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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10279#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1417 fasta sequence
[AATCGAAGAGCGCCTCCTCCACGCCCCTAGGGTTTCCTCCCCCTCCCCCCTCGCGGCCTCTCGCCGGCGGCCGCCCACCTCCGGGGATCCTCTCTCCGGCGCGGAGCTTCCTCATCCTGCCCGTCGCCCGCCCCAATTGCCCGGCCGCCGCCTCCGCCGCTGCTGCAAGGGAATCGCCCGGCGCCGCCGTTCCCCCCCGATCGTCGTACCGTTGGCTGGTTGCGTGCTGCTGCGTCGATCTCGTGGGCGGGTCACCCGGAGGCGGCATTTTAGCGGCGGGACTCCGCGTGGTACGCTTCCCTTTGCCCTTTTAGCGCAGGCTTGTTTTGGCGATTGGTCACACTGTAGAAATCAAATTCCAAGTGAAGTTGCCAAACAATTACCTATCTGCTGTTATTGCTTCCATGGCAACCAACGAGAACCTCCCACCAAATGTCGTTAGGCAATTGGCTAAGGAACTGAAGAGTCTTGATGAGTCACCTCCAGAAGGGATTAAAGTTATTGTTAATGACGATGACTTCACCACCATTTTTGCTGATATTGAGGGACCTGCTGGAACTCCATATGAGAATGGAGTATTCCGTATGAAGCTATTGTTGTCTCGTGACTTCCCTCAGTCTCCTCCTAAAGGATTCTTCTTGACAAAAATTTTCCATCCAAATATAGCAACTAGTGGTGAAATATGTGTTAACACACTGAAGAAGGATTGGAATCCTAGCCTTGGATTAAGACATGTTCTGCTGGTAGTGAGATGCCTTCTGATAGAACCATTTCCTGAATCTGCCCTTAATGAGCAAGCTGGGAAATTGTTGCTTGAGAACTATGAGGAGTATGCACGGCATGCAAGGCTATACACTAGCATCCATGCACTTAAACCCAAGAATAAGACCAAGAGCGGGACTATTTCTGAATCAACCACAGCTCTAAATGTGGATCAGTCAAACAATGCTGTCAGCAAGAACACACCATTGGGTCCAGCAGCATTATCTACCTCCACTGCAAATAAAGCATTTGGCTCTAATTTGCAGGATCAGAATGCTGCTCCTTCTGATCCTGCCTTGGGAGCATCAGCAGTACCCAAGAAGGATG-GGCT-ACATG-CT-GTGAAAG-CTCCGGTTG-AG-AAG-AAG-AAGATTG-ATGCGAGGAAGAAGAGCTTG-AAGAGACTATAAGTAAAACAGCCTTGGAAAAACTGAGGCTGTTAGTTGTAGCTAATAATCTAGATTTCTTCATAAGTTCCAGATCACCAGATGCATAGTAAAATCGATAATAATGTGGGGGCATCTGATGCAATATGAAACGGCGTTTGGGTTAAACAGAGAAGAATGTGTGTTGTGACTGTTGGTGTACCATACTGTCTGTGCAATATCAATTGTTCGGAAGAATACTTGTCTTTTCTGTCGTTGATTGCCCCTGTGAAAAAAAA]
[+] EMBL AK058614 [AATCGAAGAGCGCCTCCTCCACGCCCCTAGGGTTTCCTCCCCCTCCCCCCTCGCGGCCTCTCGCCGGCGGCCGCCCACCTCCGGGGATCCTCTCTCCGGCGCGGAGCTTCCTCATCCTGCCCGTCGCCCGCCCCAATTGCCCGGCCGCCGCCTCCGCCGCTGCTGCAAGGGAATCGCCCGGCGCCGCCGTTCCCCCCCGATCGTCGTACCGTTGGCTGGTTGCGTGCTGCTGCGTCGATCTCGTGGGCGGGTCACCCGGAGGCGGCATTTTAGCGGCGGGACTCCGCGTGGTACGCTTCCCTTTGCCCTTTTAGCGCAGGCTTGTTTTGGCGATTGGTCACACTGTAGAAATCAAATTCCAAGTGAAGTTGCCAAACAATTACCTATCTGCTGTTATTGCTTCCATGGCAACCAACGAGAACCTCCCACCAAATGTCGTTAGGCAATTGGCTAAGGAACTGAAGAGTCTTGATGAGTCACCTCCAGAAGGGATTAAAGTTATTGTTAATGACGATGACTTCACCACCATTTTTGCTGATATTGAGGGACCTGCTGGAACTCCATATGAGAATGGGGTATTCCGTATGAAGCTATTGTTGTCTCGTGACTCCCCTCAGTCTCCTCCTAAAGGATTCTTCTTGACAAAAATTTTCCATCCAAATATAGCAACTAGTGGTGAAATATGTGTTAACACACTGAAGAAGGATTGGAATCCTAGCCTTGGATTAAGACATGTTCTGCTGGTAGTGAGATGCCTTCTGATAGAACCATTTCCTGAATCTGCCCTTAATGAGCAAGCTGGGAAATTGTTGCTTGAGAACTATGAGGAGTATGCACGGCATGCAAGGCTATACACTAGCATCCATGCACTTAAACCCAAGAATAAGACCAAGAGCGGGACTATTTCTGAATCAACCACAGCTCTAAATGTGGATCAGTCAAACAATGCTGTCAGCAAGAACACACCATTGGGTCCAGCAGCATTATCTACCTCCACTGCAAATAAAGCATTTGGCTCTAATTTGCAGGATCAGAATGCTGCTCCTTCTGATCCTGCCTTGGGAGCATCAGCAGTACCCAAGAAGGATG GGCT ACATG CT GTGAAAG CTCCGGTTG AG AAG AAG AAGATTG ATGCGAGGAAGAAGAGCTTG AAGAGACTATAAGTAAAACAGCCTTGGAAAAACTGAGGCTGTTAGTTGTAGCTAATAATCTAGATTTCTTCATAAGTTCCAGATCACCAGATGCATAGTAAAATCGATAATAATGTGGGGGCATCTGATGCAATATGAAACGGCGTTTGGGTTAAACAGAGAAGAATGTGTGTTGTGACTGTTGGTGTACCATACTGTCTGTGCAATATC ]
[+] EMBL AK121998 [ TCCCCCTCCCCCCTCGCGGCCTCTCGCCGGCGGCCGCCCACCTCCGGGGATCCTCTCTCCGGCGCGGAGCTTCCTCATCCTGCCCGTCGCCCGCCCCAATTGCCCGGCCGCCGCCTCCGCCGCTGCTGCAAGGGAATCGCCCGGCGCCGCCGTTCCCCCCCGATCGTCGTACCGTTGGCTGGTTGCGTGCTGCTGCGTCGATCTCGTGGGCGGGTCACCCGGAGGCGGCATTTTAGCGGCGGGACTCCGCGTGGTACGCTTCCCTTTGCCCTTTTAGCGCAGGCTTGTTTTGGCGATTGATCACACTGTAGAAATCAAATTCCAAGTGAAGTTGCCAAACAATTACCTATCTGCTGTTATTGCTTCCATGGCAACCAACGAGAACCTCCCACCAAATGTCGTTAGGCAATTGGCTAAGGAACTGAAGAGTCTTGATGGGTCACCTCCAGAAGGGATTAAAGTTATTGTTAATGACGATGACTTCACCACCATTTTTGCTGATATTGAGGGACCTGCTGGAACTCCATATGAGAATGGAGTATTCCGTATGAAGCTATTGTTGTCTCGTGACTTCCCTCAGTCTCCTCCTAAAGGATTCTTCTTGACAAAAATTTTCCATCCAAATATAGCAACTAGTGGTGAAATATGTGTTAACACACTGAAGAAGGATTGGAATCCTAGCCTTGGATTAAGACATGTTCTGCTGGTAGTGAGATGCCTTCTGATAGAACCATTTCCTGAATCTGCCCTTAATGAGCAAGCTGGGAAATTGTTGCTTGAGAACTATGAGGAGTATGCACGGCATGCAAGGCTATACACTAGCATCCATGCACTTAAACCCAAGAATAAGACCAAGAGCGGGACTATTTCTGAATCAACCACAGCTCTAAATGTGGATCAGTCAAACAATGCTGTCAGCAAGAACACACCATTGGGTCCAGCAGCATTATCTACCTCCACTGCAAATAAAGCATTTGGCTCTAATTTGCAGGATCAGAATGCTGCTCCTTCTGATCCTGCCTTGGGAGCATCAGCAGTACCCAAGAAGGATG GGCT ACATG CT GTGAAAG CTCCGGTTG AG AAG AAG AAGATTG ATGCGAGGAAGAAGAGCTTG AAGAGACTATAAGTAAAACAGCCTTGGAAAAACTGAGGCTGTTAGTTGTAGCTAATAATCTAGATTTCTTCATAAGTTCCAGATCACCAGATGCATAGTAAAATCGATAATAATGTGGGGGCATCTGATGCAATATGAAACGGCGTTTGGGTTAAACAGAGAAGAATGTGTGTTGTGACTGTTGGTGTACCATACTGTCTGTGCAATATC ]
[+] EMBL OSS1306A [ AGTGAAGTTGCCAAACAATTACCTATCTGCTGTTATTGCTTCCATGGCAACCAACGAGAACCTCCCACCAAATGTCGTTAGGCAATTGGCTAAGGAACTGAAGAGTCTTGATGAGTCACCTCCAGAAGGGATTAAAGTTATTGTTAATGACGATGACTTCACCACCATTTTTGCTGATATTGAGGGACCTGCTGGAACTCCATATGAGAATGGAGTATTCCGTATGAAGCTATTGTTGTCTCGTGACTTCCCTCAG ]
[-] EMBL BI305954 [ ATCAGTCAAACAATGCTGTCAGCAAGAACACACCATTGGGTCCAGCAGCATTATCTACCTCCACTGCAAATAAAGCATTTGGCTCTAATTTGCAGGATCAGAATGCTGCTCCTTCTGATCCTGCCTTGGGAGCATCAGCAGTACCCAAGAAGGATG GGCT ACATG CT GTGAAAG CTCCGGTTG AG AAG AAG AAGATTG ATGCGAGGAAGAAGAGCTTG AAGAGACTATAAGTAAAACAGCCTTGGAAAAACTGAGGCTGTTAGTTGTAGCTAATAATCTAGATTTCTTCATAAGTTCCAGATCACCAGATGCATAGTAAAATCGATAATAATGTGGGGGCATTTGATGCAATATGAAACGGCGTTTGGGTTAAACAGAGAAGAATGTGTGTTGTGACTGTTGGTGTACCATACTGTCTGTGCAATATCAATTGTTCGGAAGAATACT ]
[+] EMBL AU033023 [ AGGATGNGGCTAACATGTCTNTTGAAAGTCTCCGGTTGTAGTAAGNAAGTAAGATTGTATGCGAGGAAGAAGAGCTTGTAAGNGACTATAAGTAAACCAGCCTTGGAAAAANTGAGGCTGTTAGTTGTAGCTAATAATCTAGATTTCTTCATAAGTTCCAGATCACCAGATGCATAGTAAAATCGATAATAATGTGGGGGCATCTGATGCAATATGAAACGGCGTTTGGGTTAAACAGAGAAGAATGTGTGTTGTGACTGTTGGTGTACCATACTGTCTGTGCAATATCAATTGTTCGGAAGAATACTTGTCTTTTCTGTCGTTGATTGCCCCTGTGAAAAAAAA]
consensusID : consensus_10279#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 155 fasta sequence
[TTANTAAATTCGATAATAATGTGGGGGCATNTGATGCAATATGAAACGGCGTTTGGGTTAAACAGNGAAGAATGTGTGTTGTNACTGTTGGTGTACCATNCTGTNTGTGCAATATNAATTGTTCGGAAANAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU091807 [TTANTAAATTCGATAATAATGTGGGGGCATNTGATGCAATATGAAACGGCGTTTGGGTTAAACAGNGAAGAATGTGTGTTGTNACTGTTGGTGTACCATNCTGTNTGTGCAATATNAATTGTTCGGAAANAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_10279#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 141 fasta sequence
[GGGATCCTCATCTCCGGCGCGGAGCTTCCTCATCCGGCCCGGCGCCCGCCCAATTGCCCGGCGCGCCTCCGCCGTGCTGCAAGGGAATCGCCCGGCGCCGCCGTATCCCACCCCGAAATCGTCGATACCGTTAGGCTGGAT]
[+] EMBL BU667132 [GGGATCCTCATCTCCGGCGCGGAGCTTCCTCATCCGGCCCGGCGCCCGCCCAATTGCCCGGCGCGCCTCCGCCGTGCTGCAAGGGAATCGCCCGGCGCCGCCGTATCCCACCCCGAAATCGTCGATACCGTTAGGCTGGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10279#0 AATCGAAGAGCGCCTCCTCCACGCCCCTAGGGTTTCCTCCCCCTCCCCCCTCGCGGCCTC 60
consensus_10279#2 ------------------------------------------------------------
consensus_10279#1 ------------------------------------------------------------
consensus_10279#0 TCGCCGGCGGCCGCCCACCTCCGGGGATCCTC-TCTCCGGCGCGGAGCTTCCTCATCCTG 119
consensus_10279#2 -----------------------GGGATCCTCATCTCCGGCGCGGAGCTTCCTCATCCGG 37
consensus_10279#1 ---------------------TTANTAAATTCGATAATAATGTGGGGGCATNTGATGCAA 39
* ** * ** * * ** *
consensus_10279#0 CCCGTCGCC-CGCCCCAATTGCCCGGCCGC-CGCCTCCGCCGCTGCTGCAAGGGAATCGC 177
consensus_10279#2 CCCGGCGCC-CGCCC-AATTGCCCGGCG---CGCCTCCGCCG-TGCTGCAAGGGAATCGC 91
consensus_10279#1 TATGAAACGGCGTTTGGGTTAAACAGNGAAGAATGTGTGTTGTNACTGTTGGTGTACCAT 99
* * ** ** * * * * * *** * * * *
consensus_10279#0 CCGGCGC-CGCCGTTCC--CCCCC----GATCGTCG-TACCGTT-GGCTGGTTGCGTGCT 228
consensus_10279#2 CCGGCGC-CGCCGTATC--CCACCCCGAAATCGTCGATACCGTTAGGCTGGAT------- 141
consensus_10279#1 NCTGTNTGTGCAATATNAATTGTTCGGAAANAAAAAAAAAAAAAAAAAAAAAAAAA---- 155
* * ** * * *
consensus_10279#0 GCTGCGTCGATCTCGTGGGCGGGTCACCCGGAGGCGGCATTTTAGCGGCGGGACTCCGCG 288
consensus_10279#2 ------------------------------------------------------------
consensus_10279#1 ------------------------------------------------------------
consensus_10279#0 TGGTACGCTTCCCTTTGCCCTTTTAGCGCAGGCTTGTTTTGGCGATTGGTCACACTGTAG 348
consensus_10279#2 ------------------------------------------------------------
consensus_10279#1 ------------------------------------------------------------
consensus_10279#0 AAATCAAATTCCAAGTGAAGTTGCCAAACAATTACCTATCTGCTGTTATTGCTTCCATGG 408
consensus_10279#2 ------------------------------------------------------------
consensus_10279#1 ------------------------------------------------------------
consensus_10279#0 CAACCAACGAGAACCTCCCACCAAATGTCGTTAGGCAATTGGCTAAGGAACTGAAGAGTC 468
consensus_10279#2 ------------------------------------------------------------
consensus_10279#1 ------------------------------------------------------------
consensus_10279#0 TTGATGAGTCACCTCCAGAAGGGATTAAAGTTATTGTTAATGACGATGACTTCACCACCA 528
consensus_10279#2 ------------------------------------------------------------
consensus_10279#1 ------------------------------------------------------------
consensus_10279#0 TTTTTGCTGATATTGAGGGACCTGCTGGAACTCCATATGAGAATGGAGTATTCCGTATGA 588
consensus_10279#2 ------------------------------------------------------------
consensus_10279#1 ------------------------------------------------------------
consensus_10279#0 AGCTATTGTTGTCTCGTGACTTCCCTCAGTCTCCTCCTAAAGGATTCTTCTTGACAAAAA 648
consensus_10279#2 ------------------------------------------------------------
consensus_10279#1 ------------------------------------------------------------
consensus_10279#0 TTTTCCATCCAAATATAGCAACTAGTGGTGAAATATGTGTTAACACACTGAAGAAGGATT 708
consensus_10279#2 ------------------------------------------------------------
consensus_10279#1 ------------------------------------------------------------
consensus_10279#0 GGAATCCTAGCCTTGGATTAAGACATGTTCTGCTGGTAGTGAGATGCCTTCTGATAGAAC 768
consensus_10279#2 ------------------------------------------------------------
consensus_10279#1 ------------------------------------------------------------
consensus_10279#0 CATTTCCTGAATCTGCCCTTAATGAGCAAGCTGGGAAATTGTTGCTTGAGAACTATGAGG 828
consensus_10279#2 ------------------------------------------------------------
consensus_10279#1 ------------------------------------------------------------
consensus_10279#0 AGTATGCACGGCATGCAAGGCTATACACTAGCATCCATGCACTTAAACCCAAGAATAAGA 888
consensus_10279#2 ------------------------------------------------------------
consensus_10279#1 ------------------------------------------------------------
consensus_10279#0 CCAAGAGCGGGACTATTTCTGAATCAACCACAGCTCTAAATGTGGATCAGTCAAACAATG 948
consensus_10279#2 ------------------------------------------------------------
consensus_10279#1 ------------------------------------------------------------
consensus_10279#0 CTGTCAGCAAGAACACACCATTGGGTCCAGCAGCATTATCTACCTCCACTGCAAATAAAG 1008
consensus_10279#2 ------------------------------------------------------------
consensus_10279#1 ------------------------------------------------------------
consensus_10279#0 CATTTGGCTCTAATTTGCAGGATCAGAATGCTGCTCCTTCTGATCCTGCCTTGGGAGCAT 1068
consensus_10279#2 ------------------------------------------------------------
consensus_10279#1 ------------------------------------------------------------
consensus_10279#0 CAGCAGTACCCAAGAAGGATGGGCTACATGCTGTGAAAGCTCCGGTTGAGAAGAAGAAGA 1128
consensus_10279#2 ------------------------------------------------------------
consensus_10279#1 ------------------------------------------------------------
consensus_10279#0 TTGATGCGAGGAAGAAGAGCTTGAAGAGACTATAAGTAAAACAGCCTTGGAAAAACTGAG 1188
consensus_10279#2 ------------------------------------------------------------
consensus_10279#1 ------------------------------------------------------------
consensus_10279#0 GCTGTTAGTTGTAGCTAATAATCTAGATTTCTTCATAAGTTCCAGATCACCAGATGCATA 1248
consensus_10279#2 ------------------------------------------------------------
consensus_10279#1 ------------------------------------------------------------
consensus_10279#0 GTAAAATCGATAATAATGTGGGGGCATCTGATGCAATATGAAACGGCGTTTGGGTTAAAC 1308
consensus_10279#2 ------------------------------------------------------------
consensus_10279#1 ------------------------------------------------------------
consensus_10279#0 AGAGAAGAATGTGTGTTGTGACTGTTGGTGTACCATACTGTCTGTGCAATATCAATTGTT 1368
consensus_10279#2 ------------------------------------------------------------
consensus_10279#1 ------------------------------------------------------------
consensus_10279#0 CGGAAGAATACTTGTCTTTTCTGTCGTTGATTGCCCCTGTGAAAAAAAA 1417
consensus_10279#2 -------------------------------------------------
consensus_10279#1 -------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||