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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10287#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1521 fasta sequence
[TGTCTGCATAGACCGTTCCACTACTTGAAGTCTTGCAGGGACCTAGTTATTAGCTAGCTAGCGGCTGCCGCCTGCCGCCCAGCAAAATCGAGCACACAGGGAAAGCGCCGAGAAGAATAGTGGACATGGGACGGGAGCCGGAGATGGAGGAAGCACGGGAGAATGGGGGCGTCGGCGGCTCTGTGCTGCCTCTGGCCTCGCTCATCTCTCCAACTGGGAACGAGGTGCAGATTTCTGAGCTAGAGGGCAAGATCATAGGGCTGTACTTCGCTGCAAACTGGTACCCCAAGTGCGAGGCCTTCACCCCCGCGCTGACCGCCGCCTACCACCAGCTCAAGGAGCACGGCGCCGGCTTCGAGGTCATCTTCGTGTCGTGCGACGAGAATCGACCGTCCTTCGAGAGGTTCCACCGCGCCATGCCGTGGCCCGCCGTGCCCTTCGGCGACATCGGGTGCAAGAAGCGCCTCAGCGAGAGGTTCCAGGTCGAGGGCATCCCGCGCCTGGTGGTGCTCGCCCCGAACGGCGAGGTCGTGCAGCCTGATGCCGTCGAGCTCGTGCACCGCTACGGCGATCGGGCATTCCCCTTCACGTCGGCGAGGGTGGCGGAGCTGGAGGCCGACGAGCAGCGCAAGTTCGCGTCTCAGACGCTGGAGAAGATCTTCTCCGTCAGCGGGAAAGACTACGTGAACGGTAGCCAAGAACAGGTTCCCATCTCGAGCCTAGTCGGGAAGACGGTAGGGCTCTACTTCTCGGCGCACCGGTGTGCGCCGTGCATCAAGTTCACCGCGAAGCTGGCCGCCATATACAGCAACCTGAAGGGCAAGGCCGAGGACTTTGAGATAATCTACATCCCCATGGACAAGGAGGAGGACGGGTACCTGCGGTCGTGCAGCGACATGCCGTGGCTGGCGCTGCCGTACGACGACGGCGCGTCGTCGGGGGCGCTGGCCAGGTACTTCGACGTCCGGGAGATCCCGACGCTGGTGGTGGTTGGGCCCGACGGCAAGACGGTGACGAGGGAGGGGAGGAACCTGGTGAACCTCTACTTCGACATGGCGTTCCCGTTCACCGACGAGCAGATCAGGCTGCTGCAGGAGATGGAGGACGAGGATGCCAAGGGGTACCCGCCGTCGCTGCGCCACACCGGCCACCGCCACGAGCTAAGCATCGTGTCTGACAAGTCGGGAGGAGGGCCGTACATCTGCTGCGAGTGCGACGAGCAGGGGCTCGGTTGGGCGTACCAGTGCATCGCCTGCGGCTACGAGATACACCTCCGGTGCGGTCGGGACATGGAAGGCAGGGCGGAATAGGAGCATAGGGCCCTCCAACTCGTAGTATATTGAACTGAACGTGGTGTGGTGTGGTGTGTGTCTATTGATCTGAACAAAGCTTGGGTTGCTCTTGCCAAGCCTGATGGCAGAATAGATGAGGATAACACAAGTGGTTTCTGTACTTCTGTTATGTGTTCCTTGGCTGCAAAAGTGATGCAGTTCAGGGTGTTGAATAAACGTGATAATGCTG]
[+] EMBL CF278625 [TGTCTGCATAGACCGTTCCACTACTTGAAGTCTTGCAGGGACCTAGTTATTAGCTAGCTAGCGGCTGCCGCCTGCCGCCCAGCAAAATCGAGCACACAGGGAAAGCGCCGAGAAGAATAGTGGACATGGGACGGGAGCCGGAGATGGAGGAAGCACGGGAGAATGGGGGCGTCGGCGGCTCTGTGCTGCCTCTGGCCTCGCTCATCTCTCCAACTGGGAACGAGGTGCAGATTTCTGAGCTAGAGGGCAAGATCATAGGGCTGTACTTCGCTGCAAACTGGTACCCCAAGTGCGAGGCCTTCACCCCCGCGCTGACCGCCGCCTACCACCAGCTCAAGGAGCACGGCGCCGGCTTCGAGGTCATCTTCGTGTCGTGCGACGAGAATCGACCGTCCTTCGAGAGGTTCCACCGCGCCATGCCGTGGCCCGCCGTGCCCTTCGGCGACATCGGGTGCAAGAAGCGCCTC ]
[+] EMBL AK122041 [ TGGGACGGGAGCCGGAGATGGAGGAAGCACGGGAGAATGGGGGCGTCGGCGGCTCTGTGCTGCCTCTGGCCTCGCTCATCTCTCCAACTGGGAACGAGGTGCAGATTTCTGAGCTAGAGGGCAAGATCATAGGGCTGTACTTCGCTGCAAACTGGTACCCCAAGTGCGAGGCCTTCACCCCCGCGCTGACCGCCGCCTACCACCAGCTCAAGGAGCACGGCGCCGGCTTCGAGGTCATCTTCGTGTCGTGCGACGAGAATCGACCGTCCTTCGAGAGGTTCCACCGCGCCATGCCGTGGCCCGCCGTGCCCTTCGGCGACATCGGGTGCAAGAAGCGCCTCAGCGAGAGGTTCCAGGTCGAGGGCATCCCGCGCCTGGTGGTGCTCGCCCCGAACGGCGAGGTCGTGCAGCCTGATGCCGTCGAGCTCGTGCACCGCTACGGCGATCGGGCATTCCCCTTCACGTCGGCGAGGGTGGCGGAGCTGGAGGCCGACGAGCAGCGCAAGTTCGCGTCTCAGACGCTGGAGAAGATCTTCTCCGTCAGCGGGAAAGACTACGTGAACGGTAGCCAAGAACAGGTTCCCATCTCGAGCCTAGTCGGGAAGACGGTAGGGCTCTACTTCTCGGCGCACCGGTGTGCGCCGTGCATCAAGTTCACCGCGAAGCTGGCCGCCATATACAGCAACCTGAAGGGCAAGGCCGAGGACTTTGAGATAATCTACATCCCCATGGACAAGGAGGAGGACGGGTACCTGCGGTCGTGCAGCGACATGCCGTGGCTGGCGCTGCCGTACGACGACGGCGCGTCGTCGGGGGCGCTGGCCAGGTACTTCGACGTCCGGGAGATCCCGACGCTGGTGGTGGTTGGGCCCGACGGCAAGACGGTGACGAGGGAGGGGAGGAACCTGGTGAACCTCTACTTCGACATGGCGTTCCCGTTCACCGACGAGCAGATCAGGCTGCTGCAGGAGATGGAGGACGAGGATGCCAAGGGGTACCCGCCGTCGCTGCGCCACACCGGCCACCGCCACGAGCTAAGCATCGTGTCTGACAAGTCGGGAGGAGGGCCGTACATCTGCTGCGAGTGCGACGAGCAGGGGCTCGGTTGGGCGTACCAGTGCATCGCCTGCGGCTACGAGATACACCTCCGGTGCGGTCGGGACATGGAAGGCAGGGCGGAATAGGAGCATAGGGCCCTCCAACTCGTAGTATATTGAACTGAACGTGGTGTGGTGTGGTGTGTGTCTATTGATCTGAACAAAGCTTGGGTTGCTCTTGCCAAGCCTGATGGCAGAATAGATGAGGATAACACAAGTGGTTTCTGTACTTCTGTTATGTGTTCCTTGGCTGCAAAAGTGATGCAGTTCAGGGTGTTGAATAAACGTGATAATGCTG]
[+] EMBL BP432954 [ CTCTCCAACTGGGAACGAGGTGCAGATTTCTGAGCTAGAGGGCAAGATCATAGGGCTGTACTTCGCTGCAAACTGGTACCCCAAGTGCGAGGCCTTCACCCCCGCGCTGACCGCCGCCTACCACCAGCTCAAGGAGCACGGCGCCGGCTTCGAGGTCATCTTCGTGTCGTGCGACGAGAATCGACCGTCCTTCGAGAGGTTCCACCGCGCCATGCCGTGGCCCGCCGTGCCCTTCGGCGACATCGGGTGCAAGAAGCGCCTCAGCGAGAGGTTCCAGGTCGAGGGCATCCCGCGCCTGGTGGTGCTCGCCCCGAACGGCGAGGTCGTGCAGCCTGATGCCGTCGAGCTCGTGCACCGCTACGGCGATCGGGCATTCCCCTTCACGTCGGCGAGGGTGGCGGAGCTGGAGGCCGACGAGCAGCGCAAGTTCGCGTCTCAGACGCTGGAGAAGATCTTCTCCGTCAGCGGGAAAGACTACGTGAACGGTAGCCAAGAACAGGTTCCCATCTNGAGCCT ]
consensusID : consensus_10287#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 425 fasta sequence
[ACTTGAAGTCTTGCAGGGACCTAGTTATTAGCTAGCTAGCGGCTGCCGCCTGCCGCCCAGCAAAATCGAGCACACAGGGAAAGCGCCGAGAAGAATAGTGGACATGGGACGGGAGCCGGAGATGGAGGAAGCACGGGAGAATGGGGGCGTCGGCGGCTCTGTGCTGCCTCTGGCCTCGCTCATCTCTCCAACTGGGAACGAGGTGCTCGTCCCGTTCATGCTTTGTTTCTGATTCTCTACTCGATCGGTTCTTGTCGGTTAAACTTGCTTGCTGTTCTCCGGTTTTAAAGATTGCTTATCCAGGCCTTGTACTGTGGCAAGCGAACAATAAGCACATCCTTGATTTCTGGGGTGGATTTGAACATGCTAGGCTGGATATAAATCATGCGGGTGAATTGATCTGATATTACGAAAATCAAAAAAAA]
[+] EMBL OSS11294A [ACTTGAAGTCTTGCAGGGACCTAGTTATTAGCTAGCTAGCGGCTGCCGCCTGCCGCCCAGCAAAATCGAGCACACAGGGAAAGCGCCGAGAAGAATAGTGGACATGGGACGGGAGCCGGAGATGGAGGAAGCACGGGAGAATGGGGGCGTCGGCGGCTCTGTGCTGCCTCTGGCCTCGCTCATCTCTCCAACTGGGAACGAGGTGCTCGTCCCGTTCATGCTTTGTTTCTGATTCTCTACTCGATCGGTTCTTGTCGGTTAAACTTGCTTGCTGTTCTCCGGTTTTAAAGATTGCTTATCCAGGNCTTGTACTGTGGCAAGCGAACAATAAGCACATCCTTGATTTCTGGGGTG ]
[+] EMBL OSS11293A [ACTTGAAGTCTTGCAGGGACCTAGTTATTAGCTAGCTAGCGGCTGCCGCCTGCCGCCCAGCAAAATCGAGCACACAGGGAAAGCGCCGAGAAGAATAGTGGACATGGGACGGGAGCCGGAGATGGAGGAAGCACGGGAGAATGGGGGCGTCGGCGGCTCTGTGCTGCCTCTGGCCTCGCTCATCTCTCCAACTGGGAACGAGGTGCTCGTCCCGTTCATGCTTTGTTTCTGATTCTCTACTCGATCGGTTCTTGTCGGTTAAACTTGCTTGCTGTTCTCCGGTTTTAAAGATTGCTTATCCAGGCCTTGTACTGTGGCAAGCGAACAATAAGCACATCCTTGATTTCTG ]
[+] EMBL AU095856 [ CTGTTCTCCGGTTTTAAAGATTGCTTATCCAGGCCTTGTACTGTGGCAAGCGAACAATAAGCACATCCTTGATTTCTGGGGTGGATTTGAACATGCTAGGCTGGATATAAATCATGCGGGTGAATTGATCTGATATTACGAAAATCAAAAAAAA]
consensusID : consensus_10287#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 336 fasta sequence
[GAGGAGGGCCGTACATCTGCTGCGAGTGCGACGAGCAGGGGCTCGGTTGGGCGTACCAGTGCATCGCCTGCGGCTACGAGATACACCTCCGGTGCGGTCGGGACATGGAAGGCAGGGCGGAATAGGAGCATAGGGCCCTCCAACTCGTAGTATATTGAACTGAACGTGGTGTGGTGTGGTGTGTGTCTATTGATCTGAACAAAGCTTGGGTTGCTCTTGCCAAGCCTGATGGCAGAATAGATGAGGATAACCCAAGTGGTTTCTGTACTTCTGTTATGTGTTCCTTGGCTGCAAAAGTGATGCAGTTCAAGGTGTTGAATAAAAAAAAAAAAAAAA]
[-] EMBL CF278626 [GAGGAGGGCCGTACATCTGCTGCGAGTGCGACGAGCAGGGGCTCGGTTGGGCGTACCAGTGCATCGCCTGCGGCTACGAGATACACCTCCGGTGCGGTCGGGACATGGAAGGCAGGGCGGAATAGGAGCATAGGGCCCTCCAACTCGTAGTATATTGAACTGAACGTGGTGTGGTGTGGTGTGTGTCTATTGATCTGAACAAAGCTTGGGTTGCTCTTGCCAAGCCTGATGGCAGAATAGATGAGGATAACCCAAGTGGTTTCTGTACTTCTGTTATGTGTTCCTTGGCTGCAAAAGTGATGCAGTTCAAGGTGTTGAATAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10287#0 TGTCTGCATAGACCGTTCCACTACTTGAAGTCTTGCAGGGACCTAGTTATTAGCTAGCTA 60
consensus_10287#2 ------------------------------------------------------------
consensus_10287#1 ------------------------------------------------------------
consensus_10287#0 GCGGCTGCCGCCTGCCGCCCAGCAAAATCGAGCACACAGGGAAAGCGCCGAGAAGAATAG 120
consensus_10287#2 ------------------------------------------------------------
consensus_10287#1 ------------------------------------------------------------
consensus_10287#0 TGGACATGGGACGGGAGCCGGAGATGGAGGAAGCACGGGAGAATGGGGGCGTCGGCGGCT 180
consensus_10287#2 ------------------------------------------------------------
consensus_10287#1 ------------------------------------------------------------
consensus_10287#0 CTGTGCTGCCTCTGGCCTCGCTCATCTCTCCAACTGGGAACGAGGTGCAGATTTCTGAGC 240
consensus_10287#2 ------------------------------------------------------------
consensus_10287#1 ------------------------------------------------------------
consensus_10287#0 TAGAGGGCAAGATCATAGGGCTGTACTTCGCTGCAAACTGGTACCCCAAGTGCGAGGCCT 300
consensus_10287#2 ------------------------------------------------------------
consensus_10287#1 ------------------------------------------------------------
consensus_10287#0 TCACCCCCGCGCTGACCGCCGCCTACCACCAGCTCAAGGAGCACGGCGCCGGCTTCGAGG 360
consensus_10287#2 ------------------------------------------------------------
consensus_10287#1 ------------------------------------------------------------
consensus_10287#0 TCATCTTCGTGTCGTGCGACGAGAATCGACCGTCCTTCGAGAGGTTCCACCGCGCCATGC 420
consensus_10287#2 ------------------------------------------------------------
consensus_10287#1 ------------------------------------------------------------
consensus_10287#0 CGTGGCCCGCCGTGCCCTTCGGCGACATCGGGTGCAAGAAGCGCCTCAGCGAGAGGTTCC 480
consensus_10287#2 ------------------------------------------------------------
consensus_10287#1 ------------------------------------------------------------
consensus_10287#0 AGGTCGAGGGCATCCCGCGCCTGGTGGTGCTCGCCCCGAACGGCGAGGTCGTGCAGCCTG 540
consensus_10287#2 ------------------------------------------------------------
consensus_10287#1 ------------------------------------------------------------
consensus_10287#0 ATGCCGTCGAGCTCGTGCACCGCTACGGCGATCGGGCATTCCCCTTCACGTCGGCGAGGG 600
consensus_10287#2 ------------------------------------------------------------
consensus_10287#1 ------------------------------------------------------------
consensus_10287#0 TGGCGGAGCTGGAGGCCGACGAGCAGCGCAAGTTCGCGTCTCAGACGCTGGAGAAGATCT 660
consensus_10287#2 ------------------------------------------------------------
consensus_10287#1 ------------------------------------------------------------
consensus_10287#0 TCTCCGTCAGCGGGAAAGACTACGTGAACGGTAGCCAAGAACAGGTTCCCATCTCGAGCC 720
consensus_10287#2 ------------------------------------------------------------
consensus_10287#1 ------------------------------------------------------------
consensus_10287#0 TAGTCGGGAAGACGGTAGGGCTCTACTTCTCGGCGCACCGGTGTGCGCCGTGCATCAAGT 780
consensus_10287#2 ------------------------------------------------------------
consensus_10287#1 ------------------------------------------------------------
consensus_10287#0 TCACCGCGAAGCTGGCCGCCATATACAGCAACCTGAAGGGCAAGGCCGAGGACTTTGAGA 840
consensus_10287#2 ------------------------------------------------------------
consensus_10287#1 ------------------------------------------------------------
consensus_10287#0 TAATCTACATCCCCATGGACAAGGAGGAGGACGGGTACCTGCGGTCGTGCAGCGACATGC 900
consensus_10287#2 ------------------------------------------------------------
consensus_10287#1 ------------------------------------------------------------
consensus_10287#0 CGTGGCTGGCGCTGCCGTACGACGACGGCGCGTCGTCGGGGGCGCTGGCCAGGTACTTCG 960
consensus_10287#2 ------------------------------------------------------------
consensus_10287#1 ------------------------------------------------------------
consensus_10287#0 ACGTCCGGGAGATCCCGACGCTGGTGGTGGTTGGGCCCGACGGCAAGACGGTGACGAGGG 1020
consensus_10287#2 ------------------------------------------------------------
consensus_10287#1 ------------------------------------------------------------
consensus_10287#0 AGGGGAGGAACCTGGTGAACCTCTACTTCGACATGGCGTTCCCGTTCACCGACGAGCAGA 1080
consensus_10287#2 ------------------------------------------------------------
consensus_10287#1 ------------------------------------------------------------
consensus_10287#0 TCAGGCTGCTGCAGGAGATGGAGGACGAGGATGCCAAGGGGTACCCGCCGTCGCTGCGCC 1140
consensus_10287#2 ------------------------------------------------------------
consensus_10287#1 ------------------ACTTGAAGTCTTGCAGGGACCTAGTTATTAGCTAGCTAGCGG 42
consensus_10287#0 ACACCGGCCACCGCCACGAGCTAAGCATCGTGTCTGACAAGTCGGGAGGAGGGCCGTACA 1200
consensus_10287#2 ---------------------------------------------GAGGAGGGCCGTACA 15
consensus_10287#1 CTGCCGCCTGCCGCCCAGCAAAATCGAGCACACAGGGAAAGCGCCGAGAAGAATAGTGGA 102
*** ** ** *
consensus_10287#0 TCTGCTGCGAGTGCGACGAGCAGGGGCTCGGTTGGGCGTACCAGTGCATCGCCTGCGGCT 1260
consensus_10287#2 TCTGCTGCGAGTGCGACGAGCAGGGGCTCGGTTGGGCGTACCAGTGCATCGCCTGCGGCT 75
consensus_10287#1 CATGGGACGGGAGCCG-GAGATGGAGGAAGCACGGGAGAATGGGGGCGTCG---GCGGCT 158
** ** * ** *** ** * * *** * * * ** *** ******
consensus_10287#0 ACGAGATACACCTCCGGTGCGGTCGGGACATGGAAGGCAGGGCGGAATAGGAGCATAGG- 1319
consensus_10287#2 ACGAGATACACCTCCGGTGCGGTCGGGACATGGAAGGCAGGGCGGAATAGGAGCATAGG- 134
consensus_10287#1 CTGTGCTG--CCTCTGGCCTCGCTCATCTCTCCAACTGGGAACGAGGTGCTCGTCCCGTT 216
* * * **** ** * * ** * ** * * *
consensus_10287#0 ---GCCCTCCAACTCGTAGTATATTGAACTGAACGTGGTGTGGTGTGGTGTGTGTCTATT 1376
consensus_10287#2 ---GCCCTCCAACTCGTAGTATATTGAACTGAACGTGGTGTGGTGTGGTGTGTGTCTATT 191
consensus_10287#1 CATGCTTTGTTTCTGATTCTCTACTCGATCGGTTCTTGTCGGTTAAACTTGCTTGCTGTT 276
** * ** * * ** * * * * ** * * * * ** **
consensus_10287#0 GATCTGAACAAAGCTTGGGTTGCTCTTGCCAAGCCTGATGGCAGAATAGATGAGGATAAC 1436
consensus_10287#2 GATCTGAACAAAGCTTGGGTTGCTCTTGCCAAGCCTGATGGCAGAATAGATGAGGATAAC 251
consensus_10287#1 CTCCGGTTTTAAAGATTGCTTATCCAGGCCTTGTACTGTGGCA-AGCGAACAATAAGCAC 335
* * ** * * ** * *** * ***** * * * * **
consensus_10287#0 ACAAGTGGTTTCTGTACTTCTGTTATGTGTTCCTTGGCTG--CAAAAGTGATGCAGTTCA 1494
consensus_10287#2 CCAAGTGGTTTCTGTACTTCTGTTATGTGTTCCTTGGCTG--CAAAAGTGATGCAGTTCA 309
consensus_10287#1 ATCCTTGATTTCTGGGGTGGATTTGAACATGC-TAGGCTGGATATAAATCATGCGGGTGA 394
** ****** * ** * * * ***** * ** * **** * * *
consensus_10287#0 G--GGTGTTGAATAAACGTGATAATGCTG-- 1521
consensus_10287#2 A--GGTGTTGAATAAAAAAAAAAAAAAAA-- 336
consensus_10287#1 ATTGATCTGATATTACGAAAATCAAAAAAAA 425
* * * ** * * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||