These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10279#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1417 fasta sequence [AATCGAAGAGCGCCTCCTCCACGCCCCTAGGGTTTCCTCCCCCTCCCCCCTCGCGGCCTCTCGCCGGCGGCCGCCCACCTCCGGGGATCCTCTCTCCGGCGCGGAGCTTCCTCATCCTGCCCGTCGCCCGCCCCAATTGCCCGGCCGCCGCCTCCGCCGCTGCTGCAAGGGAATCGCCCGGCGCCGCCGTTCCCCCCCGATCGTCGTACCGTTGGCTGGTTGCGTGCTGCTGCGTCGATCTCGTGGGCGGGTCACCCGGAGGCGGCATTTTAGCGGCGGGACTCCGCGTGGTACGCTTCCCTTTGCCCTTTTAGCGCAGGCTTGTTTTGGCGATTGGTCACACTGTAGAAATCAAATTCCAAGTGAAGTTGCCAAACAATTACCTATCTGCTGTTATTGCTTCCATGGCAACCAACGAGAACCTCCCACCAAATGTCGTTAGGCAATTGGCTAAGGAACTGAAGAGTCTTGATGAGTCACCTCCAGAAGGGATTAAAGTTATTGTTAATGACGATGACTTCACCACCATTTTTGCTGATATTGAGGGACCTGCTGGAACTCCATATGAGAATGGAGTATTCCGTATGAAGCTATTGTTGTCTCGTGACTTCCCTCAGTCTCCTCCTAAAGGATTCTTCTTGACAAAAATTTTCCATCCAAATATAGCAACTAGTGGTGAAATATGTGTTAACACACTGAAGAAGGATTGGAATCCTAGCCTTGGATTAAGACATGTTCTGCTGGTAGTGAGATGCCTTCTGATAGAACCATTTCCTGAATCTGCCCTTAATGAGCAAGCTGGGAAATTGTTGCTTGAGAACTATGAGGAGTATGCACGGCATGCAAGGCTATACACTAGCATCCATGCACTTAAACCCAAGAATAAGACCAAGAGCGGGACTATTTCTGAATCAACCACAGCTCTAAATGTGGATCAGTCAAACAATGCTGTCAGCAAGAACACACCATTGGGTCCAGCAGCATTATCTACCTCCACTGCAAATAAAGCATTTGGCTCTAATTTGCAGGATCAGAATGCTGCTCCTTCTGATCCTGCCTTGGGAGCATCAGCAGTACCCAAGAAGGATG-GGCT-ACATG-CT-GTGAAAG-CTCCGGTTG-AG-AAG-AAG-AAGATTG-ATGCGAGGAAGAAGAGCTTG-AAGAGACTATAAGTAAAACAGCCTTGGAAAAACTGAGGCTGTTAGTTGTAGCTAATAATCTAGATTTCTTCATAAGTTCCAGATCACCAGATGCATAGTAAAATCGATAATAATGTGGGGGCATCTGATGCAATATGAAACGGCGTTTGGGTTAAACAGAGAAGAATGTGTGTTGTGACTGTTGGTGTACCATACTGTCTGTGCAATATCAATTGTTCGGAAGAATACTTGTCTTTTCTGTCGTTGATTGCCCCTGTGAAAAAAAA] [+] EMBL AK058614 [AATCGAAGAGCGCCTCCTCCACGCCCCTAGGGTTTCCTCCCCCTCCCCCCTCGCGGCCTCTCGCCGGCGGCCGCCCACCTCCGGGGATCCTCTCTCCGGCGCGGAGCTTCCTCATCCTGCCCGTCGCCCGCCCCAATTGCCCGGCCGCCGCCTCCGCCGCTGCTGCAAGGGAATCGCCCGGCGCCGCCGTTCCCCCCCGATCGTCGTACCGTTGGCTGGTTGCGTGCTGCTGCGTCGATCTCGTGGGCGGGTCACCCGGAGGCGGCATTTTAGCGGCGGGACTCCGCGTGGTACGCTTCCCTTTGCCCTTTTAGCGCAGGCTTGTTTTGGCGATTGGTCACACTGTAGAAATCAAATTCCAAGTGAAGTTGCCAAACAATTACCTATCTGCTGTTATTGCTTCCATGGCAACCAACGAGAACCTCCCACCAAATGTCGTTAGGCAATTGGCTAAGGAACTGAAGAGTCTTGATGAGTCACCTCCAGAAGGGATTAAAGTTATTGTTAATGACGATGACTTCACCACCATTTTTGCTGATATTGAGGGACCTGCTGGAACTCCATATGAGAATGGGGTATTCCGTATGAAGCTATTGTTGTCTCGTGACTCCCCTCAGTCTCCTCCTAAAGGATTCTTCTTGACAAAAATTTTCCATCCAAATATAGCAACTAGTGGTGAAATATGTGTTAACACACTGAAGAAGGATTGGAATCCTAGCCTTGGATTAAGACATGTTCTGCTGGTAGTGAGATGCCTTCTGATAGAACCATTTCCTGAATCTGCCCTTAATGAGCAAGCTGGGAAATTGTTGCTTGAGAACTATGAGGAGTATGCACGGCATGCAAGGCTATACACTAGCATCCATGCACTTAAACCCAAGAATAAGACCAAGAGCGGGACTATTTCTGAATCAACCACAGCTCTAAATGTGGATCAGTCAAACAATGCTGTCAGCAAGAACACACCATTGGGTCCAGCAGCATTATCTACCTCCACTGCAAATAAAGCATTTGGCTCTAATTTGCAGGATCAGAATGCTGCTCCTTCTGATCCTGCCTTGGGAGCATCAGCAGTACCCAAGAAGGATG GGCT ACATG CT GTGAAAG CTCCGGTTG AG AAG AAG AAGATTG ATGCGAGGAAGAAGAGCTTG AAGAGACTATAAGTAAAACAGCCTTGGAAAAACTGAGGCTGTTAGTTGTAGCTAATAATCTAGATTTCTTCATAAGTTCCAGATCACCAGATGCATAGTAAAATCGATAATAATGTGGGGGCATCTGATGCAATATGAAACGGCGTTTGGGTTAAACAGAGAAGAATGTGTGTTGTGACTGTTGGTGTACCATACTGTCTGTGCAATATC ] [+] EMBL AK121998 [ TCCCCCTCCCCCCTCGCGGCCTCTCGCCGGCGGCCGCCCACCTCCGGGGATCCTCTCTCCGGCGCGGAGCTTCCTCATCCTGCCCGTCGCCCGCCCCAATTGCCCGGCCGCCGCCTCCGCCGCTGCTGCAAGGGAATCGCCCGGCGCCGCCGTTCCCCCCCGATCGTCGTACCGTTGGCTGGTTGCGTGCTGCTGCGTCGATCTCGTGGGCGGGTCACCCGGAGGCGGCATTTTAGCGGCGGGACTCCGCGTGGTACGCTTCCCTTTGCCCTTTTAGCGCAGGCTTGTTTTGGCGATTGATCACACTGTAGAAATCAAATTCCAAGTGAAGTTGCCAAACAATTACCTATCTGCTGTTATTGCTTCCATGGCAACCAACGAGAACCTCCCACCAAATGTCGTTAGGCAATTGGCTAAGGAACTGAAGAGTCTTGATGGGTCACCTCCAGAAGGGATTAAAGTTATTGTTAATGACGATGACTTCACCACCATTTTTGCTGATATTGAGGGACCTGCTGGAACTCCATATGAGAATGGAGTATTCCGTATGAAGCTATTGTTGTCTCGTGACTTCCCTCAGTCTCCTCCTAAAGGATTCTTCTTGACAAAAATTTTCCATCCAAATATAGCAACTAGTGGTGAAATATGTGTTAACACACTGAAGAAGGATTGGAATCCTAGCCTTGGATTAAGACATGTTCTGCTGGTAGTGAGATGCCTTCTGATAGAACCATTTCCTGAATCTGCCCTTAATGAGCAAGCTGGGAAATTGTTGCTTGAGAACTATGAGGAGTATGCACGGCATGCAAGGCTATACACTAGCATCCATGCACTTAAACCCAAGAATAAGACCAAGAGCGGGACTATTTCTGAATCAACCACAGCTCTAAATGTGGATCAGTCAAACAATGCTGTCAGCAAGAACACACCATTGGGTCCAGCAGCATTATCTACCTCCACTGCAAATAAAGCATTTGGCTCTAATTTGCAGGATCAGAATGCTGCTCCTTCTGATCCTGCCTTGGGAGCATCAGCAGTACCCAAGAAGGATG GGCT ACATG CT GTGAAAG CTCCGGTTG AG AAG AAG AAGATTG ATGCGAGGAAGAAGAGCTTG AAGAGACTATAAGTAAAACAGCCTTGGAAAAACTGAGGCTGTTAGTTGTAGCTAATAATCTAGATTTCTTCATAAGTTCCAGATCACCAGATGCATAGTAAAATCGATAATAATGTGGGGGCATCTGATGCAATATGAAACGGCGTTTGGGTTAAACAGAGAAGAATGTGTGTTGTGACTGTTGGTGTACCATACTGTCTGTGCAATATC ] [+] EMBL OSS1306A [ AGTGAAGTTGCCAAACAATTACCTATCTGCTGTTATTGCTTCCATGGCAACCAACGAGAACCTCCCACCAAATGTCGTTAGGCAATTGGCTAAGGAACTGAAGAGTCTTGATGAGTCACCTCCAGAAGGGATTAAAGTTATTGTTAATGACGATGACTTCACCACCATTTTTGCTGATATTGAGGGACCTGCTGGAACTCCATATGAGAATGGAGTATTCCGTATGAAGCTATTGTTGTCTCGTGACTTCCCTCAG ] [-] EMBL BI305954 [ ATCAGTCAAACAATGCTGTCAGCAAGAACACACCATTGGGTCCAGCAGCATTATCTACCTCCACTGCAAATAAAGCATTTGGCTCTAATTTGCAGGATCAGAATGCTGCTCCTTCTGATCCTGCCTTGGGAGCATCAGCAGTACCCAAGAAGGATG GGCT ACATG CT GTGAAAG CTCCGGTTG AG AAG AAG AAGATTG ATGCGAGGAAGAAGAGCTTG AAGAGACTATAAGTAAAACAGCCTTGGAAAAACTGAGGCTGTTAGTTGTAGCTAATAATCTAGATTTCTTCATAAGTTCCAGATCACCAGATGCATAGTAAAATCGATAATAATGTGGGGGCATTTGATGCAATATGAAACGGCGTTTGGGTTAAACAGAGAAGAATGTGTGTTGTGACTGTTGGTGTACCATACTGTCTGTGCAATATCAATTGTTCGGAAGAATACT ] [+] EMBL AU033023 [ AGGATGNGGCTAACATGTCTNTTGAAAGTCTCCGGTTGTAGTAAGNAAGTAAGATTGTATGCGAGGAAGAAGAGCTTGTAAGNGACTATAAGTAAACCAGCCTTGGAAAAANTGAGGCTGTTAGTTGTAGCTAATAATCTAGATTTCTTCATAAGTTCCAGATCACCAGATGCATAGTAAAATCGATAATAATGTGGGGGCATCTGATGCAATATGAAACGGCGTTTGGGTTAAACAGAGAAGAATGTGTGTTGTGACTGTTGGTGTACCATACTGTCTGTGCAATATCAATTGTTCGGAAGAATACTTGTCTTTTCTGTCGTTGATTGCCCCTGTGAAAAAAAA] consensusID : consensus_10279#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 155 fasta sequence [TTANTAAATTCGATAATAATGTGGGGGCATNTGATGCAATATGAAACGGCGTTTGGGTTAAACAGNGAAGAATGTGTGTTGTNACTGTTGGTGTACCATNCTGTNTGTGCAATATNAATTGTTCGGAAANAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU091807 [TTANTAAATTCGATAATAATGTGGGGGCATNTGATGCAATATGAAACGGCGTTTGGGTTAAACAGNGAAGAATGTGTGTTGTNACTGTTGGTGTACCATNCTGTNTGTGCAATATNAATTGTTCGGAAANAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_10279#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 141 fasta sequence [GGGATCCTCATCTCCGGCGCGGAGCTTCCTCATCCGGCCCGGCGCCCGCCCAATTGCCCGGCGCGCCTCCGCCGTGCTGCAAGGGAATCGCCCGGCGCCGCCGTATCCCACCCCGAAATCGTCGATACCGTTAGGCTGGAT] [+] EMBL BU667132 [GGGATCCTCATCTCCGGCGCGGAGCTTCCTCATCCGGCCCGGCGCCCGCCCAATTGCCCGGCGCGCCTCCGCCGTGCTGCAAGGGAATCGCCCGGCGCCGCCGTATCCCACCCCGAAATCGTCGATACCGTTAGGCTGGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10279#0 AATCGAAGAGCGCCTCCTCCACGCCCCTAGGGTTTCCTCCCCCTCCCCCCTCGCGGCCTC 60 consensus_10279#2 ------------------------------------------------------------ consensus_10279#1 ------------------------------------------------------------ consensus_10279#0 TCGCCGGCGGCCGCCCACCTCCGGGGATCCTC-TCTCCGGCGCGGAGCTTCCTCATCCTG 119 consensus_10279#2 -----------------------GGGATCCTCATCTCCGGCGCGGAGCTTCCTCATCCGG 37 consensus_10279#1 ---------------------TTANTAAATTCGATAATAATGTGGGGGCATNTGATGCAA 39 * ** * ** * * ** * consensus_10279#0 CCCGTCGCC-CGCCCCAATTGCCCGGCCGC-CGCCTCCGCCGCTGCTGCAAGGGAATCGC 177 consensus_10279#2 CCCGGCGCC-CGCCC-AATTGCCCGGCG---CGCCTCCGCCG-TGCTGCAAGGGAATCGC 91 consensus_10279#1 TATGAAACGGCGTTTGGGTTAAACAGNGAAGAATGTGTGTTGTNACTGTTGGTGTACCAT 99 * * ** ** * * * * * *** * * * * consensus_10279#0 CCGGCGC-CGCCGTTCC--CCCCC----GATCGTCG-TACCGTT-GGCTGGTTGCGTGCT 228 consensus_10279#2 CCGGCGC-CGCCGTATC--CCACCCCGAAATCGTCGATACCGTTAGGCTGGAT------- 141 consensus_10279#1 NCTGTNTGTGCAATATNAATTGTTCGGAAANAAAAAAAAAAAAAAAAAAAAAAAAA---- 155 * * ** * * * consensus_10279#0 GCTGCGTCGATCTCGTGGGCGGGTCACCCGGAGGCGGCATTTTAGCGGCGGGACTCCGCG 288 consensus_10279#2 ------------------------------------------------------------ consensus_10279#1 ------------------------------------------------------------ consensus_10279#0 TGGTACGCTTCCCTTTGCCCTTTTAGCGCAGGCTTGTTTTGGCGATTGGTCACACTGTAG 348 consensus_10279#2 ------------------------------------------------------------ consensus_10279#1 ------------------------------------------------------------ consensus_10279#0 AAATCAAATTCCAAGTGAAGTTGCCAAACAATTACCTATCTGCTGTTATTGCTTCCATGG 408 consensus_10279#2 ------------------------------------------------------------ consensus_10279#1 ------------------------------------------------------------ consensus_10279#0 CAACCAACGAGAACCTCCCACCAAATGTCGTTAGGCAATTGGCTAAGGAACTGAAGAGTC 468 consensus_10279#2 ------------------------------------------------------------ consensus_10279#1 ------------------------------------------------------------ consensus_10279#0 TTGATGAGTCACCTCCAGAAGGGATTAAAGTTATTGTTAATGACGATGACTTCACCACCA 528 consensus_10279#2 ------------------------------------------------------------ consensus_10279#1 ------------------------------------------------------------ consensus_10279#0 TTTTTGCTGATATTGAGGGACCTGCTGGAACTCCATATGAGAATGGAGTATTCCGTATGA 588 consensus_10279#2 ------------------------------------------------------------ consensus_10279#1 ------------------------------------------------------------ consensus_10279#0 AGCTATTGTTGTCTCGTGACTTCCCTCAGTCTCCTCCTAAAGGATTCTTCTTGACAAAAA 648 consensus_10279#2 ------------------------------------------------------------ consensus_10279#1 ------------------------------------------------------------ consensus_10279#0 TTTTCCATCCAAATATAGCAACTAGTGGTGAAATATGTGTTAACACACTGAAGAAGGATT 708 consensus_10279#2 ------------------------------------------------------------ consensus_10279#1 ------------------------------------------------------------ consensus_10279#0 GGAATCCTAGCCTTGGATTAAGACATGTTCTGCTGGTAGTGAGATGCCTTCTGATAGAAC 768 consensus_10279#2 ------------------------------------------------------------ consensus_10279#1 ------------------------------------------------------------ consensus_10279#0 CATTTCCTGAATCTGCCCTTAATGAGCAAGCTGGGAAATTGTTGCTTGAGAACTATGAGG 828 consensus_10279#2 ------------------------------------------------------------ consensus_10279#1 ------------------------------------------------------------ consensus_10279#0 AGTATGCACGGCATGCAAGGCTATACACTAGCATCCATGCACTTAAACCCAAGAATAAGA 888 consensus_10279#2 ------------------------------------------------------------ consensus_10279#1 ------------------------------------------------------------ consensus_10279#0 CCAAGAGCGGGACTATTTCTGAATCAACCACAGCTCTAAATGTGGATCAGTCAAACAATG 948 consensus_10279#2 ------------------------------------------------------------ consensus_10279#1 ------------------------------------------------------------ consensus_10279#0 CTGTCAGCAAGAACACACCATTGGGTCCAGCAGCATTATCTACCTCCACTGCAAATAAAG 1008 consensus_10279#2 ------------------------------------------------------------ consensus_10279#1 ------------------------------------------------------------ consensus_10279#0 CATTTGGCTCTAATTTGCAGGATCAGAATGCTGCTCCTTCTGATCCTGCCTTGGGAGCAT 1068 consensus_10279#2 ------------------------------------------------------------ consensus_10279#1 ------------------------------------------------------------ consensus_10279#0 CAGCAGTACCCAAGAAGGATGGGCTACATGCTGTGAAAGCTCCGGTTGAGAAGAAGAAGA 1128 consensus_10279#2 ------------------------------------------------------------ consensus_10279#1 ------------------------------------------------------------ consensus_10279#0 TTGATGCGAGGAAGAAGAGCTTGAAGAGACTATAAGTAAAACAGCCTTGGAAAAACTGAG 1188 consensus_10279#2 ------------------------------------------------------------ consensus_10279#1 ------------------------------------------------------------ consensus_10279#0 GCTGTTAGTTGTAGCTAATAATCTAGATTTCTTCATAAGTTCCAGATCACCAGATGCATA 1248 consensus_10279#2 ------------------------------------------------------------ consensus_10279#1 ------------------------------------------------------------ consensus_10279#0 GTAAAATCGATAATAATGTGGGGGCATCTGATGCAATATGAAACGGCGTTTGGGTTAAAC 1308 consensus_10279#2 ------------------------------------------------------------ consensus_10279#1 ------------------------------------------------------------ consensus_10279#0 AGAGAAGAATGTGTGTTGTGACTGTTGGTGTACCATACTGTCTGTGCAATATCAATTGTT 1368 consensus_10279#2 ------------------------------------------------------------ consensus_10279#1 ------------------------------------------------------------ consensus_10279#0 CGGAAGAATACTTGTCTTTTCTGTCGTTGATTGCCCCTGTGAAAAAAAA 1417 consensus_10279#2 ------------------------------------------------- consensus_10279#1 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||