These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10290#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1695 fasta sequence [TCAAGTCGCAAGGGGGCCGAAGGGGAGAGGAGGATCCAAACCCCAAACCCCCCCCGATCCCCACGACGCGCCGCCGCCCCGCACCGAGATGGCCGCCGGGGACGCCGCCAGGGCGCCACCGGCC-GCGGAGGCGCAGTCGCTGGTGGAGTCCTTCTGCGGCGTCACCTCCGCGACGCCCCAGGAGGCCGCCTTCTTCCTCGAGAGCCACAACTGGGCCCTCGAGTCCGCCGTCCGCTCCTTCTACGACTCCGCCGACGGCG-ACGCC-TCCGCCGCCGCCGCCGACGCGGCCGATCCGCCCCCCCGCCAGCCCCCGCCTCCCCCGCCCGCCAGCGATGGCGCCGACTCCGACGACGAGGACTACGTCGTCGGCGGCGGCGACGAGGATCAGGACGACGAGGACTACGTCGGGGATGGGGATGGGGACGGGGAGGGGGACGATGATGACGACGAGGACGCCGCCCTCGCCGCGGAGGAGGCTGCGGCGTCGGACGAGCGGAGGAGGCCGCTGAAGAGGCTGAAGAGGGGCCAAAACGCGCGTGGCGGGAGCGGCAGCGGGAAGGGGAATGTGCGGACGCTCTCCGATCTCGGCGGTGGCAAGGACAGCGCGGGGTCCGAGGACTCGGAGGACGACGAGTATAAGCCGCCGCAGGAATTATACACCGGAGGCGAAAAGAGTGGAATGGTCGTTAGAGATCGATCTAAGCGTAAAAACCGTGCGGATGAGATCTTTAAGGAAGCTAAGAGGAAGGGAGCAAAGAAAGGTTCATTTGAGGCTCGCCGGAAATCAAAGAGCTTTGCTGGGACAGGCAGACTTCTAACAGGTGAATCTGCAGAGCCTGTTGCGCCTCAGTCACCAGAAAGTATTGTCCACAACATCTATTTTTGGACCAATGGGTTCACAGTAAATGATGGTCCACTTAGAAGTTTTGATGATCCAGCAAATGCTTCCTTTTTAAAGAGCATCAAGAATTCTGAATGCCCATCTGAGCTTGAGCCAGCTGATAAGAAGTCTCAGGTGAATGTGAATCTTGTTCGGAAAGAGGAAAAGTGTCCTGAACCTGTCAAGCGCGCAGCTCCATTCCATGGAGCGGCAAAAACTCTGGGGACGCCTTCTGATAATAACTCCACACCTCCGGAGGCTACTTCTGCAGCAGCCGCTGCTTCCAGCACAGAGACCGCCTCCAAGACCGTGACGATCACAGTGGATGATTCTTTGCCATCGACCTCTCTGCAGATCAGGTTCGTGGACGGCAGCCGCATGGTCGCGCATTTCAACACGAGCCACACGATCGCGGATGTGCGGGCGTTCATCGACACAACAAGGCCAGGAGAAGCCGGTGATTACACGCTCCAGGCCGGGTTCCCCCCAAAGCCGCTCGATGACATGAGCAAGACTATCGAGGAAGCTGGCGTCGCCAACTCGGTAATCATTCAGACAGCGTAGCTTCGACAGAAAACAGTTTGTTGA-CCCCCCCTCTCTTCAACAAAGCACA--CTATCCCATCTGAAGCGTGCAAATTTCCTCCCCTATCTTTTCATGCCAAGTTTTCTTTTTCTCTTGAATCTACCCTTTTCTGCCTTCCATGGCTTCGACCAATAGCTGCTCCAGGTATGAAGAGTGTAAAACAGTGAGATCTGGGTATCTCGTCCTTATTCATCTATAGTGCTATACTTTTGCTCTAAAAAAAAAAAAAAAA] [+] EMBL AK122074 [TCAAGTCGCAAGGGGGCCGAAGGGGAGAGGAGGATCCAAACCCCAAACCCCCCCCGATCCCCACGACGCGCCGCCGCCCCGCACCGAGATGGCCGCCGGGGACGCCGCCAGGGCGCCACCGGCC GCGGAGGCGCAGTCGCTGGTGGAGTCCTTCTGCGGCGTCACCTCCGCGACGCCCCAGGAGGCCGCCTCCTTCCTCGAGAGCCACAACTGGGCCCTCGAGTCCGCCGTCCGCTCCTTCTACGACTCCGCCGACGGCG ACGCC TCCGCCGCCGCCGCCGACGCGGCCGATCCGCCCCCCCGCCAGCCCCCGCCTCCCCCGCCCGCCAGCGATGGCGCCGACTCCGACGACGAGGACTACGTCGTCGGCGGCGGCGACGAGGATCAGGACGACGAGGACTACGTCGGGGATGGGGATGGGGACGGGGAGGGGGACGATGATGACGACGAGGACGCCGCCCTCGCCGCGGAGGAGGCTGCGGCGTCGGACGAGCGGAGGAGGCCGCTGAAGAGGCTGAAGAGGGGCCAAAACGCGCGTGGCGGGAGCGGCAGCGGGAAGGGGAATGTGCGGACGCTCTCCGATCTCGGCGGTGGCAAGGACAGCGCGGGGTCCGAGGACTCGGAGGACGACGAGTATAAGCCGCCGCAGGAATTATACACCGGAGGCGAAAAGAGTGGAATGGTCGTTAGAGATCGATCTAAGCGTAAAAACCGTGCGGATGAGATCTTTAAGGAAGCTAAGAGGAAGGGAGCAAAGAAAGGTTCATTTGAGGCTCGCCGGAAATCAAAGAGCTTTGCTGGGACAGGCAGACTTCTAACAGGTGAATCTGCAGAGCCTGTTGCGCCTCAGTCACCAGAAAGTATTGTCCACAACATCTATTTTTGGACCAATGGGTTCACAGTAAATGATGGTCCACTTAGAAGTTTTGATGATCCAGCAAATGCTTCCTTTTTAAAGAGCATCAAGAATTCTGAATGCCCATCTGAGCTTGAGCCAGCTGATAAGAAGTCTCAGGTGAATGTGAATCTTGTTCGGAAAGAGGAAAAGTGTCCTGAACCTGTCAAGCGCGCAGCTCCATTCCATGGAGCGGCAAAAACTCTGGGGACGCCTTCTGATAATAACTCCACACCTCCGGAGGCTACTTCTGCAGCAGCCGCTGCTTCCAGCACAGAGACCGCCTCCAAGACCGTGACGATCACAGTGGATGATTCTTTGCCATCGACCTCTCTGCAGATCAGGTTCGTGGACGGCAGCCGCATGGTCGCGCATTTCAACACGAGCCACACGATCGCGGATGTGCGGGCGTTCATCGACACAACAAGGCCAGGAGAAGCCGGTGATTACACGCTCCAGGCCGGGTTCCCCCCAAAGCCGCTCGATGACATGAGCAAGACTATCGAGGAAGCTGGCGTCGCCAACTCGGTAATCATTCAGACAGCGTAGCTTCGACAGAAAACAGTTTGTTGA CCCCCCCTCTCTTCAACAAAGCACA CTATCCCATCTGAAGCGTGCAAATTTCCTCCCCTATCTTTTCATGCCAAGTTTTCTTTTTCTCTTGAATCTACCCTTTTCTGCCTTCCATGGCTTCGACCAATAGCTGCTCCAGGTATGAAGAGTGTAAAACAGTGAGATCTGGGTATCTCGTCCTTATTCATCTATAGTGCTAT ] [+] EMBL C74562 [ nGGCCGAAGGGGAGAGGAGGATCCAAACCCCANNNNCCCCCCGATCCCCACGACGCGCCGCCGCCCCGCACCGAGATGGCCGCCGGGGACGCCGCCAGGGCGCCACCGGCC GCGGAGGCGCAGTCGCTGGTGGAGTCCTTCTGCGGCGTCACNTCCGCGACGNCCCAGGAGGCCGCCTTCTTCCTCGANAGCNACAACTGGGCCCTCGAGTCCGCCGTCCGCTCCTTCTACGACTCCG ] [+] EMBL AU029595 [ ACCCCCCCCGATCCCCACGACGCGCCGCCGCCCCGCACCGAGATGGCCGCCGGGGACGCCGCCANGGCGCCACCGGCCGGCGGAGGCGCAGTCGCTGGTGGAGTCCTTCTGCGGCGTCACCTCCGCGACGCCCCAGGAGGCCGCCTTCTTCCTCGAGAGCCACAACTGGGCCCTCGAGTCCGCCGTCCGCTCCTTCTACGACTCCGCCGACGGCGAACGCCTTCCGCCGCCGCCGCCGA ] [-] EMBL CA760218 [ TAAGAAGTCTCAGGTGAATGTGATTCNTGTTCGGAAAGAGGAAAAGTGTCCTGAACCTGTCGAGCGCGCAGCTCCATTCCATGGAGCGGCAAAAACTCTGGGGACGCCTTCTGATAATAACTCCACACCTCCGGAGGCTACTTTTGCAGCAGCCGCTGCTTCCAGCACAGAGACCGCCTCCAAGACCGTGACGATCACAGTGGATGATTCTTTGCCATCGACCTCTCTGCAGATCAGGTTCGTGGACGGCAGCCGCATGGTCGCGCGTTTCAACACGAGCCACACGATCGCGGATGTGCGGGTGTTCATCGACACAACAAGGCCAGGAGAAGCCGGTGATTACACGCTCCAGGCCGGGTTCCCCCCAAAGCCGCTCGATGACATGAGCAAGACTATCGAGGAAGCTGGCGTCGCCAACTCGGTAATCATTCAGACAGCGTAGCTTCGACAGAAAACAGTTTGTTGACCCCCCCCTCTTTTCAACAAAGCACACTCTATCCCATTTGAAGCGTGCAAATTTCCTCCCCTATCTTTTCATGCCAAGTTTTCTTTTTCTCTTGAATCTACCCTTTTCTGCCTTCCATGGCTTCGACCAATAGCTGCTCCAGGTATGAAGAGTGTAAAACAGCGAGATCTGGGTATCTCGTCCTTATTCATCTATAGTGCTATACTTTTGCTCTAAAAAAAAAAAAAAAA] [+] EMBL AU172954 [ TGCAGCAGCCGCTGCTTCCAGCACAGAGACCGCCTCCAAGACCGTGACGATCACAGTGGATGATTCTTTGCCATCGACCTCTCTGCAGATCAGGTTCGTGGACGGCAGCCGCATGGTCGCGCATTTCAACACGAGCCACACGATCGCGGATGTGCGGGCGTTCATCGACACAACAAGGCCAGGAGAAGCCGGTGATTACACGCTCCAGGCCGGGTTCCCCCCAAAGCCGCTCGATGACATGAGCAAGACTATCGAGGAAGCTGGCGTCGCCAACTCGGTAATCATTCAGACAGCGTAGCTTCGACAGAAAACAGTTTGTTGA CCCCCCCTCTCTTCAACAAAGCACA CTATCCCATCTGAAGCGTGCAAATTTCCTCCCCTATCTTTTCATGCCAAGTTTTCTTTTTCTCTTGAATCTACCCTTTTC ] [+] EMBL AU058314 [ TGGTCGCGCATTTCAACACGAGCCACACGATCGCGGATGTGCGGGCGTTCATCGACACAACAAGGCCCGGAGAAGCCGGTGATTACACGCTCCAGGCCGGGTTCCCCCCAAAGCCGCTCGATGACATGAGCAAGACTATCGAGGAAGCTGGCGTCGCCAACTCGGTAATCATTCAGACAGCGTAGCTTCGACAGAAAACAGTTTGTTGA CCCCCCCTCTCTTCAACAAAGCACA CTATCCCATCTGAAGCGTGCAAATTTCCTCCCCTATCTTTTCATGCCAAGTTTTCTTTTTCTCTTGAATCTACCCTTTTCTGCCTTCCATGGCTTCGACCAATAGCTGCTCCAGGTATGAAGNGTGTAAAACAGTGAGATCTGGGTATCTCGTCCTTATTCATCTATNGTGCTATACTTTTGCTCTAAAAAAAAAAA ] consensusID : consensus_10290#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence [GCATGGTCGCGCATTTCAACACGAGCCACACGATCGCGGATGTNCGGGCGTTCATCGACACATCAAGGTCCAGGAGCANGCCGGTGATTACACGCTACNAGGTCCGGGTTCCCCCCAAAGCCGNTCGATGACATGAGCAAGACTATCGAGGAAGCTGGCNTCGCNAACTCGGTAATCATTCAGACAGCGTAGCTTCGACAGAAAACAGTTTGTTGACCCCCCATCTCTTCAACAAAGCACACTATCCNATTTGAAGCGTGCAAATTTCCTCCCCTATCTTTTCATGCCAAGTTTTCTTTTTCTCTTGAATCTACCCTTTTCTGCCTTCCATGGCTTCGACCAATAGCTGCTCCAGGTATGAAGAGTGTAAAACAGTGAGATCTGGGTATCTCGTCCTTATTAAAAAAAAAAAAA] [+] EMBL AU029596 [GCATGGTCGCGCATTTCAACACGAGCCACACGATCGCGGATGTNCGGGCGTTCATCGACACATCAAGGTCCAGGAGCANGCCGGTGATTACACGCTACNAGGTCCGGGTTCCCCCCAAAGCCGNTCGATGACATGAGCAAGACTATCGAGGAAGCTGGCNTCGCNAACTCGGTAATCATTCAGACAGCGTAGCTTCGACAGAAAACAGTTTGTTGACCCCCCATCTCTTCAACAAAGCACACTATCCNATTTGAAGCGTGCAAATTTCCTCCCCTATCTTTTCATGCCAAGTTTTCTTTTTCTCTTGAATCTACCCTTTTCTGCCTTCCATGGCTTCGACCAATAGCTGCTCCAGGTATGAAGAGTGTAAAACAGTGAGATCTGGGTATCTCGTCCTTATTAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10290#0 TCAAGTCGCAAGGGGGCCGAAGGGGAGAGGAGGATCCAAACCCCAAACCCCCCCCGATCC 60 consensus_10290#1 ------------------------------------------------------------ consensus_10290#0 CCACGACGCGCCGCCGCCCCGCACCGAGATGGCCGCCGGGGACGCCGCCAGGGCGCCACC 120 consensus_10290#1 ------------------------------------------------------------ consensus_10290#0 GGCCGCGGAGGCGCAGTCGCTGGTGGAGTCCTTCTGCGGCGTCACCTCCGCGACGCCCCA 180 consensus_10290#1 ------------------------------------------------------------ consensus_10290#0 GGAGGCCGCCTTCTTCCTCGAGAGCCACAACTGGGCCCTCGAGTCCGCCGTCCGCTCCTT 240 consensus_10290#1 ------------------------------------------------------------ consensus_10290#0 CTACGACTCCGCCGACGGCGACGCCTCCGCCGCCGCCGCCGACGCGGCCGATCCGCCCCC 300 consensus_10290#1 ------------------------------------------------------------ consensus_10290#0 CCGCCAGCCCCCGCCTCCCCCGCCCGCCAGCGATGGCGCCGACTCCGACGACGAGGACTA 360 consensus_10290#1 ------------------------------------------------------------ consensus_10290#0 CGTCGTCGGCGGCGGCGACGAGGATCAGGACGACGAGGACTACGTCGGGGATGGGGATGG 420 consensus_10290#1 ------------------------------------------------------------ consensus_10290#0 GGACGGGGAGGGGGACGATGATGACGACGAGGACGCCGCCCTCGCCGCGGAGGAGGCTGC 480 consensus_10290#1 ------------------------------------------------------------ consensus_10290#0 GGCGTCGGACGAGCGGAGGAGGCCGCTGAAGAGGCTGAAGAGGGGCCAAAACGCGCGTGG 540 consensus_10290#1 ------------------------------------------------------------ consensus_10290#0 CGGGAGCGGCAGCGGGAAGGGGAATGTGCGGACGCTCTCCGATCTCGGCGGTGGCAAGGA 600 consensus_10290#1 ------------------------------------------------------------ consensus_10290#0 CAGCGCGGGGTCCGAGGACTCGGAGGACGACGAGTATAAGCCGCCGCAGGAATTATACAC 660 consensus_10290#1 ------------------------------------------------------------ consensus_10290#0 CGGAGGCGAAAAGAGTGGAATGGTCGTTAGAGATCGATCTAAGCGTAAAAACCGTGCGGA 720 consensus_10290#1 ------------------------------------------------------------ consensus_10290#0 TGAGATCTTTAAGGAAGCTAAGAGGAAGGGAGCAAAGAAAGGTTCATTTGAGGCTCGCCG 780 consensus_10290#1 ------------------------------------------------------------ consensus_10290#0 GAAATCAAAGAGCTTTGCTGGGACAGGCAGACTTCTAACAGGTGAATCTGCAGAGCCTGT 840 consensus_10290#1 ------------------------------------------------------------ consensus_10290#0 TGCGCCTCAGTCACCAGAAAGTATTGTCCACAACATCTATTTTTGGACCAATGGGTTCAC 900 consensus_10290#1 ------------------------------------------------------------ consensus_10290#0 AGTAAATGATGGTCCACTTAGAAGTTTTGATGATCCAGCAAATGCTTCCTTTTTAAAGAG 960 consensus_10290#1 ------------------------------------------------------------ consensus_10290#0 CATCAAGAATTCTGAATGCCCATCTGAGCTTGAGCCAGCTGATAAGAAGTCTCAGGTGAA 1020 consensus_10290#1 ------------------------------------------------------------ consensus_10290#0 TGTGAATCTTGTTCGGAAAGAGGAAAAGTGTCCTGAACCTGTCAAGCGCGCAGCTCCATT 1080 consensus_10290#1 ------------------------------------------------------------ consensus_10290#0 CCATGGAGCGGCAAAAACTCTGGGGACGCCTTCTGATAATAACTCCACACCTCCGGAGGC 1140 consensus_10290#1 ------------------------------------------------------------ consensus_10290#0 TACTTCTGCAGCAGCCGCTGCTTCCAGCACAGAGACCGCCTCCAAGACCGTGACGATCAC 1200 consensus_10290#1 ------------------------------------------------------------ consensus_10290#0 AGTGGATGATTCTTTGCCATCGACCTCTCTGCAGATCAGGTTCGTGGACGGCAGCCGCAT 1260 consensus_10290#1 --------------------------------------------------------GCAT 4 **** consensus_10290#0 GGTCGCGCATTTCAACACGAGCCACACGATCGCGGATGTGCGGGCGTTCATCGACACAAC 1320 consensus_10290#1 GGTCGCGCATTTCAACACGAGCCACACGATCGCGGATGTNCGGGCGTTCATCGACACATC 64 *************************************** ****************** * consensus_10290#0 AAGG-CCAGGAG-AAGCCGGTGATTACACGCTCCAGG--CCGGGTTCCCCCCAAAGCCGC 1376 consensus_10290#1 AAGGTCCAGGAGCANGCCGGTGATTACACGCTACNAGGTCCGGGTTCCCCCCAAAGCCGN 124 **** ******* * ***************** * * ******************** consensus_10290#0 TCGATGACATGAGCAAGACTATCGAGGAAGCTGGCGTCGCCAACTCGGTAATCATTCAGA 1436 consensus_10290#1 TCGATGACATGAGCAAGACTATCGAGGAAGCTGGCNTCGCNAACTCGGTAATCATTCAGA 184 *********************************** **** ******************* consensus_10290#0 CAGCGTAGCTTCGACAGAAAACAGTTTGTTGACCCCCCCTCTCTTCAACAAAGCACACTA 1496 consensus_10290#1 CAGCGTAGCTTCGACAGAAAACAGTTTGTTGACCCCCCATCTCTTCAACAAAGCACACTA 244 ************************************** ********************* consensus_10290#0 TCCCATCTGAAGCGTGCAAATTTCCTCCCCTATCTTTTCATGCCAAGTTTTCTTTTTCTC 1556 consensus_10290#1 TCCNATTTGAAGCGTGCAAATTTCCTCCCCTATCTTTTCATGCCAAGTTTTCTTTTTCTC 304 *** ** ***************************************************** consensus_10290#0 TTGAATCTACCCTTTTCTGCCTTCCATGGCTTCGACCAATAGCTGCTCCAGGTATGAAGA 1616 consensus_10290#1 TTGAATCTACCCTTTTCTGCCTTCCATGGCTTCGACCAATAGCTGCTCCAGGTATGAAGA 364 ************************************************************ consensus_10290#0 GTGTAAAACAGTGAGATCTGGGTATCTCGTCCTTATTCATCTATAGTGCTATACTTTTGC 1676 consensus_10290#1 GTGTAAAACAGTGAGATCTGGGTATCTCGTCCTTATTAAAAAAAAAAAAA---------- 414 ************************************* * * * consensus_10290#0 TCTAAAAAAAAAAAAAAAA 1695 consensus_10290#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||