These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10278#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1152 fasta sequence [TTTTTAACAGGAATGCCTTCTTTTCATCTTTCTTTTATTGTCTTAAGGGATACCAATGCCAAAACCGTTTCACCATATATTCCTCAAATGATTGATGCGATTACTTGTAGCTTCAAATGGCCTCGCACGGTCCATCATGACAAAGCCGTCACTCACCCTTCACCACCGGATTTGGTTCTTTGGCACCAAGCCCCTTGCTTGCCCTTCACCGCCGCATGGTCCATCGTGACCGAGCATTGCTTGTCCTTCACCGTCTTGCCATAGTAGTAACTTTGTATCCCACATCTTCAGTGTCGGGTCCCAAAACTAATGATTCGGTAACCGACTTATTAAAACTGTATCAAGCCCTGGATCAGTAGATTGATACAGGTTCAATAATATGGATCTTCATTGCATACATTTAATCAAGGCTCCAGAGGAGATGTTATTATAAAATAATAGGACATNTTAGAAGTTTGTGGCTAACTATTACAGTAGAAGCTATAGGATGAGCCAACTCTAATGTTTTGCTATAGACTTAAACTATCTAGTATATGCTTGAGAACTAAGTTAGAATGAGACTAACTTATATGATTGAACTCCCGGCTTCGGCAAGAACATCAAATGGACTCTTGCTCCAGCGCAAATAAATCCGAGATAGGCAACCTGATTATCCGATGCTCGAAATACCACAGGTTGCCATCCAAATATAATAGACTCTACTGTCAGTTCTTTATTTCTTTCTTCTTTTCTTCTTCTTCTTCGTTCGTTTCTTCTCTTCTCCTTTCCAGTCGAGTCACAGGGGAGAGAGGGAGAGAGGGTCGCCGGTGCTCCGGTGGCCGGGAGGTGGCGACGCCGGCGGCAAAGTGTGTTCCCGAGCGTCGCGTGTCCGGGGAGGGCGGTGTCCGGCAGGGGGAGTGAGAGAGGAGACCGGAACGGCGATGACAAAAGCTTGCCCCGGCCGGTTTGGGAAGTAACGGTGGTGGCTAATCTCGGAAGGGGAAAGGAAGGGGAAGGTTAGGGAATGGATTTGTCTCGTCGAGGCGAACGTATTGGCGCGAGGGCTTGGTCGGCAATGCTCCGACGAGGGAGATCGGCCGACGGCCGGCATGGGGAGGAGAGAGAGAAGAAGAGCTTGAGCTTGGATGTGTGTTTTCTACTCCTTCAGTCCAT] [+] EMBL CF321166 [TTTTTAACAGGAATGCCTTCTTTTCATCTTTCTTTTATTGTCTTAAGGGATACCAATGCCAAAACCGTTTCACCATATATTCCTCAAATGATTGATGCGATTACTTGTAGCTTCAAATGGCCTCGCACGGTCCATCATGACAAAGCCGTCACTCACCCTTCACCACCGGATTTGGTTCTTTGGCACCAAGCCCCTTGCTTGCCCTTCACCGCCGCATGGTCCATCGTGACCGAGCATTGCTTGTCCTTCACCGTCTTGCCATAGTAGTAACTTTGTATCCCACATCTTCAGTGTCGGGTCCCAAAACTAATGATTCGGTAACCGACTTATTAAAACTGTATCAAGCCCTGGATCAGTAGATTGATACAGGTTCAATAATATGGATCTTCATTGCATACATTTAATCAAGGCTCCAGAGGAGATGTTATTATAAAATAATAGGACATNTTAGAAGTTTGTGGCTAACTATTACAGTAGAAGCTATAGGATGAGCCAACTCTAATGTTTTGCTATAGACTTAAACTATCTAGTATATGCTTGAGAACTAAGTTAGAATGAGACTAACTTATATGATTGAACTCCCGGCTTCGGCAAGAACATCAAATGG ] [+] EMBL D43077 [ GCCTTCTTTTCATCTTTTTTTTATTGTCTTAAGGGATACCAATGCCAAAACCGTTTTACCATATATTTTTTAAATGATTGATGCGATTACTTGTAGCTTCAAATGGCCTCGCACGGTCCATCATGACAAAGCCGT ] [-] EMBL CF321165 [ TGAGAACTAAGTTAGAATGAGACTACTTTATATGATTGAACTCCCGGCTTCGGCAAGAACATCAAATGGACTCTTGCTCCAGCGCAAATAAATCCGAGATAGGCAACCTGATTATCCGATGCTCGAAATACCACAGGTTGCCATCCAAATATAATAGACTCTACTGTCAGTTCTTTATTTCTTTCTTCTTTTCTTCTTCTTCTTCGTTCGTTTCTTCTCTTCTCCTTTCCAGTCGAGTCACAGGGGAGAGAGGGAGAGAGGGTCGCCGGTGCTCCGGTGGCCGGGAGGTGGCGACGCCGGCGGCAAAGTGTGTTCCCGAGCGTCGCGTGTCCGGGGAGGGCGGTGTCCGGCAGGGGGAGTGAGAGAGGAGACCGGAACGGCGATGACAAAAGCTTGCCCCGGCCGGTTTGGGAAGTAACGGTGGTGGCTAATCTCGGAAGGGGAAAGGAAGGGGAAGGTTAGGGAATGGATTTGTCTCGTCGAGGCGAACGTATTGGCGCGAGGGCTTGGTCGGCAATGCTCCGACGAGGGAGATCGGCCGACGGCCGGCATGGGGAGGAGAGAGAGAAGAAGAGCTTGAGCTTGGATGTGTGTTTTCTACTCCTTCAGTCCAT] consensusID : consensus_10278#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1032 fasta sequence [TTTTTTTCAGCGGCAAATTTGCAGTTTGCATATTTATAATGGCTTATTCAAGTTAGGGGGTGAAACCGGTGGCATATACACCTCGACGTTGTATCCCTCTTAATAGTACGGCATTCCTAAACTCAAATATAAATAGGAAGATAATTATGTCAACAGGAATGCCTTCTTTTCATCTTTCTTTTATTGTCTTAAGGGATACCAATGCCAAAACCGTTTCACCATATATTCCTCAAATGATTGATGCGATTACTTGTAGCTTCAAATGGCCTCGCACGGTCCATCATGACAAAGCCGTCACTCACCCTTCACCACCGGATTTGGTTCTTTGGCACCAAGCCCCTTGCTTGCCCTTCACCGCCGCATGGTCCATCGTGACCGAGCATTGCTTGTCCTTCACCGTCTTGCCATAGTAGTAACTTTGTATCCCACATCTTCAGTGTCGGGTCCCAAAACTAATGATTCGGTAACCGACTTATTAAAACTGTATCAAGCCCTTGCTCCAGCGCAAATAAATCCGAGATAGGCAACCTGATTATCCGATGCTCGAAATACCACAGGTTGCCATCCCAAAA-TAATAGACTCTACTGTCAGTTCTTTATTTCTTTCTTCTTTTCTTCTTCTTCTTCGTTCGTTTCTTCTCTTCTCCTTTCCAGTCGAGTCACAGGGGAGAGAGGGAGAGAGGGTCGCCGGTGCTCCGGTGGCCGGGAGGTGGCGACGCCGGCGGCAAAGTGTGTTCCCGAGCGTCGCGTGTCCGGGGAGGGCGGTGTCCGGCAGGGGGAGTGAGAGAGGAGACCGGAACGGCGATGACAAAAGCTTGCCCCGGCCGGTTTGGGAAGTAACGGTGGTGGCTAATCTCGGAAGGGGGAAGGAAGGGGAAGGTTAGGGAATGGATTTGTCTCGTCGAGGCGAACGTATTGGCGCGAGGGCTTGGTCGGCAATGCTCCGACGAGGGAGATCGGCCGACGGCCGGCATGGGGAGGAGAGAGAGAAGAAGAGCTTGAGCTTGGATGTGTTTTCTACTCCTTCAGTCCA] [+] EMBL CF330480 [TTTTTTTCAGCGGCAAATTTGCAGTTTGCATATTTATAATGGCTTATTCAAGTTAGGGGGTGAAACCGGTGGCATATACACCTCGACGTTGTATCCCTCTTAATAGTACGGCATTCCTAAACTCAAATATAAATAGGAAGATAATTATGTCAACAGGAATGCCTTCTTTTCATCTTTCTTTTATTGTCTTAAGGGATACCAATGCCAAAACCGTTTCACCATATATTCCTCAAATGATTGATGCGATTACTTGTAGCTTCAAATGGCCTCGCACGGTCCATCATGACAAAGCCGTCACTCACCCTTCACCACCGGATTTGGTTCTTTGGCACCAAGCCCCTTGCTTGCCCTTCACCGCCGCATGGTCCATCGTGACCGAGCATTGCTTGTCCTTCACCGTCTTGCCATAGTAGTAACTTTGTATCCCACATCTTCAGTGTCGGGTCCCAAAACTAATGATTCGGTAACCGACTTATTAAAACTGTATCAAGCCCTTGCTCCAGCGCAAATAAATCCGAGATAGGCAACCTGATTATCCGATGCTCGAAATACCACAGGTTGCCATCCAAATA TA ] [-] EMBL CF330479 [ TAACTTTGTATCCCACATCTTCAGTGTCGGGTCCCAAAACTAATGATTCGGTAACCGACTTATTAAAACTGTATCAAGCCCTTGCTCCAGCGCAAATAAATCCGAGATAGGCAACCTGATTATCCGATGCTCGAAATACCACAGGTTGCCATCCCAAAA TAATAGACTCTACTGTCAGTTCTTTATTTCTTTCTTCTTTTCTTCTTCTTCTTCGTTCGTTTCTTCTCTTCTCCTTTCCAGTCGAGTCACAGGGGAGAGAGGGAGAGAGGGTCGCCGGTGCTCCGGTGGCCGGGAGGTGGCGACGCCGGCGGCAAAGTGTGTTCCCGAGCGTCGCGTGTCCGGGGAGGGCGGTGTCCGGCAGGGGGAGTGAGAGAGGAGACCGGAACGGCGATGACAAAAGCTTGCCCCGGCCGGTTTGGGAAGTAACGGTGGTGGCTAATCTCGGAAGGGGGAAGGAAGGGGAAGGTTAGGGAATGGATTTGTCTCGTCGAGGCGAACGTATTGGCGCGAGGGCTTGGTCGGCAATGCTCCGACGAGGGAGATCGGCCGACGGCCGGCATGGGGAGGAGAGAGAGAAGAAGAGCTTGAGCTTGGATGTGTTTTCTACTCCTTCAGTCCA] [-] EMBL CF314257 [ CAGCGCAAATAAATCCGAGATAGGCAACCTGATTATCCGATGCTCGAAATACCACAGGTTGCCATCCCAAAATTAATAGACTCTACTGTCAGTTCTTTATTTCTTTCTTCTTTTCTTCTTCTTCTTCGTTCGTTTCTTCTCTTCTCCTTTCCAGTCGAGTCACAGGGGAGAGAGGGAGAGAGGGTCGCCGGTGCTCCGGTGGCCGGGAGGTGGCGACGCCGGCGGCAAAGTGTGTTCCCGAGCGTCGCGTGTCCGGGGAGGGCGGTGTCCGGCAGGGGGAGTGAGAGAGGAGACCGGAACGGCGATGACAAAAGCTTGCCCCGGCCGGTTTGGGAAGTAACGGTGGTGGCTAATCTCGGAAGGGGAAAGGAAGGGGAAGGTTAGGGAATGGATTTGTCTCGTCGAGGCGAACGTATTGGCGCGAGGGCTTAGTCGGCAATGCTCCGACGAGGGAGATCGGCCGACGGCCGGCATGGGGAGGAGAGAGAGAAGAAGAGCTTGAGCTTGG ] consensusID : consensus_10278#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 241 fasta sequence [TTCTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACATTTAATCAAGGCTCCAGAGGAGATGTTATTATAAAATAATAGGACATTTAGAAGTTTGTGGCTAACTATTACAGTAGAAGCTATAGGATGAGCCAACTCTAATGTTTTGCTATAGACTTAAACTATCTAGTATATGCTTGAGAACTAAGTTAG] [-] EMBL CF309586 [TTCTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACATTTAATCAAGGCTCCAGAGGAGATGTTATTATAAAATAATAGGACATTTAGAAGTTTGTGGCTAACTATTACAGTAGAAGCTATAGGATGAGCCAACTCTAATGTTTTGCTATAGACTTAAACTATCTAGTATATGCTTGAGAACTAAGTTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10278#0 ------------------------------------------------------------ consensus_10278#1 TTTTTTTCAGCGGCAAATTTGCAGTTTGCATATTTATAATGGCTTATTCAAGTTAGGGGG 60 consensus_10278#2 ------------------------------------------------------------ consensus_10278#0 ------------------------------------------------------------ consensus_10278#1 TGAAACCGGTGGCATATACACCTCGACGTTGTATCCCTCTTAATAGTACGGCATTCCTAA 120 consensus_10278#2 ------------------------------------------------------------ consensus_10278#0 --------------------------TTTTTAACAGGAATGCCTTCTTTTCATCTTTCTT 34 consensus_10278#1 ACTCAAATATAAATAGGAAGATAATTATGTCAACAGGAATGCCTTCTTTTCATCTTTCTT 180 consensus_10278#2 ------------------------------------------------------------ consensus_10278#0 TTATTGTCTTAAGGGATACCAATGCCAAAACCGTTTCACCATATATTCCTCAAATGATTG 94 consensus_10278#1 TTATTGTCTTAAGGGATACCAATGCCAAAACCGTTTCACCATATATTCCTCAAATGATTG 240 consensus_10278#2 ------------------------------------------------------------ consensus_10278#0 ATGCGATTACTTGTAGCTTCAAATGGCCTCGCACGGTCCATCATGACAAAGCCGTCACTC 154 consensus_10278#1 ATGCGATTACTTGTAGCTTCAAATGGCCTCGCACGGTCCATCATGACAAAGCCGTCACTC 300 consensus_10278#2 ------------------------------------------------------------ consensus_10278#0 ACCCTTCACCACCGGATTTGGTTCTTTGGCACCAAGCCCCTTGCTTGCCCTTCACCGCCG 214 consensus_10278#1 ACCCTTCACCACCGGATTTGGTTCTTTGGCACCAAGCCCCTTGCTTGCCCTTCACCGCCG 360 consensus_10278#2 ------------------------------------------------------------ consensus_10278#0 CATGGTCCATCGTGACCGAGCATTGCTTGTCCTTCACCGTCTTGCCATAGTAGTAACTTT 274 consensus_10278#1 CATGGTCCATCGTGACCGAGCATTGCTTGTCCTTCACCGTCTTGCCATAGTAGTAACTTT 420 consensus_10278#2 ------------------------------------------------------------ consensus_10278#0 GTATCCCACATCTTCAGTGTCGGGTCCCAAAACTAATGATTCGGTAACCGACTTATTAAA 334 consensus_10278#1 GTATCCCACATCTTCAGTGTCGGGTCCCAAAACTAATGATTCGGTAACCGACTTATTAAA 480 consensus_10278#2 ------------------------------------------------------------ consensus_10278#0 ACTGTATCAAGCCCTGGATCAGTAGATTGATACAGGTTCAATAATATGGATCTTCATTGC 394 consensus_10278#1 ACTGTATCAAGCCCT--------------------------------------------- 495 consensus_10278#2 ------------------------------------------------------------ consensus_10278#0 ATACATTTAATCAAGGCTCCAGAGGAGATGTTATTATAAAATAATAGGACATNTTAGAAG 454 consensus_10278#1 ------------------------------------------------------------ consensus_10278#2 ------------------------------------------------------------ consensus_10278#0 TTTGTGGCTAACTATTACAGTAGAAGCTATAGGATGAGCCAACTCTAATGTTTTGCTATA 514 consensus_10278#1 ------------------------------------------------------------ consensus_10278#2 ------------------------------------------------------------ consensus_10278#0 GACTTAAACTATCTAGTATATGCTTGAGAACTAAGTTAGAATGAGACTAACTTATATGAT 574 consensus_10278#1 ------------------------------------------------------------ consensus_10278#2 ------------------------------------------------------------ consensus_10278#0 TGAACTCCCGGCTTCGGCAAGAACATCAAATGGACTCTTGCTCCAGCGCAAATAAATCCG 634 consensus_10278#1 --------------------------------------TGCTCCAGCGCAAATAAATCCG 517 consensus_10278#2 ------------------------------------------------------------ consensus_10278#0 AGATAGGCAACCTGATTATCCGATGCTCGAAATACCACAGGTTGCCATCCAAATATAATA 694 consensus_10278#1 AGATAGGCAACCTGATTATCCGATGCTCGAAATACCACAGGTTGCCATCCCAAAATAATA 577 consensus_10278#2 ------------------------------------------TTCTTTTGTTTTTTTTTT 18 * * * * * consensus_10278#0 GACTCTACTGTCAGTTCTTTATTTCTTTCTTCTTTTCTTCTTCTTCTTCGTTCGTTTCTT 754 consensus_10278#1 GACTCTACTGTCAGTTCTTTATTTCTTTCTTCTTTTCTTCTTCTTCTTCGTTCGTTTCTT 637 consensus_10278#2 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 78 * * * * ** *** *** *** ** **** ** ** ** ** ** *** ** consensus_10278#0 CTCTTCTCCTTTCCAGTCGAGTCACAGGGGAGAGAGGGAGAGAGGGTCGCCGGTGCTCCG 814 consensus_10278#1 CTCTTCTCCTTTCCAGTCGAGTCACAGGGGAGAGAGGGAGAGAGGGTCGCCGGTGCTCCG 697 consensus_10278#2 TTTTTTTACATTTAATCAAGGCTCCAGAGGAGATGTTATTATAAAATAATAGGACATTTA 138 * ** * * ** * * *** ***** * * * ** * consensus_10278#0 GTGGCCGGGAGGTGGCGACGCCGGCGGCAAAGTGTGTTCCCGAGCGTCGCGTGTCCGGGG 874 consensus_10278#1 GTGGCCGGGAGGTGGCGACGCCGGCGGCAAAGTGTGTTCCCGAGCGTCGCGTGTCCGGGG 757 consensus_10278#2 GAAGTTTGTGGCTAACTATTACAGTAG-AAGCTATAGGATGAGCCAACTCTAATGTTTTG 197 * * * * * * * * * * ** * * * * * * * consensus_10278#0 AGGGCGGTGTCCGGCAGGGGGAGTGAGAGAGGAGACCGGAACGGCGATGACAAAAGCTTG 934 consensus_10278#1 AGGGCGGTGTCCGGCAGGGGGAGTGAGAGAGGAGACCGGAACGGCGATGACAAAAGCTTG 817 consensus_10278#2 CTATAGACTTAAACTATCTAGTATATGCTTGAGAACTAAGTTAG---------------- 241 * * * * * * * ** * consensus_10278#0 CCCCGGCCGGTTTGGGAAGTAACGGTGGTGGCTAATCTCGGAAGGGGAAAGGAAGGGGAA 994 consensus_10278#1 CCCCGGCCGGTTTGGGAAGTAACGGTGGTGGCTAATCTCGGAAGGGGGAAGGAAGGGGAA 877 consensus_10278#2 ------------------------------------------------------------ consensus_10278#0 GGTTAGGGAATGGATTTGTCTCGTCGAGGCGAACGTATTGGCGCGAGGGCTTGGTCGGCA 1054 consensus_10278#1 GGTTAGGGAATGGATTTGTCTCGTCGAGGCGAACGTATTGGCGCGAGGGCTTGGTCGGCA 937 consensus_10278#2 ------------------------------------------------------------ consensus_10278#0 ATGCTCCGACGAGGGAGATCGGCCGACGGCCGGCATGGGGAGGAGAGAGAGAAGAAGAGC 1114 consensus_10278#1 ATGCTCCGACGAGGGAGATCGGCCGACGGCCGGCATGGGGAGGAGAGAGAGAAGAAGAGC 997 consensus_10278#2 ------------------------------------------------------------ consensus_10278#0 TTGAGCTTGGATGTGTGTTTTCTACTCCTTCAGTCCAT 1152 consensus_10278#1 TTGAGCTTGGATGTG--TTTTCTACTCCTTCAGTCCA- 1032 consensus_10278#2 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||