|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10289#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2107 fasta sequence
[ACTGTCTCACTCTCTCTTGCCCACATTTTTTTCCCCCGGAGAGCGACAACTGCAGGGCCCAAAAAGAGGCCGGATTCTTTGGTGTTTTCTGAACCTTCTTTACTTGTCCTCAAATGGCCACCTCTTCCTCCTCCTCCTCGCATTTCCTCCCATAGCTCGCATTCGCATTCGCATCGCACTCACCCTCTCCTGCAAGCAAAGCTAAAGCTTCGGTTTGGTTATTTCCTTTCCTCGCCGCTTTTTTCTTTGCTTCTTGCGGTGGCCATGGCGGTAAGGAGGAGGAGGAGGAGGAGTAGAGCCGCGGCGGTTCTGGTGGCCGCGCTGCTTCTCGCCGCCTCCGCCGCCACCGCCTCCGCGGCGTCGTCTTACCCCGCGAAGGTGGTGACCGGGTTGCTGTCCAGCACGGCGTCGGCGGTGGTGAAGCAGCTCTGGTCGCTCAAATCGACCGCCACAAGGACGGGGTCGGCGGCGGCGGGGAGGTCGATGGTGAAGTACGAGGGCGGGTACGCGGTGGAGACGGTGTTCGACGGCAGCAAGCTGGGGATCGAGCCGCACGACGTCGAGGTCACCCCCTCCGGCGAGCTCCTCGTGCTCGACTCCATGAACAGCAACGTCTACAGGGTCCAGCTGCCTCTGTCGCGATATAGCAGACCGAAGCTTGTTGCTGGTTCGCCGGAAGGATTATCCGGCCATGTCGACGGGAGGCTGCGGGAGGCGAAGATGAACCATCCGAAGGGATTTACAGTGGACGATAGGGGAAACATTTATGTTGCAGATGCTATGAATATGGCAATAAGAAAGATCAGTGATACAGGGGTTACAACCATTGCTGGGGGGAAATCAATGAGAGGTGGGCACCTAGATGGGCCAAGTGATGATGCAAAATTTTCTACTGATTTTGAAATTCGCTACATCAGCAGTAGCTGCTCCCTCTTGGTTATTGATAGAGGAAACCAAGCAATTCGCGAGATTGCACTCCACAATGATGACTGTGAATATCAGTATGAAGCTGGTTTTCCACTAGGCATTGCATTGCTTTTTGCTGCTGGTTTCTTTGGGTACATGCTTGCATTGCTTCAGCGACAGGTTTTAGGGATGGTATCAACAGCAGATGAACCTCAGACTCCTCCAAGACCCAGCATTGCAAGCATCCCTCCATATCAGAAGCCACTAAAGCCTTCGCTTCGGCCTCCACTGATCCCAACCGAAGATCAAGCTGGGAAACATGAGGCTGAAGAGGGGTTCTTCACCTCAATCGGCAAGCTCATCGGAGGAGCAAAATCATCTGCGGTAGAGATATTCTCACGAAAGAAACGCCCAACCCATCAGTACCATCATCACCTTCAGCAGCAAAGAGCCAACCCTTGGCCGGTGCAAGAAAGTTACGCCATCCCACATGATGAGACACCGCCACCATTGGACATGAGAGCAGCTACTCCTCGGAAGAACTACGCCTTCATGACGAAGGAGCCTGAAAAAGTTCACCATGTCCGCCATGGCCGGCCTTACTTCAACGGCTGGGACATGCAGCATGCCCCTCAGCAACAGCCAGAGCAGCAGATGTACCACCAGCAGCACCTGCAGCAGCACAGGCAGTACTCCGCAGGCCCGCAAACTTTCTACGAGCAGAGCTGCGAGACGACAAACGAGATCGTCTTTGGTGCTGTCCAGGAGGTGGACACCAAGCGGCGAATGGTGGAGATCAAGGCCGTGAACTATGGGGACACATTCTATGAGCAGTACGGGATGCGGTATCGCAACAATTACATCGGCTACAACAACAGCAGCAACGGCAACAACAACAGCTACTACTATTAAACAACCAACCCTTCTGCCCTCAATTTTCCCCCTCTCTCTTTATCCCTGTTTCTTTCCTATATGATTAGATTTACCGCTCGCGTTTTCGCTTCTCCTGACCTCCGCGACGCCTGTAACAAAAGAAAGAAAAAGCGGGGGGGAAGTAGAGGCACTAATCTTCTTCAGTCCTGACCTGTGCAATGCAATGGCAAACACCTGGGGAGGGGTTTTTGTACTACACCCTGATGATGATCAGACACTCTTACACTACCATCCTGTACATATATTTTGTTGTTCACCAGCTCAGCTG]
[+] EMBL AK122070 [ACTGTCTCACTCTCTCTTGCCCACATTTTTTTCCCCCGGAGAGCGACAACTGCAGGGCCCAAAAAGAGGCCGGATTCTTTGGTGTTTTCTGAACCTTCTTTACTTGTCCTCAAATGGCCACCTCTTCCTCCTCCTCCTCGCATTTCCTCCCATAGCTCGCATTCGCATTCGCATCGCACTCACCCTCTCCTGCAAGCAAAGCTAAAGCTTCGGTTTGGTTATTTCCTTTCCTCGCCGCTTTTTTCTTTGCTTCTTGCGGTGGCCATGGCGGTAAGGAGGAGGAGGAGGAGGAGTAGAGCCGCGGCGGTTCTGGTGGCCGCGCTGCTTCTCGCCGCCTCCGCCGCCACCGCCTCCGCGGCGTCGTCTTACCCCGCGAAGGTGGTGACCGGGTTGCTGTCCAGCACGGCGTCGGCGGTGGTGAAGCAGCTCTGGTCGCTCAAATCGACCGCCACAAGGACGGGGTCGGCGGCGGCGGGGAGGTCGATGGTGAAGTACGAGGGCGGGTACGCGGTGGAGACGGTGTTCGACGGCAGCAAGCTGGGGATCGAGCCGCACGACGTCGAGGTCACCCCCTCCGGCGAGCTCCTCGTGCTCGACTCCATGAACAGCAACGTCTACAGGGTCCAGCTGCCTCTGTCGCGATATAGCAGACCGAAGCTTGTTGCTGGTTCGCCGGAAGGATTATCCGGCCATGTCGACGGGAGGCTGCGGGAGGCGAAGATGAACCATCCGAAGGGATTTACAGTGGACGATAGGGGAAACATTTATGTTGCAGATGCTATGAATATGGCAATAAGAAAGATCAGTGATACAGGGGTTACAACCATTGCTGGGGGGAAATCAATGAGAGGTGGGCACCTAGATGGGCCAAGTGATGATGCAAAATTTTCTACTGATTTTGAAATTCGCTACATCAGCAGTAGCTGCTCCCTCTTGGTTATTGATAGAGGAAACCAAGCAATTCGCGAGATTGCACTCCACAATGATGACTGTGAATATCAGTATGAAGCTGGTTTTCCACTAGGCATTGCATTGCTTTTTGCTGCTGGTTTCTTTGGGTACATGCTTGCATTGCTTCAGCGACAGGTTTTAGGGATGGTATCAACAGCAGATGAACCTCAGACTCCTCCAAGACCCAGCATTGCAAGCATCCCTCCATATCAGAAGCCACTAAAGCCTTCGCTTCGGCCTCCACTGATCCCAACCGAAGATCAAGCTGGGAAACATGAGGCTGAAGAGGGGTTCTTCACCTCAATCGGCAAGCTCATCGGAGGAGCAAAATCATCTGCGGTAGAGATATTCTCACGAAAGAAACGCCCAACCCATCAGTACCATCATCACCTTCAGCAGCAAAGAGCCAACCCTTGGCCGGTGCAAGAAAGTTACGCCATCCCACATGATGAGACACCGCCACCATTGGACATGAGAGCAGCTACTCCTCGGAAGAACTACGCCTTCATGACGAAGGAGCCTGAAAAAGTTCACCATGTCCGCCATGGCCGGCCTTACTTCAACGGCTGGGACATGCAGCATGCCCCTCAGCAACAGCCAGAGCAGCAGATGTACCACCAGCAGCACCTGCAGCAGCACAGGCAGTACTCCGCAGGCCCGCAAACTTTCTACGAGCAGAGCTGCGAGACGACAAACGAGATCGTCTTTGGTGCTGTCCAGGAGGTGGATACCAAGCGGCGAATGGTGGAGATCAAGGCCGTGAACTATGGGGACACATTCTATGAGCAGTACGGGATGCGGTATCGCAACAATTACATCGGCTACAACAACAGCAGCAACGGCAACAACAACAGCTACTACTATTAAACAACCAACCCTTCTGCCCTCAATTTTCCCCCTCTCTCTTTATCCCTGTTTCTTTCCTATATGATTAGATTTACCGCTCGCGTTTTCGCTTCTCCTGACCTCCGCGACGCCTGTAACAAAAGAAAGAAAAAGCGGGGGGGAAGTAGAGGCACTAATCTTCTTCAGTCCTGACCTGTGCAATGCAATGGCAAACACCTGGGGAGGGGTTTTTGTACTACACCCTGATGATGATCAGACACTCTTACACTACCATCCTGTACATATATTTTGTTGTTCACCAGCTCAGCTG]
[+] EMBL AK064807 [ TCCCATAGCTCGCATTCGCATTCGCATCGCACTCACCCTCTCCTGCAAGCAAAGCTAAAGCTTCGGTTTGGTTATTTCCTTTCCTCGCCGCTTTTTTCTTTGCTTCTTGCGGTGGCCATGGCGGTAAGGAGGAGGAGGAGGAGGAGTAGAGCCGCGGCGGTTCTGGTGGCCGCGCTGCTTCTCGCCGCCTCCGCCGCCACCGCCTCCGCGGCGTCGTCTTACCCCGCGAAGGTGGTGACCGGGTTGCTGTCCAGCACGGCGTCGGCGGTGGTGAAGCAGCTCTGGTCGCTCAAATCGACCGCCACAAGGACGGGGTCGGCGGCGGCGGGGAGGTCGATGGTGAAGTACGAGGGCGGGTACGCGGTGGAGACGGTGTTCGACGGCAGCAAGCTGGGGATCGAGCCGCACGACGTCGAGGTCACCCCCTCCGGCGAGCTCCTCGTGCTCGACTCCATGAACAGCAACGTCTACAGGGTCCAGCTGCCTCTGTCGCGATATAGCAGACCGAAGCTTGTTGCTGGTTCGCCGGAAGGATTATCCGGCCATGTCGACGGGAGGCTGCGGGAGGCGAAGATGAACCATCCGAAGGGATTTACAGTGGACGATAGGGGAAACATTTATGTTGCAGATGCTATGAATATGGCAATAAGAAAGATCAGTGATACAGGGGTTACAACCATTGCTGGGGGGAAATCAATGAGAGGTGGGCACCTAGATGGGCCAAGTGATGATGCAAAATTTTCTACTGATTTTGAAATCCGCTACATCAGCAGTAGCTGCTCCCTCTTGGTTATTGATAGAGGAAACCAAGCAATTCGCGAGATTGCACTCCACAATGATGACTGTGAATATCAGTATGAAGCTGGTTTTCCACTAGGCATTGCATTGCTTTTTGCTGCTGGTTTCTTTGGGTACATGCTTGCATTGCTTCAGCGACAGGTTTTAGGGATGGTATCAACAGCAGATGAACCTCAGACTCCTCCAAGACCCAGCATTGCAAGCATCCCTCCATATCAGAAGCCACTAAAGCCTTCGCTTCGGCCTCCACTGATCCCAACCGAAGATCAAGCTGGGAAACATGAGGCTGAAGAGGGGTTCTTCACCTCAATCGGCAAGCTCATCGGAGGAGCAAAATCATCTGCGGTAGAGATATTCTCACGAAAGAAACGCCCAACCCATCAGTACCATCATCACCTTCAGCAGCAAAGAGCCAACCCTTGGCCGGTGCAAGAAAGTTACGCCATCCCACATGATGAGACACCGCCACCATTGGACATGAGAGCAGCTACTCCTCGGAAGGACTACGCCTTCATGACGAAGGAGCCTGAAAAAGTTCACCATGTCCGCCATGGCCGGCCTTACTTCAACGGCTGGGACATGCAGCATGCCCCTCAGCAACAGCCAGAGCAGCAGATGTACCACCAGCAGCACCTGCAGCAGCACAGGCAGTACTCCGCAGGCCCGCAAACTTTCTACGAGCAGAGCTGCGAGACGACAAACGAGATCGTCTTTGGTGCTGTCCAGGAGGTGGACACCAAGCGGCGAATGGTGGAGATCAAGGCCGTGAACTATGGGGACACATTCTATGAGCAGTACGGGATGCGGTATCGCAACAATTACATCGGCTACAACAACAGCAGCAACGGCAACAACAACAGCTACTACTATTAAACAACCAACCCTTCTGCCCTCAATTTTCCCCCTCTCTCTTTATCCCTGTTTCTTTCCTATATGATTAGATTTACCGCTCGCGTTTTCGCTTCTCCTGACCTCCGCGACGCCTGTAACAAAAGAAAGAAAAAGCGGGGGGGAAGTAGAGGCACTAATCTTCTTCAGTCCTGACCTGTGCAATGCAATGGCAAACACCTGGGGAGGGG ]
[+] EMBL CA767564 [ AAGAGCCAACCCTTGGCCGGTGCAAGAAAGTTACGCCATCCCACATGATGAGACACCGCCACCATTGGACATGAGAGCAGCTACTCCTCACAAGAACTATGCCTTCATGACAAAGGAGCCTGAAAAAGTTCACCATGTCCGCCATGGCCGGCCTTACTTCAATGGCTGGGACATGCAGCATGCCCCTCAGCAACAGCCAGAGCAGCAGATGTACCACCAGCAGCACCTGCAGCAGCACAGGCAGTACTCCGCAGGCCCGCAAACTTTCTACGAGCAGAGCTGCGAGACGACAAACGAGATCGTCTTCGGTGCCGTCCAGGAGGTGGACACCAAGCGGCGAATGGTGGAGATCAAGGCCGTGAACTATGGGGACACATTCTATGAGCAGTACGGGATGCGATATCGCAACAATTACATCGGCTACAACAACAGCAGCAACGGCAACAACAACA ACTACTATTAGACAACCAACCCTTTTGCCCTCAATTTTCCCCCTCTCTCTTTATCCCTGTT TTTCCTATATGATTAGATTTACCGCTCCCGTTTTCGCTTCTCCTGACCTCCGCGACGCCTGTAACAAAAGAAAGAAAAAGC GGGGTGAAGTAGAGGCACTAAT ]
consensusID : consensus_10289#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1873 fasta sequence
[GAAAAGCTCGGATTCTTGGCGGTTTCCCCCACCATTTCCCCCTCCTCGATCTGGGCCTCCTCCCCGCAAGCGTGCGCCTCGCATTCCCACCGAGCGTGCCTACGTGCTGCGCTTTGCTGTGCTGCGGGAGGATGGAGGGTGGGGGGAGAGGCGGCGGCCCCGTGGTGGCGGCGCTGCTGCTGGCCGCGCTCCTCCTCGCCGCCGTCGCTCCGGCCTCCGCGTCGTCGTACCCCGCAAAGGTGGTGAGTGGGTTCCTCTCCAACGCGGCGTCGTCGGTGATGAAGCGGCTGTGGTCGCTCAAATCCACCACGAAGACAGGAAGCGGAGGGAAGTCGATGGTGAAGTACGAGGGCGGGTACACCGTGGAGACGGTCTTCGACGGGAGCAAGCTGGGGATCGAGCCCTACGCGGTGGAGGTCACCCAGGGCGGCGAGCTGCTCGTCATGGACTCCATGAACAGCAACATCTACAGGATCGCCCTGCCGCTGTCTCGATATAGCAGACCAAAGCTTGTAGCTGGTTCTCCGGAAGGATTTCCTGGTCATGTTGATGGAAGGCCTCGAGAGGCCAGGATGAACCATCCAAAGGGATTTACGGTGGACGGCAGGGGTAACATTTATGTGGCTGATGCTATGAACATGGCTATTAGAAAGATCAGTGACACAGGGGTTACAACTATTGCTGGGGGGAAATCAAGCAGAGGAGGGCATGTTGATGGACCAAGTGATGATGCAAAATTTTCTACTGATTTTGAAGTCCGCTATATTGGCAGTAGCTGCTCCCTTTTGGTGATTGACAGAGGAAACCAAGCGATTCGGGAGATTCAACTCAACTTCGATGACTGTGTATATCAGTATGAAGCTGGTTTTCCTCTAGGAGTTGCGGTGCTTCTTGCTGCTGCGTTCTTTGGCTACATGCTCGCGTTGCTCCAACGCAGGGTATTAGGGATGGTGTCAACAGAAGATGAACCTGAGACTCAGACTCCACTAAAAGCTAGCATTGCAAGCATCCCTCCATACCAGAAGCCGCTAAAACAATCTGTCCGTCCACCGTTAATCCCAAATGAGGATGAATCTGAGAAACAAGAGGTTGAAGAGGGGTTCTTTACCTCAATCGGTAAACTCATCGTGGGAGCCAAATCGTCTGTTGCAGAGATAGTTGGTGCAGCCTTTTCTAGAAAGAAGCGTTTAAACATTCATCAGCAGCAGGCTAGAGTACGCTCTTGGCCGGTTCAAGAAAGCTACGCCATCCCGCGGGATGAGACGCCTCCACCACTGGATACAAGAACTCCAACCCCACGCAAGAACTATGCTTTCATGTCAAAGGAGCCCGAAAAGATCCACCACATCCGGCATGGTCGGTCTCAGTTCAATGGTTGGAACGGAGACGCACCTCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAAATACATCACCAGCAGTACTTACAGCATCATAGGCAGTATTCATCAGGACCGCAAACTTTCTATGAGCCAAGCTGTGAGGCAACAAACGAGATTGTCTTTGGAGCCGTGCAGGAGGTAGACAGCAAGCGCCGCGCTGTGGAGATCAAACCCATGAACCATGGCGATCCGCAGTATGACCAAGATGGGTTGCGGCACCGCAGCAGCTACACCGGTTACAGCAACAACTGGTAGATGGCCAGATGTCCTTTTTTGCAGCTACATGATTAGATTTACTGCTCGTTAAGTTATTTTGCCGTCGTCGAATTTGTACTGCCTGAAACAGATAAATAGAAATTCAGGAAGTACCGGTGATATGGGCAAAGTCGAAAGCTGGTTTTTGCTGGATGAACGTCGTGATCTTAGACCTCTACTGATATATATATCTATGTAAATGGAATGTGTTTTTT]
[+] EMBL AK101253 [GAAAAGCTCGGATTCTTGGCGGTTTCCCCCACCATTTCCCCCTCCTCGATCTGGGCCTCCTCCCCGCAAGCGTGCGCCTCGCATTCCCACCGAGCGTGCCTACGTGCTGCGCTTTGCTGTGCTGCGGGAGGATGGAGGGTGGGGGGAGAGGCGGCGGCCCCGTGGTGGCGGCGCTGCTGCTGGCCGCGCTCCTCCTCGCCGCCGTCGCTCCGGCCTCCGCGTCGTCGTACCCCGCAAAGGTGGTGAGTGGGTTCCTCTCCAACGCGGCGTCGTCGGTGATGAAGCGGCTGTGGTCGCTCAAATCCACCACGAAGACAGGAAGCGGAGGGAAGTCGATGGTGAAGTACGAGGGCGGGTACACCGTGGAGACGGTCTTCGACGGGAGCAAGCTGGGGATCGAGCCCTACGCGGTGGAGGTCACCCAGGGCGGCGAGCTGCTCGTCATGGACTCCATGAACAGCAACATCTACAGGATCGCCCTGCCGCTGTCTCGATATAGCAGACCAAAGCTTGTAGCTGGTTCTCCGGAAGGATTTCCTGGTCATGTTGATGGAAGGCCTCGAGAGGCCAGGATGAACCATCCAAAGGGATTTACGGTGGACGGCAGGGGTAACATTTATGTGGCTGATGCTATGAACATGGCTATTAGAAAGATCAGTGACACAGGGGTTACAACTATTGCTGGGGGGAAATCAAGCAGAGGAGGGCATGTTGATGGACCAAGTGATGATGCAAAATTTTCTACTGATTTTGAAGTCCGCTATATTGGCAGTAGCTGCTCCCTTTTGGTGATTGACAGAGGAAACCAAGCGATTCGGGAGATTCAACTCAACTTCGATGACTGTGTATATCAGTATGAAGCTGGTTTTCCTCTAGGAGTTGCGGTGCTTCTTGCTGCTGCGTTCTTTGGCTACATGCTCGCGTTGCTCCAACGCAGGGTATTAGGGATGGTGTCAACAGAAGATGAACCTGAGACTCAGACTCCACTAAAAGCTAGCATTGCAAGCATCCCTCCATACCAGAAGCCGCTAAAACAATCTGTCCGTCCACCGTTAATCCCAAATGAGGATGAATCTGAGAAACAAGAGGTTGAAGAGGGGTTCTTTACCTCAATCGGTAAACTCATCGTGGGAGCCAAATCGTCTGTTGCAGAGATAGTTGGTGCAGCCTTTTCTAGAAAGAAGCGTTTAAACATTCATCAGCAGCAGGCTAGAGTACGCTCTTGGCCGGTTCAAGAAAGCTACGCCATCCCGCGGGATGAGACGCCTCCACCACTGGATACAAGAACTCCAACCCCACGCAAGAACTATGCTTTCATGTCAAAGGAGCCCGAAAAGATCCACCACATCCGGCATGGTCGGTCTCAGTTCAATGGTTGGAACGGAGACGCACCTCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAAATACATCACCAGCAGTACTTACAGCATCATAGGCAGTATTCATCAGGACCGCAAACTTTCTATGAGCCAAGCTGTGAGGCAACAAACGAGATTGTCTTTGGAGCCGTGCAGGAGGTAGACAGCAAGCGCCGCGCTGTGGAGATCAAACCCATGAACCATGGCGATCCGCAGTATGACCAAGATGGGTTGCGGCACCGCAGCAGCTACACCGGTTACAGCAACAACTGGTAGATGGCCAGATGTCCTTTTTTGCAGCTACATGATTAGATTTACTGCTCGTTAAGTTATTTTGCCGTCGTCGAATTTGTACTGCCTGAAACAGATAAATAGAAATTCAGGAAGTACCGGTGATATGGGCAAAGTCGAAAGCTGGTTTTTGCTGGATGAACGTCGTGATCTTAGACCTCTACTGATATATATATCTATGTAAATGGAATGTGTTT ]
[+] EMBL AK058253 [ GTTGCTCCAACGCAGGGTATTAGGGATGGTGTCAACAGGAGATGAACCTGAGACTCAGACTCCACTAAAAGCTAGCATTGCAAGCATCCCTCCATACCAGAAGCCGCTAAAACAATCTGTCCGTCCACCGTTAATCCCAAATGAGGATGAATCTGAGAAACAAGAGGTTGAAGAGGGGTTCTTTACCTCAATCGGTAAACTCATCGTGGGAGCCAAATCGTCTGTTGCAGAGATAGTTGGTGCAGCCTTTTCTAGAAAGAAGCGTTTAAACATTCATCAGCAGCAGGCTAGAGTACGCTCTTGGCCGGTTCAAGAAAGCTACGCCATCCCGCGGGATGAGACGCCTCCACCACTGGATACAAGAACTCCAACCCCACGCAAGAACTATGCTTTCATGTCAAAGGAGCCCGAAAAGATCCACCACATCCGGCATGGTCGGTCTCAGTTCAATGGTTGGAACGGAGACGCACCTCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAAATACATCACCAGCAGTACTTACAGCATCATAGGCAGTATTCATCAGGACCGCAAACTTTCTATGAGCCAAGCTGTGAGGCAACAAACGAGATTGTCTTTGGAGCCGTGCAGGAGGTAGACAGCAAGCGCCGCGCTGTGGAGATCAAACCCATGAACCATGGCGATCCGCAGTATGACCAAGATGGGTTGCGGCACCGCAGCAGCTACACCGGTTACAGCAACAACTGGTAAATGGCCAGATGTCCTTTTTTGCAGCTACATGATTAGATTTACTGCTCGTTAAGTTATTTTGCCGTCGTCGAATTTGTACTGCCTGAAACAGATAAATAGAAATTCAGGAAGTACCGGTGATATGGGCAAAGTCGAAAGCTGGTTTTTGCTGGATGAACGTCGTGATCTTAGACCTCTACTGATATATATATCTATGCAAATGGAATGTGTTT ]
[+] EMBL CA767366 [ TAAACATTCATCAGCAGCAGGCTAGAGTACGCTCTTGGCCGGTTCAAGAAAGCTACGCCATCCCGCGGGATGAGACGCCTCCACCACTGGATACAAGAACTCCAACCCCACGCAAGAACTATGCTTTCATGTCAAAGGAGCCCGAAAAGATCCACCACATCCGGCATGGTCGGTCTCAGTTCAATGGTTGGAACGGAGACGCACCTCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAAATACATCACCAGCAGTACTTACAGCATCATAGGCAGTATTCATCAGGACCGCAAACTTTCTATGAGCCAAGCTGTGAGGCAACAAACGAGATTGTCTTTGGAGCCGTGCAGGAGGTAGACAGCAAGCGCCGCGCTGTGGAGATCAAACCCATGAACCATGGCGATCCGCAGTATGACCAAGATGGGTTGCGGCACCGCAGCAGCTACACCGGTTACAGCAACAACTGGTAGATGGCCAGATGTCCTTTTTTGCAGCTACATGATTAGATTTACTGCTCGTTAAGTTATTTTGCCGTCGTCGAATTTGTACTGCCTGAAACAGATAAATAGAAATTCAGGTAGTACCGGTGATATGGGCAAAGTCGAAAGCTGGTTTTTGCTGGATGAACGTCGTGATCTTAGACCTCTACTGATATATATATCTATGTAAATGGAATGTGTTTTTT]
consensusID : consensus_10289#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 99 fasta sequence
[TACAGCATCATAGGCAGTATTCATCAGGACCGCAATCTTTCTATGATCCAAGCTGTGAGGCAACAAACTAGATTTTCTTTCTACCCTTTCAGGAGGTAG]
[+] EMBL AA750785 [TACAGCATCATAGGCAGTATTCATCAGGACCGCAATCTTTCTATGATCCAAGCTGTGAGGCAACAAACTAGATTTTCTTTCTACCCTTTCAGGAGGTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10289#1 ------------------------------------------------------------
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 ACTGTCTCACTCTCTCTTGCCCACATTTTTTTCCCCCGGAGAGCGACAACTGCAGGGCCC 60
consensus_10289#1 ------------------------------------------------------------
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 AAAAAGAGGCCGGATTCTTTGGTGTTTTCTGAACCTTCTTTACTTGTCCTCAAATGGCCA 120
consensus_10289#1 ----------GAAAAGCTCGGATTCTTGGCGGTTTCCCCCACCATTTCCCCCTCCTCGAT 50
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 CCTCTTCCTCCTCCTCCTCGCATTTCCTCCCATAGCTCGCATTCGCATTCGCATCGCACT 180
consensus_10289#1 CTGGGCCTCCTCCCCGCAA-GCGTGCGCCTCGCATTCCCACCGAGCGTGCCTA--CGTGC 107
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 CACCCTCTCCTGCAAGCAAAGCTAAAGCTTCGGTTTGGTTATTTCCTTTCCTCGCCGCTT 240
consensus_10289#1 TGCGCTTTGCTGTGCTGCGGGAGGATGGAGGGTGGGGGGAGAGGCGGCGGCCCCGTGGTG 167
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 TTTTCTTTGCTTCTTGCGGTGGCCATGGCGGTAAGGAGGAGGAGGAGGAGGAGTAGAGCC 300
consensus_10289#1 GCGGCGCTGCTGCTGGCCGCGCTCCTCCTCGCCGCC---GTCGCTCCGGCCTCCGCGTCG 224
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 GCGGCGGTTCTGGTGGCCGCGCTGCTTCTCGCCGCCTCCGCCGCCACCGCCTCCGCGGCG 360
consensus_10289#1 TCGT---ACCCCGCAAAGGTGGTGAGTGGGTTCCTCTCCAACGCGGCGTCGTCGGTGATG 281
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 TCGTCTTACCCCGCGAAGGTGGTGACCGGGTTGCTGTCCAGCACGGCGTCGGCGGTGGTG 420
consensus_10289#1 AAGCGGCTGTGGTCGCTCAAATC---CACCACGAAGACAGGA--AGCGG----AGGGAAG 332
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 AAGCAGCTCTGGTCGCTCAAATCGACCGCCACAAGGACGGGGTCGGCGGCGGCGGGGAGG 480
consensus_10289#1 TCGATGGTGAAGTACGAGGGCGGGTACACCGTGGAGACGGTCTTCGACGGGAGCAAGCTG 392
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 TCGATGGTGAAGTACGAGGGCGGGTACGCGGTGGAGACGGTGTTCGACGGCAGCAAGCTG 540
consensus_10289#1 GGGATCGAGCCCTACGCGGTGGAGGTCACCCAGGGCGGCGAGCTGCTCGTCATGGACTCC 452
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 GGGATCGAGCCGCACGACGTCGAGGTCACCCCCTCCGGCGAGCTCCTCGTGCTCGACTCC 600
consensus_10289#1 ATGAACAGCAACATCTACAGGATCGCCCTGCCGCTGTCTCGATATAGCAGACCAAAGCTT 512
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 ATGAACAGCAACGTCTACAGGGTCCAGCTGCCTCTGTCGCGATATAGCAGACCGAAGCTT 660
consensus_10289#1 GTAGCTGGTTCTCCGGAAGGATTTCCTGGTCATGTTGATGGAAGGCCTCGAGAGGCCAGG 572
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 GTTGCTGGTTCGCCGGAAGGATTATCCGGCCATGTCGACGGGAGGCTGCGGGAGGCGAAG 720
consensus_10289#1 ATGAACCATCCAAAGGGATTTACGGTGGACGGCAGGGGTAACATTTATGTGGCTGATGCT 632
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 ATGAACCATCCGAAGGGATTTACAGTGGACGATAGGGGAAACATTTATGTTGCAGATGCT 780
consensus_10289#1 ATGAACATGGCTATTAGAAAGATCAGTGACACAGGGGTTACAACTATTGCTGGGGGGAAA 692
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 ATGAATATGGCAATAAGAAAGATCAGTGATACAGGGGTTACAACCATTGCTGGGGGGAAA 840
consensus_10289#1 TCAAGCAGAGGAGGGCATGTTGATGGACCAAGTGATGATGCAAAATTTTCTACTGATTTT 752
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 TCAATGAGAGGTGGGCACCTAGATGGGCCAAGTGATGATGCAAAATTTTCTACTGATTTT 900
consensus_10289#1 GAAGTCCGCTATATTGGCAGTAGCTGCTCCCTTTTGGTGATTGACAGAGGAAACCAAGCG 812
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 GAAATTCGCTACATCAGCAGTAGCTGCTCCCTCTTGGTTATTGATAGAGGAAACCAAGCA 960
consensus_10289#1 ATTCGGGAGATTCAACTCAACTTCGATGACTGTGTATATCAGTATGAAGCTGGTTTTCCT 872
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 ATTCGCGAGATTGCACTCCACAATGATGACTGTGAATATCAGTATGAAGCTGGTTTTCCA 1020
consensus_10289#1 CTAGGAGTTGCGGTGCTTCTTGCTGCTGCGTTCTTTGGCTACATGCTCGCGTTGCTCCAA 932
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 CTAGGCATTGCATTGCTTTTTGCTGCTGGTTTCTTTGGGTACATGCTTGCATTGCTTCAG 1080
consensus_10289#1 CGCAGGGTATTAGGGATGGTGTCAACAGAAGATGAACCTGAGACTCAGACTCCACTAAAA 992
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 CGACAGGTTTTAGGGATGGTATCAACAGCAGATGAACCT------CAGACTCCTCCAAGA 1134
consensus_10289#1 GCTAGCATTGCAAGCATCCCTCCATACCAGAAGCCGCTAAAACAATCTGTCCGTCCACCG 1052
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 CCCAGCATTGCAAGCATCCCTCCATATCAGAAGCCACTAAAGCCTTCGCTTCGGCCTCCA 1194
consensus_10289#1 TTAATCCCAAATGAGGATGAATCTGAGAAACAAGAGGTTGAAGAGGGGTTCTTTACCTCA 1112
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 CTGATCCCAACCGAAGATCAAGCTGGGAAACATGAGGCTGAAGAGGGGTTCTTCACCTCA 1254
consensus_10289#1 ATCGGTAAACTCATCGTGGGAGCCAAATCGTCTGTTGCAGAGATAGTTGGTGCAGCCTTT 1172
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 ATCGGCAAGCTCATCGGAGGAGCAAAATCATCTGCGGTAGAGATATTCTCACGAAAGAAA 1314
consensus_10289#1 TCTAGAAAGAAGCGTTTAAACATTCATCAGCAGCAGGCTAGAGTACGCTCTTGGCCGGTT 1232
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 CGCCCAACCCATCAGTACCATCATCACCTTCAGCAGCAAAGAGCCAACCCTTGGCCGGTG 1374
consensus_10289#1 CAAGAAAGCTACGCCATCCCGCGGGATGAGACGCCTCCACCACTGGATACAAGAACTCCA 1292
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 CAAGAAAGTTACGCCATCCCACATGATGAGACACCGCCACCATTGGACATGAGAGCAGCT 1434
consensus_10289#1 ACCCCACGCAAGAACTATGCTTTCATGTCAAAGGAGCCCGAAAAGATCCACCACATCCGG 1352
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 ACTCCTCGGAAGAACTACGCCTTCATGACGAAGGAGCCTGAAAAAGTTCACCATGTCCGC 1494
consensus_10289#1 CATGGTCGGTCTCAGTTCAATGGTTGGAACGGAGACGCACCTCAGCAGCAGCAGCAACAG 1412
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 CATGGCCGGCCTTACTTCAACGGCTGGGACATG---------CAGCATGCCCCTCAGCAA 1545
consensus_10289#1 CAGCAGCAGCAGCAAATACATCACCAGCAGTACTTACAGCATCATAGGCAGTATTCATCA 1472
consensus_10289#2 ----------------------------------TACAGCATCATAGGCAGTATTCATCA 26
consensus_10289#0 CAGCCAGAGCAGCAGATGTACCACCAGCAGCACCTGCAGCAGCACAGGCAGTACTCCGCA 1605
* ***** ** ******** ** **
consensus_10289#1 GGACCGCAAACTTTCTATGAGCCAAGCTGTGAGGCAACAAACGAGATTGTCTTTGGAGCC 1532
consensus_10289#2 GGACCGCAATCTTTCTATGATCCAAGCTGTGAGGCAACAAACTAGATTTTCTTTCTACCC 86
consensus_10289#0 GGCCCGCAAACTTTCTACGAGCAGAGCTGCGAGACGACAAACGAGATCGTCTTTGGTGCT 1665
** ****** ******* ** * ***** *** * ****** **** ***** *
consensus_10289#1 GTGCAGGAGGTAGACAGCAAGCGCCGCGCTGTGGAGATCAAACCCATGAACCATGGCGAT 1592
consensus_10289#2 TTTCAGGAGGTAG----------------------------------------------- 99
consensus_10289#0 GTCCAGGAGGTGGACACCAAGCGGCGAATGGTGGAGATCAAGGCCGTGAACTATGGGGAC 1725
* ******** *
consensus_10289#1 CCGCAGTATGACCAAGATGGGTTGCGGCACCGCAGCAGCTACACCGGTTACAGCAACAAC 1652
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 ACATTCTATGAGCAGTACGGGATGCGGTATCGCAACAATTACATCGGCTACAACAACAGC 1785
consensus_10289#1 TGGTAGATGGCCAGATGTCCTTTTTTGCAGCTACATGATTAGATTTACTGCTCGTTAAGT 1712
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 AGCAACGGCAACA-ACAACAGCTACTACTATTAAACAACCAACCCTTCTGCCCTCAATTT 1844
consensus_10289#1 TATTTTGCCGTCGTCGAATTTGTA-CTGCCTGAAACAGATAAATAGAAATTCAGGA---- 1767
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 TCCCCCTCTCTCTTTATCCCTGTTTCTTTCCTATATGATTAGATTTACCGCTCGCGTTTT 1904
consensus_10289#1 -AGTACCGGTGATATGGGCAAAGTC------GAAAGCTGGTTTTTGCTGGATGAACGTCG 1820
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 CGCTTCTCCTGACCTCCGCGACGCCTGTAACAAAAGAAAGAAAAAGCGGGGGGGAAGTAG 1964
consensus_10289#1 TGATCTTAGACCTCTACTGATAT-ATATATCTATGTAAATGGAATGTGTTTTTT------ 1873
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 AGGCACTAATCTTCTTCAGTCCTGACCTGTGCAATGCAATGGCAAACACCTGGGGAGGGG 2024
consensus_10289#1 ------------------------------------------------------------
consensus_10289#2 ------------------------------------------------------------
consensus_10289#0 TTTTTGTACTACACCCTGATGATGATCAGACACTCTTACACTACCATCCTGTACATATAT 2084
consensus_10289#1 -----------------------
consensus_10289#2 -----------------------
consensus_10289#0 TTTGTTGTTCACCAGCTCAGCTG 2107
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||