These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10285#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1039 fasta sequence [AAGAAAAAGGAAGAAAAACAACGGCGGCGAGGAGCAGAGGGGAGCTCAGCTTTCACCGAAGCCTCTCGCTCGCTCGCCCGCCGCATCCTCTCCTCTCCACTCCCTCTCGACCACCCAACCCGCAAAGCTACGACGAAGCATACACCGCCCCGCGAATCCCGTCTCTTTCATGGGCTTCTTCTCCCCCCACAGCAGATTCGATTCCGCCATCTGCTTGCTTTGATGACTAATTCATATGACCGTAGTCGTCATTAAGCCATTACAACTAGGAGTTACCTGGAAATGTTGAGAAGCTCCAAGGTTCTAGGTGGTTCCTTTGCCAAACAACTATAATATAGATTTTATGAGGGGAGGAAACTCAGATGAATTTTGCCAGTGCCAGGCCTGCCTTGGCAGGTACACACTACTTGCAGAT-GAAGAAAATCCAAGA-TTGGCAAT-GTTTGAGAGACGACTTCCCTTCTTTGGTTGTGGAATTGGTTGGTGCTG-TTTTCTTTTAGGTTTCTTGTGCCCCTTGATCTGGTACATTGCAGCTCTTCTTTATTACTGCAAGTACTACAACCGCGATCCTCGAGAGCGGCCTGGGCTTGCTGCTTCTGCTTTTCTGGCAGTCATATTTACAGCAGCAACTATTGTTACCCTTTCTGTTTTGCTGATTATGTGTACACAGAAACGATTGAATAGCTGTGCTTGTCTGGGCTGACTGAACTGCAAGACATTGTTGCAGATCCTTGTGACTAAATTCTTATACTGATTCTTTTGTTCGTCTATTTGCTGGAATGCAAAAGGGAAACCCAAGGATTGTTCTTCATTAGGATAACTCCTTATCAGCAATATCAGCTATTGCATGCTCATGGGGGATGATTGTAGAGAGAAGTGGCTAACTGGCGTGTACTTTCTTCTGTAGACGCTTTGTAAGCAATTTTTCACTGACAAATTTATGTTAACTAGAGCAATCTGGAGTTCAGGAATTAATCCAATGAGGTTGATTTGATCAAGCAGAACATCGGCAAATGCGGAATTTGTTCATTCTTTTTAAAAA] [+] EMBL CF310007 [AAGAAAAAGGAAGAAAAACAACGGCGGCGAGGAGCAGAGGGGAGCTCAGCTTTCACCGAAGCCTCTCGCTCGCTCGCCCGCCGCATCCTCTCCTCTCCACTCCCTCTCGACCACCCAACCCGCAAAGCTACGACGAAGCATACACCGCCCCGCGAATCCCGTCTCTTTCATGGGCTTCTTCTCCCCCCACAGCAGATTCGATTCCGCCATCTGCTTGCTTTGATGACTAATTCATATGACCGTAGTCGTCATTAAGCCATTACAACTAGGAGTTACCTGGAAATGTTGAGAAGCTCCAAGGTTCTAGGTGGTTCCTTTGCCAAACAACTATAATATAGATTTTATGAGGGGAGGAAACTCAGATGAATTTTGCCAGTGCCAGGCCTGCCTTGGCAGGTACACACTACTTGCAGAT GAAGAAAATCCAAGA TTGGCAAT GTTTGAGAGACGACTTCCCTTCTTTGGTTGTGGAATTGGTTGGTGCTG TTTTCTTTTAGGTTTCTTGTGCCCCTTGATCTGGTACATTGCAGCTCTTCTTTATTACTGCAAGTACTACAACCGCGATC ] [+] EMBL C28934 [ CTCTCGCTCGNTCGCCCGCCGCATCCTCTCCTCTCCACTCCCTCTCGACCACCCAACCCGCAAAGCTACGACGAAGCATACACCGCCCCGCGAATCCCGTCTCTTTCATNGGCTTCTTCTCCCCCCACAGNAGNTTCGATTCCGCCATCTGATTGNTTTGATGNCTAATTCATATGACCGTAGTCGTCATTAAGCCATTNCAACTAGGAGTTACCTGGAAATGTTGAGAAGCTCCAAGGTTCTAGGTGGTTCCTTTGCCAAACAACTATAATATAGATTTTATGAGGGGAGGNAACTCAGATGAATTTTGCCAGTGCCAGGCNTGNCTTGGCAGGTACACACTACTTGCAGATGGAAGGAAATCCAAGATTTGGCAATGGTTTGAGAGACGACTT CCTTCTTTGNTTGTGGg ] [+] EMBL BM420031 [ gttcCTGTTTTTCTTTTAGGTTTC TGTGCCCCTTGATCTGGTACATTGCAGCTCTTCTTTATTACTGCAAGTACTACAACCGCGATCCTCGAGAGCGGCCTGGGCTTGCTGCTTCTGCTTTTCTGGCAGTCATATTTACAGCAGCAACTATTGTTACCCTTTCTGTTTTGCTGATTATGTGTACACAGAAACGATTGAATAGCTGTGCTTGTCTGGGCTGACTGAACTGCAAGACATTGTTGCAGATCCTTGTGACTAAATTCTTATACTGATTCTTTTGTTCGTCTATTTGCTGGAATGCAAAAGGGAAACCCAAGGATTGTTCTTCATTAGGATAACTCCTTATCAGCAATATCAGCTATTGCATGCTCATGGGGGATGATTGTAGAGAGAAGTGGCTAACTGGCGTGTACTTTCTTCTGTAGACGCTTTGTAAGCAATTTTTCACTGACAAATTTATGTTAACTAGAGCAATCTGGAGTTCAGGAATTAATCCAATGAGGTTGATTTGATCAAGCAGAACATCGGCAAATGCGGAATTTGTTCATTCTTTTTAAAAA] consensusID : consensus_10285#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 922 fasta sequence [TCTAAAACCTGGAGCAAACTGTCAAAGATCAGTTGTATTTAGTGTATAAGATATACAGTAGGTTTAACATAATTTGCTTTATCTCAATGATGTTGCATTGCCTGTGTAGCCTTCTTTGTTATGCAAGAAAACTTAGAAAATGGGCCACAAATATGATAAACTAATTATCTAGCTTATGGTCATGGAGTCTATCCCTTTATTTTCATTATGCTCGCCTTCTAGAGCAATGTTTTTTTCCCCTTACAGTTTATCTGTTTTGGCTTGTGCAGGCAGTCATATTTACAGCAGCAACTATTGTTACCCTTTCTGTTTTGCTGATTATGTGTACACAGAAACGATTGAATAGCTGTGCTTGTCTGGGCTGACTGAACTGCAAGACATTGTTGCAGATCCTTGTGACCAAATTCTTATACTGATTCTTTTGTTCGTCTATTTGCTGGAATGC-AAAAAGGGAAACCAAAGGATTGTTCTTCATTAGGATAACTCCTTATCAGCAATATCAGCTATTGCATACTCATGGGGGATGATTGTAGAGAGAAGTGGCTAACTGGCGTGTACTTTCTTCTGTAGACGCTTTGTAAGCAATTTTTCACTGACAAATTTATGTTAACTAGAGCAATCTGGAGTTCAGGAATTAATCCAATGAGGTTGATTTGATCAAGCAGAACAATCGGCAAAATGCGGAATTTGTTCATTCTTTTTAATCAAATGATTTTGTTCTTTCTAGCACAATACATGAACCTGTGACTTTGTTCAAAATGTGGACATATGAGTGACAATGTATGCTGAAAGCCATGGAGCTGACAAATCTGTGTTATGTAAATTCCAAGCACATTTTGTAAAAAAAAACCTTACAATGAACAGTAAGCAAGTGTCAAGTGGTGTTACTCTTGTCACATGAATAAAAAAAAAAAAAAAAAAA] [+] EMBL AU101013 [TCTAAAACCTGGAGCAAACTGTCAAAGATCAGTTGTATTTAGTGTATAAGATATACAGTAGGTTTAACATAATTTGCTTTATCTCAATGATGTTGCATTGCCTGTGTAGCCTTCTTTGTTATGCAAGAAAACTTAGAAAATGGGCCACAAATATGATAAACTAATTATCTAGCTTATGGTCATGGAGTCTATCCCTTTATTTTCATTATGCTCGCCTTCTAGAGCAATGTTTTTTTCCCCTTACAGTTTATCTGTTTTGGCTTGTGCAGGCAGTCATATTTACAGCAGCAACTATTGTTACCCTTTCTGTTTTGCTGATTATGTGTACACAGAAACGATTGAATAGCTGTGCTTGTCTGGGCTGACTGAACTGCAAGACATTGTTGCAGATCCTTGTGACCAAATTCTTATACTGATTCTTTTGTTCGTCTAaaaa ] [+] EMBL CA763948 [ aaggggGGAGCAAACTGTCAAAGATCAGTTGTATTTAGTGTATAAGATATACAGTAGGTTTAACATAATTTGCTTTATCTCAATGATGTTGCATTGCCTGTGTAGCCTTCTTTGTTATGCAAGAAAACTTAGAAAATGGGCCACAAATATGATAAACTAATTATCTAGCTTATGGTCATGGAGTCTATCCCTTTATTTTCATTATGCTCGCCTTCTAGAGCAATGTTTTTTTCCCCTTACAGTTTATCTGTTTTGGCTTGTGCAGGCAGTCATATTTACAGCAGCAACTATTGTTACCCTTTCTGTTTTGCTGATTATGTGTACACAGAAACGATTGAATAGCTGTGCTTGTCTGGGCTGACTGAACTGCAAGACATTGTTGCAGATCCTTGTGACCAAATTCTTATACTGATTCTTTTGTTCGTCTATTTGCTGGAATGC AAAAAGGGAAACCAAAGGATTGTTCTTCATTAGGATAACTCCTTATCAGCAATATCAGCTATTGCATACTCATGGGGGATGATTGTAGAGAGAAGTGGCTAACTGGCGTGTACTTTCTTCTGTAGACGCTTTGTAAGCAATTTTTCACTGACAAATTTATGTTAACTAGAGCAATCTGGAGTTCAGGAATTAATCCAATGAGGNTGATTTGATCAAGCAGAACAATCGGCAAAATGCGGAATTTGGTCATTCTTTTTAATCAAATGATTTTGGTC ] [-] EMBL CA761384 [ TAAACTAATTATCTAGCTTATGGTCATGGAGTCTATCCCTTTATTTTCATTATGCTCGCCTTCTAGAGCAATGTTTTTTTCCCCTTACAGTTTATCTGTTTTGGCTTGTGCAGGCAGTCATATTTACAGCAGCAACTATTGTTACCCTTTCTGTTTTGCTGATTATGTGTACACAGAAACGATTGAATAGCTGTGCTTGTCTGGGCTGACTGAACTGCAAGACATTGTTGCAGATCCTTGTGACCAAATTCTTATACTGATTCTTTTGTTCGTCTATTTGCTGGAATGC AAAAAGGGAAACCAAAGGATTGTTCTTCATTAGGATAACTCCTTATCAGCAATATCAGCTATTGCATACTCATGGGGGATGATTGTAGAGAGAAGTGGCTAACTGGCGTGTACTTTCTTCTGTAGACGCTTTGTAAGCAATTTTTCACTGACAAATTTATGTTAACTAGAGCAATCTGGAGTTCAGGAATTAATCCAATGAGGTTGATTTGATCAAGCAGAACAATCGGCAAAATGCGGAATTTGTTCATTCTTTTTAATCAAATGATTTTGTTCTTTCTAGCACAATACATGAACCTGTGACTTTGTTCAAAATGTGGACATATGAGTGACAATGTATGCTGAAAGCCATGGAGCTGACAAATCTGTGTTATGTAAATTCCAAGCACATTTTGTAAAAAAAA ] [-] EMBL CF310008 [ ATCCTTGTGACCAAATTCTTATACTGATTCTTTTGTTCGTCTATTTGCTGGAATGCAAAAAAGGGAAACCAAAGGATTGTTCTTCATTAGGATAACTCCTTATCAGCAATATCAGCTATTGCATACTCATGGGGGATGATTGTAGAGAGAAGTGGCTAACTGGCGTGTACTTTCTTCTGTAGACGCTTTGTAAGCAATTTTTCACTGACAAATTTATGTTAACTAGAGCGATCTGGAGTTCAGGAATTAATCCAATGAGGTTGATTTGATCAAGCAGAACAATCGGCAAAATGCGGAATTTGTTCATTCTTTTTAATCAAATGATTTTGTTCTTTTTAGCACAATACATGAACCTGTGACTTTGTTCAAAATGTGGACATATGAGTGACAATGTATGCTGAAAGCCATGGAGCTGACAAATCTGTGTTATGTAAATTCCAAGCACATTTTGTACATTATTACCTTACAATGAACAGTAAGCAAGTGTCAAGTGGTGTTACTCTTGTCACATGAATAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10285#0 AAGAAAAAGGAAGAAAAACAACGGCGGCGAGGAGCAGAGGGGAGCTCAGCTTTCACCGAA 60 consensus_10285#1 ------------------------------------------------------------ consensus_10285#0 GCCTCTCGCTCGCTCGCCCGCCGCATCCTCTCCTCTCCACTCCCTCTCGACCACCCAACC 120 consensus_10285#1 ------------------------------------------------------------ consensus_10285#0 CGCAAAGCTACGACGAAGCATACACCGCCCCGCGAATCCCGTCTCTTTCATGGGCTTCTT 180 consensus_10285#1 ------------------------------------------------------------ consensus_10285#0 CTCCCCCCACAGCAGATTCGATTCCGCCATCTGCTTGCTTTGATGACTAATTCATATGAC 240 consensus_10285#1 ------------------------------------------------------------ consensus_10285#0 CGTAGTCGTCATTAAGCCATTACAACTAGGAGTTACCTGGAAATGTTGAGAAGCTCCAAG 300 consensus_10285#1 ------------------------------------------------------------ consensus_10285#0 GTTCTAGGTGGTTCCTTTGCCAAACAACTATAATATAGATTTTATGAGGGGAGGAAACTC 360 consensus_10285#1 --------------------------TCTAAAACCTGGA----GCAAACTGTCAAAGATC 30 *** ** * ** * * ** ** consensus_10285#0 AGATGAATTTTGCCAGTGCCAGGCCTGCCTTGGCAGGTACACACTACTTGCAGATGAAGA 420 consensus_10285#1 AGTTGTATTTAGT--GTATAAGATATACAGTAG--GTTTAACATAATTTGC--TTTATCT 84 ** ** **** * ** ** * * * * * * *** * **** * * consensus_10285#0 AAATCCAAGATTGGCAATGTTTGAGAGACGACTTCCCTTCTTTGGTTGTGGAATTGGTTG 480 consensus_10285#1 CAAT--GATGTTG-CATTGCCTGTGTAGC--CTTCTTTGTTATGCAAGAAAACTTAGAAA 139 *** * *** ** ** ** * * **** * * ** * * ** * consensus_10285#0 GTGCTGTTT---TCTTTTAGGTTTCTTGTGCCCCTTGATCTGGTACATTGCAGCTCTTCT 537 consensus_10285#1 ATGGGCCACAAATATGATAAACTAATTATCTAGCTTATGGTCATGGAGTCTATCCCTTTA 199 ** * * ** * ** * *** * * * * * * *** consensus_10285#0 TTATTACTGCAAGTAC-TACAACCGCGATCCTCGAGAGCGGCCTGGGCTTG-CTGCTTCT 595 consensus_10285#1 TTTTCATTATGCTCGCCTTCTAGAGCAATGTTTTTTTCCCCTTACAGTTTATCTGTTTTG 259 ** * * * * * * * ** ** * * * ** *** ** consensus_10285#0 GCTTTT-CTGGCAGTCATATTTACAGCAGCAACTATTGTTACCCTTTCTGTTTTGCTGAT 654 consensus_10285#1 GCTTGTGCAGGCAGTCATATTTACAGCAGCAACTATTGTTACCCTTTCTGTTTTGCTGAT 319 **** * * *************************************************** consensus_10285#0 TATGTGTACACAGAAACGATTGAATAGCTGTGCTTGTCTGGGCTGACTGAACTGCAAGAC 714 consensus_10285#1 TATGTGTACACAGAAACGATTGAATAGCTGTGCTTGTCTGGGCTGACTGAACTGCAAGAC 379 ************************************************************ consensus_10285#0 ATTGTTGCAGATCCTTGTGACTAAATTCTTATACTGATTCTTTTGTTCGTCTATTTGCTG 774 consensus_10285#1 ATTGTTGCAGATCCTTGTGACCAAATTCTTATACTGATTCTTTTGTTCGTCTATTTGCTG 439 ********************* ************************************** consensus_10285#0 GAATGCAAAA-GGGAAACCCAAGGATTGTTCTTCATTAGGATAACTCCTTATCAGCAATA 833 consensus_10285#1 GAATGCAAAAAGGGAAACCAAAGGATTGTTCTTCATTAGGATAACTCCTTATCAGCAATA 499 ********** ******** **************************************** consensus_10285#0 TCAGCTATTGCATGCTCATGGGGGATGATTGTAGAGAGAAGTGGCTAACTGGCGTGTACT 893 consensus_10285#1 TCAGCTATTGCATACTCATGGGGGATGATTGTAGAGAGAAGTGGCTAACTGGCGTGTACT 559 ************* ********************************************** consensus_10285#0 TTCTTCTGTAGACGCTTTGTAAGCAATTTTTCACTGACAAATTTATGTTAACTAGAGCAA 953 consensus_10285#1 TTCTTCTGTAGACGCTTTGTAAGCAATTTTTCACTGACAAATTTATGTTAACTAGAGCAA 619 ************************************************************ consensus_10285#0 TCTGGAGTTCAGGAATTAATCCAATGAGGTTGATTTGATCAAGCAGAACA-TCGGCAAA- 1011 consensus_10285#1 TCTGGAGTTCAGGAATTAATCCAATGAGGTTGATTTGATCAAGCAGAACAATCGGCAAAA 679 ************************************************** ******** consensus_10285#0 TGCGGAATTTGTTCATTCTTTTTAAAAA-------------------------------- 1039 consensus_10285#1 TGCGGAATTTGTTCATTCTTTTTAATCAAATGATTTTGTTCTTTCTAGCACAATACATGA 739 ************************* * consensus_10285#0 ------------------------------------------------------------ consensus_10285#1 ACCTGTGACTTTGTTCAAAATGTGGACATATGAGTGACAATGTATGCTGAAAGCCATGGA 799 consensus_10285#0 ------------------------------------------------------------ consensus_10285#1 GCTGACAAATCTGTGTTATGTAAATTCCAAGCACATTTTGTAAAAAAAAACCTTACAATG 859 consensus_10285#0 ------------------------------------------------------------ consensus_10285#1 AACAGTAAGCAAGTGTCAAGTGGTGTTACTCTTGTCACATGAATAAAAAAAAAAAAAAAA 919 consensus_10285#0 --- consensus_10285#1 AAA 922 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||