consensus_10271#2 NATCCTCCGCCAGTNCCCCGNNGGCGGCGGCGCC-CNATNNG-TCGTCGTGGGCTCCGC- 186 consensus_10271#1 GATGCTCCGCCAGAGCCCCGGCGGAGGAAGAAAACCCAATAGATCAAATAAGAATAAACA 193 ** ********* ***** ** ** * * * ** * * * consensus_10271#0 AACGCCGACATCTACG-TCGAGGTCGACCGCCTCCCGCTCGTCGGGGAGACGGTGGCGGC 298 consensus_10271#2 AACGCCGA---------------------------------------------------- 194 consensus_10271#1 TCCGGCTATACATAAAATAGATAATATTTAAGTATGACTCGCC----------------- 236 ** * * consensus_10271#0 GCGCGCCGGCCGCAGCCTCGCGGGCGGGAAGGGCGCCAACCAGGCCGCCTGCGGGGGCCG 358 consensus_10271#2 ------------------------------------------------------------ consensus_10271#1 ------------------------------------------------------------ consensus_10271#0 CCTCGCGGCGGGGCCCACCTACCTCGTGGCGCGCGTCGGGGACGACGCCAACGGGCGGCT 418 consensus_10271#2 ------------------------------------------------------------ consensus_10271#1 ------------------------------------------------------------ consensus_10271#0 CCTCGAGGGCGCCCTCGCGGACGCCGGCGGCGTCCGCCTAGACCGCGTCGCGCGCGCGCC 478 consensus_10271#2 ------------------------------------------------------------ consensus_10271#1 ------------------------------------------------------------ consensus_10271#0 CGGCGCGCCCTCGGGCCACGCCGTGGTGATGCTGATGCCCGGCGGGCAGAACTCCATCAT 538 consensus_10271#2 ------------------------------------------------------------ consensus_10271#1 ------------------------------------------------------------ consensus_10271#0 CATCGTCGGCGGCGCCAACATGGAGGGGTGGGCCTCGGGGGTCGGCTCGGACGACCTGGA 598 consensus_10271#2 ------------------------------------------------------------ consensus_10271#1 ------------------------------------------------------------ consensus_10271#0 CCTGATCCGCCGGGCTGGCGTGCTGCTGCTGCAGCGGGAGATACCCGATTGGGTCAACGT 658 consensus_10271#2 ------------------------------------------------------------ consensus_10271#1 ------------------------------------------------------------ consensus_10271#0 GCAGGTTGCGCAGGCAGCAAAAGGTGCAGGTGTGCCTGTTATCTTGGACGCCGGTGGAAT 718 consensus_10271#2 ------------------------------------------------------------ consensus_10271#1 ------------------------------------------------------------ consensus_10271#0 GGAAGCTCCTGTCCCTGGGGAACTACTGAGCCTGGTGGATATTTTTAGTCCAAATGAAAC 778 consensus_10271#2 ------------------------------------------------------------ consensus_10271#1 ------------------------------------------------------------ consensus_10271#0 AGAGCTTGCACGTTTGACTGGGATGCCTACAGAAACATTTGAACAGATCAGTCGAGCTGC 838 consensus_10271#2 ------------------------------------------------------------ consensus_10271#1 ------------------------------------------------------------ consensus_10271#0 AGGAGCATGCCATAAAATGGGTGTGAAAGAAGTGCTGGTTAAACTCGGATCACAAGGATC 898 consensus_10271#2 ------------------------------------------------------------ consensus_10271#1 ------------------------------------------------------------ consensus_10271#0 TGCTTTATTTATTGAAGGGGGGGAGCCGATCAGGCAGCCGATAATTCCTGCCACAGAAGT 958 consensus_10271#2 ------------------------------------------------------------ consensus_10271#1 ------------------------------------------------------------ consensus_10271#0 TGTTGATACGACTGGTGCCGGTGACACTTTCACCTCAGCTTTTGCTGTAGCTCTAGTTGA 1018 consensus_10271#2 ------------------------------------------------------------ consensus_10271#1 ------------------------------------------------------------ consensus_10271#0 GGGTAAACCTAAGGAAGAGTGCATGAGATTTGCTGCTGCTGCTGCATCTCTATGTGTTCA 1078 consensus_10271#2 ------------------------------------------------------------ consensus_10271#1 ------------------------------------------------------------ consensus_10271#0 AGTAAAGGGAGCCATACCCAGCATGCCTGACCGAAAATCAGTAATGGACCTTCTGGAATC 1138 consensus_10271#2 ------------------------------------------------------------ consensus_10271#1 ------------------------------------------------------------ consensus_10271#0 TGTTCAGGTTGAATAACTGTAGATCTCATGATTGTTTCTCTTCAGCCTCCATTCATCCTC 1198 consensus_10271#2 ------------------------------------------------------------ consensus_10271#1 ------------------------------------------------------------ consensus_10271#0 AATAATGGGGCGCGCGGCCAAATTCGACGGATCCAATGAAGCTCCCATAGACCCTCATGG 1258 consensus_10271#2 ------------------------------------------------------------ consensus_10271#1 ------------------------------------------------------------ consensus_10271#0 CCTCATCTGCTCTGCTCATCCTCCAATAATGTGACAACCTTGGAGTGGAAAAACGCATTT 1318 consensus_10271#2 ------------------------------------------------------------ consensus_10271#1 ------------------------------------------------------------ consensus_10271#0 CCCGGGTGCCACTGCCATCCATAGTAAACGCACCCAACCCCCAAATAAAGAATGGACATT 1378 consensus_10271#2 ------------------------------------------------------------ consensus_10271#1 ------------------------------------------------------------ consensus_10271#0 TCACGCATCCATCCTGTTGCTGTAGGCCACTGTAAATACAATGAACAGTTTTCACACTGC 1438 consensus_10271#2 ------------------------------------------------------------ consensus_10271#1 ------------------------------------------------------------ consensus_10271#0 CCTGGAGCTATCAGACGGTGACACCGTGCTGTTACTAAAAAAAAAAAAAAA 1489 consensus_10271#2 --------------------------------------------------- consensus_10271#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||