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Oryza sativa
cluster # 10295 cluster # 10295       Sequences # 7       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10295#0 length = 2105 sequences # 3  
consensus_10295#1 length = 899 sequences # 1  
consensus_10295#2 length = 469 sequences # 2  
consensus_10295#3 length = 309 sequences # 1  

consensusID : consensus_10295#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2105
fasta sequence
                              [ACGAAGCAGAGGCCAACCGGAGAGGGCGGAGACGAATCGCCGGCCCCTCCTCTCGCCGGCGGGCGGCCGCCAGGCCGGGAGGTCGGCCGGCGACGCGCCACGGCGACCAACCTGGTTACTACTGGAGATTACTACTTCATATTTGCTCATTGGCATATTATTAGTAGATGGGGACTGTTTACTTCACATTGATTTTGCTTGCTCCATACAGAGGCAGAGAATCATTATGGAGGTTAGTGTATTGATGTTGTGTTTTTGTTTTTGTTTTTGTTTTTTTTTTCTGCTGTGTTACGCTGACCTTGAGGTTTCTAGTATAGGTTTTAGATAGTGACTCTTTTATGGTCCTTAGAAAGTATGGAGAGGTATACATATATCTTACTGTTTAACTATTTTTTAAAGAAGGGCAAAAGTTATGTCATGTACATGTCTAGATTCATTAACATCTATATGAATGTGGGCAATCCTAAAAAATCTTTGTGTTTAATCATTAAGTATGATAACAAATCAAAGTATTTTGAAGTATGAATCTAATTGTACAAGTTTTATACACTAAATGTACTTTTATGTTAACTAATTATTAGTCAAAATCTTTCACATTTGACTTTCTGAAATCAAAATACTACTTATAAAAGCAGGGAGTACGTTTTAAAGGCTGAGGAAAAGGCATAAGGGCATCAGCCCCAGTTCCATTTTTATTAAATTAAGCCAACAATTCTTGTACAGTTTGAGTTCGATCAGCACCATATCTACATTTCATTAGGCCATCTTAAATAGAGATCATGTGATCTTTGTTTTTTTAATCCTTTGGAGTATATCCCTAATAAAGAACCTCCATACTTAGTTTTGGTGCTTGATTTGAAACTACTAACGTGTTTATGATACTTTAATTTGCACAAAAAGGTCTTCAATATACGGATAGGCAGAATCCAAAGTACTTTTTTTTTGCATTAAATTAGACCGGCACATTATCATCAAACAAGCAGTAAATGACATTTGCCATATTCTGGCTCGAGTGGTGCTCAAGAAAGCCAGGACAGGAAAGCAAGAGCTGCTGAAACATCACTGCCATGTAGTAAGCACACAGCGACCCAACTATGTATATATACTCCTAGTTGATTTAGCT--TATATATATCCATCCGTAAGGACCCTGCTACAAACCACTAGGCGCGCATGCAGCTCCATGGCTAAAAACACTAAGCAAACGTTCCTAACACCCAGAGCTAAAACTCTTGACGGCTACAAACTACATAGATCATGAGTTCATGACAGCCACGAAGCTGCATTACTTGGCGGCCGTCTTCTTGGACTTGGGCACGGCCTTGTCATGGCCGTGCGCC-GCGGAGCCGAGTTGAGGTCGGGGAGGGACGCGCGGCCGCCGCCGGCGGGCATGTTGCCGTTGCCGTTAGCCTTGGTCGCGGCCGCCGCCGCCGCCGCCGCCTTCGTCTTGGCGAGCCGCTGCTTGAGCTCGGTACAGCTTCGCGTTCAGCCTGTCCATCTTGTGCCCTGCTACCAACAACAACAGGATAACGAAGTTTAGCAGCCATGTGGCGTCACTGTGTGGACCCCTGTTTTGGACTTATGTTGCGAGAGGGGGGAAGAAAGACGACATCGAAGCTGAAACAGTGGACTATTGTGCTCGAGATCCGATAAATATTATCCTGCATACTCAGGGTGTCCCTGCTTTGGCTACATCCTCAGAGGGAGCTGAGAGCTGTGATGAAGATGCTGCTCGCTGCTGGGGAGTTGGAGACGAGAGGCGAGAGAGGTCGAGCGGCGACACCAGAGGAGGCAGGGTGGGCAGCGAGTGTGAAGTGATGCGAGAGGCTGGGCTACTACTACCTAAGCTACGAGACCGGTCGCTGTGGGGCAAGGCAGCGAGAGGCAAAAGAGCACACAGGAGATTGGCACATCTTTTGAATAATCAAGAACAGAGATTGGAGCAGGCACACGGTGAACCAGAGCTGGTGACCGGTACAACGACAGTACAATCTGGTATGTACAGTTTTTAAATACCTGAAAAATTTTAATGCAGGGATACGGGAACGATCTTGTTGCTCTTGTGGCCTTTAAAACACTTCCTGTCTAAAGCCTGAGAAAATTTCATT]

[+] EMBL AK069797             [ACGAAGCAGAGGCCAACCGGAGAGGGCGGAGACGAATCGCCGGCCCCTCCTCTCGCCGGCGGGCGGCCGCCAGGCCGGGAGGTCGGCCGGCGACGCGCCACGGCGACCAACCTGGTTACTACTGGAGATTACTACTTCATATTTGCTCATTGGCATATTATTAGTAGATGGGGACTGTTTACTTCACATTGATTTTGCTTGCTCCATACAGAGGCAGAGAATCATTATGGAGGTTAGTGTATTGATGTTGTGTTTTTGTTTTTGTTTTTGTTTTTTTTTTCTGCTGTGTTACGCTGACCTTGAGGTTTCTAGTATAGGTTTTAGATAGTGACTCTTTTATGGTCCTTAGAAAGTATGGAGAGGTATACATATATCTTACTGTTTAACTATTTTTTAAAGAAGGGCAAAAGTTATGTCATGTACATGTCTAGATTCATTAACATCTATATGAATGTGGGCAATCCTAAAAAATCTTTGTGTTTAATCATTAAGTATGATAACAAATCAAAGTATTTTGAAGTATGAATCTAATTGTACAAGTTTTATACACTAAATGTACTTTTATGTTAACTAATTATTAGTCAAAATCTTTCACATTTGACTTTCTGAAATCAAAATACTACTTATAAAAGCAGGGAGTACGTTTTAAAGGCTGAGGAAAAGGCATAAGGGCATCAGCCCCAGTTCCATTTTTATTAAATTAAGCCAACAATTCTTGTACAGTTTGAGTTCGATCAGCACCATATCTACATTTCATTAGGCCATCTTAAATAGAGATCATGTGATCTTTGTTTTTTTAATCCTTTGGAGTATATCCCTAATAAAGAACCTCCATACTTAGTTTTGGTGCTTGATTTGAAACTACTAACGTGTTTATGATACTTTAATTTGCACAAAAAGGTCTTCAATATACGGATAGGCAGAATCCAAAGTACTAGCATAATGCATTAAATTAGACCGGCACATTATCATCAAACAAGCAGTAAATGACATTTGCCATATTCTGGCTCGAGTGGTGCTCAAGAAAGCCAGGACAGGAAAGCAAGAGCTGCTGAAACATCACTGCCATGTAGTAAGCACACAGCGACCCAACTATGTATATATACTCCTAGTTGATTTAGCTTATATATATATCCATCCGTAAGGACCCTGCTACAAACCACTAGGCGCGCATGCAGCTCCATGGCTAAAAACACTAAGCAAACGTTCCTAACACCCAGAGCTAAAACTCTTGACGGCTACAAACTACATAGATCATGAGTTCATGACAGCCACGAAGCTGCATTACTTGGCGGCCGTCTTCTTGGACTTGGGCACGGCCTTGTCATGGCCGTGCGCCGGCGGAGCCGAGTTGAGGTCGGGGAGGGACGCGCGGCCGCCGCCGGCGGGCATGTTGCCGTTGCCGTTAGCCTTGGTCGCGGCCGCCGCCGCCGCCGCCGCCTTCGTCTTGGCGAGCCGCTGCTTGAGCTCGGTACAGCTTCGCGTTCAGCCTGTCCATCTTGTGCCCTGCTACCAACAACAACAGGATAACGAAGTTTAGCAGCCATGTGGCGTCACTGTGTGGACCCCTGTTTTGGACTTATGTTGCGAGAGGGGGGAAGAAAGACGACATCGAAGCTGAAACAGTGGACTATTGTGCTCGAGATCCGATAAATATTATCCTGCATACTCAGGGTGTCCCTGCTTTGGCTACATCCTCAGAGGGAGCTGAGAGCTGTGATGAAGATGCTGCTCGCTGCTGGGGAGTTGGAGACGAGAGGCGAGAGAGGTCGAGCGGCGACACCAGAGGAGGCAGGGTGGGCAGCGAGTGTGAAGTGATGCGAGAGGCTGGGCTACTACTACCTAAGCTACGAGACCGGTCGCTGTGGGGCAAGGCAGCGAGAGGCAAAAGAGCACACAGGAGATTGGCACATCTTTTGAATAATCAAGAACAGAGATTGGAGCAGGCACACGGTGAACCAGAGCTGGTGACCGGTACAACGACAGTACAATCTGGTATGTACAGTTTTTAAATACCTGAAAAATTTTAATGCAGGGATACGGGAACGATCTTGTTGCTCTTGTGGCCTTTAAAACACTTCCTGTCTAAAGCCTGAGAAAATTTCATT]
[-] EMBL CB967028             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TTTTTTTTGCATTAAATTAGACCGGCACATTATCATCAAACAAGCAGTAAATGACATTTGCCATATTCTGGCTCGAGTGGTGCTCAAGAAAGCCAGGACAGGAAAGCAAGAGCTGCTGAAACATCACTGCCATGTAGTAAGCACACAGCGACCCAACTATGTATATATACTCCTAGTTGATTTAGCT  TATATATATCCATCCGTAAGGACCCTGCTACAAACCACTAGGCGCGCATGCAGCTCCATGGCTAAAAACACTAAGCAAACGTTCCTAACACCCAGAGCTAAAACTCTTGACGGCTACAAACTACATAGATCATGAGTTCATGACAGCCACGAAGCTGCATTACTTGGC GCCGTCTTCTTGGACTTGGGCACGG CNTGTCATGGCCGTGCGCC GCGGAGCCGAGTTGA GTCGGGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CB966876             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TTTTTTTTGCATTAAATTAGACCGGCACATTATCATCAAACAAGCAGTAAATGACATTTGCCATATTCTGGCTCGAGTGGTGCTCAAGAAAGCCAGGACAGGAAAGCAAGAGCTGCTGAAACATCACTGCCATGTAGTAAGCACACAGCGACCCAACTATGTATATATACTCCTAGTTGATTTAGCT  TATATATATCCATCCGTAAGGACCCTGCTACAAACCACTAGGCGCGCATGCAGCTCCATGGCTAAAAACACTAAGCAAACGTTCCTAACACCCAGAGCTAAAACTCTTGACGGCTACAAACTACATAGATCATGAGTTCATGACAGCCACGAAGCTGCATTACTTGGCGGCCGTCTTCTTGGACTTGGGCACGGCCTTGTCATGGCCGTGCGCC GCGGAGCCGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]


>consensus_10295#0 ACGAAGCAGAGGCCAACCGGAGAGGGCGGAGACGAATCGCCGGCCCCTCCTCTCGCCGGC GGGCGGCCGCCAGGCCGGGAGGTCGGCCGGCGACGCGCCACGGCGACCAACCTGGTTACT ACTGGAGATTACTACTTCATATTTGCTCATTGGCATATTATTAGTAGATGGGGACTGTTT ACTTCACATTGATTTTGCTTGCTCCATACAGAGGCAGAGAATCATTATGGAGGTTAGTGT ATTGATGTTGTGTTTTTGTTTTTGTTTTTGTTTTTTTTTTCTGCTGTGTTACGCTGACCT TGAGGTTTCTAGTATAGGTTTTAGATAGTGACTCTTTTATGGTCCTTAGAAAGTATGGAG AGGTATACATATATCTTACTGTTTAACTATTTTTTAAAGAAGGGCAAAAGTTATGTCATG TACATGTCTAGATTCATTAACATCTATATGAATGTGGGCAATCCTAAAAAATCTTTGTGT TTAATCATTAAGTATGATAACAAATCAAAGTATTTTGAAGTATGAATCTAATTGTACAAG TTTTATACACTAAATGTACTTTTATGTTAACTAATTATTAGTCAAAATCTTTCACATTTG ACTTTCTGAAATCAAAATACTACTTATAAAAGCAGGGAGTACGTTTTAAAGGCTGAGGAA AAGGCATAAGGGCATCAGCCCCAGTTCCATTTTTATTAAATTAAGCCAACAATTCTTGTA CAGTTTGAGTTCGATCAGCACCATATCTACATTTCATTAGGCCATCTTAAATAGAGATCA TGTGATCTTTGTTTTTTTAATCCTTTGGAGTATATCCCTAATAAAGAACCTCCATACTTA GTTTTGGTGCTTGATTTGAAACTACTAACGTGTTTATGATACTTTAATTTGCACAAAAAG GTCTTCAATATACGGATAGGCAGAATCCAAAGTACTTTTTTTTTGCATTAAATTAGACCG GCACATTATCATCAAACAAGCAGTAAATGACATTTGCCATATTCTGGCTCGAGTGGTGCT CAAGAAAGCCAGGACAGGAAAGCAAGAGCTGCTGAAACATCACTGCCATGTAGTAAGCAC ACAGCGACCCAACTATGTATATATACTCCTAGTTGATTTAGCTTATATATATCCATCCGT AAGGACCCTGCTACAAACCACTAGGCGCGCATGCAGCTCCATGGCTAAAAACACTAAGCA AACGTTCCTAACACCCAGAGCTAAAACTCTTGACGGCTACAAACTACATAGATCATGAGT TCATGACAGCCACGAAGCTGCATTACTTGGCGGCCGTCTTCTTGGACTTGGGCACGGCCT TGTCATGGCCGTGCGCCGCGGAGCCGAGTTGAGGTCGGGGAGGGACGCGCGGCCGCCGCC GGCGGGCATGTTGCCGTTGCCGTTAGCCTTGGTCGCGGCCGCCGCCGCCGCCGCCGCCTT CGTCTTGGCGAGCCGCTGCTTGAGCTCGGTACAGCTTCGCGTTCAGCCTGTCCATCTTGT GCCCTGCTACCAACAACAACAGGATAACGAAGTTTAGCAGCCATGTGGCGTCACTGTGTG GACCCCTGTTTTGGACTTATGTTGCGAGAGGGGGGAAGAAAGACGACATCGAAGCTGAAA CAGTGGACTATTGTGCTCGAGATCCGATAAATATTATCCTGCATACTCAGGGTGTCCCTG CTTTGGCTACATCCTCAGAGGGAGCTGAGAGCTGTGATGAAGATGCTGCTCGCTGCTGGG GAGTTGGAGACGAGAGGCGAGAGAGGTCGAGCGGCGACACCAGAGGAGGCAGGGTGGGCA GCGAGTGTGAAGTGATGCGAGAGGCTGGGCTACTACTACCTAAGCTACGAGACCGGTCGC TGTGGGGCAAGGCAGCGAGAGGCAAAAGAGCACACAGGAGATTGGCACATCTTTTGAATA ATCAAGAACAGAGATTGGAGCAGGCACACGGTGAACCAGAGCTGGTGACCGGTACAACGA CAGTACAATCTGGTATGTACAGTTTTTAAATACCTGAAAAATTTTAATGCAGGGATACGG GAACGATCTTGTTGCTCTTGTGGCCTTTAAAACACTTCCTGTCTAAAGCCTGAGAAAATT TCATT



consensusID : consensus_10295#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 899
fasta sequence
                              [ACGAAGCAGAGGCCAACCGGAGAGGGCGGAGACGAATCGCCGGCCCCTCCTCTCGCCGGCGGGCGGCCGCCAGGCCGGGAGGTCGGCCGGCGACGCGCCACGGCGACCAACCTGGCCGTGAGACTGGTTACTACTGGAGATTACTACTTCATATTTGCTCATTGGCATATTATTAGTAGATGGGGACTGTTTACTTCACATTGATTTTGCTTGCTCCATACAGAGGCAGAGAATCATTATGGAGAGAGGGGGGAAGAAAGACGACATCGAAGCTGAAACAGTGGACTATTGTGCTCGAGATCCGATAAATATTATCCTGCATACTCAGGGTGTCCCTGCTTTGGCTACATCCTCAGAGGGAGCTGAGAGCTGTGATGAAGATGCTGCTCGCTGCTGGGGAGTTGGAGACGAGAGGCGAGAGAGGTCGAGCGGCGACACCAGAGGAGGCAGGGTGGGCAGCGAGTGTGAAGTGATGCGAGAGGCTGGGCTACTACTACCTAAGCTACGAGACCGGTCGCTGTGGGGCAAGGCAGCGAGAGGCAAAAGGTGAGTAAGGAACAACGAGAAGGAGCACGCAGTCCTGCACCTCCTGCTGGTATGTGCGTGCTTCTCCTCCTGCCTTCCTGTGCGTGCTGTGCTTGCTAGCTCGTTTCTGTGGTGGGGCTTATTTATAGGCGCAGAAAAGCCTCCCTTCCCGTCCGTCCGGCTCGTCGCCGTTCGTTGGTGGATACGAAGCTCTTTCCCCCTCGCTGACGCGCGGGCCACCTAAGAATTGGGCGTTGCACGTACGAGTTAGAGCAAGTTCAATAGTATAGCCCACTACTAGCTCTAATTCATCTATAGCCAATTTAATAGCCAATTCATACAATAGTTGTTTACAATATTTTAATATATGATCT]

[+] EMBL AK100599             [ACGAAGCAGAGGCCAACCGGAGAGGGCGGAGACGAATCGCCGGCCCCTCCTCTCGCCGGCGGGCGGCCGCCAGGCCGGGAGGTCGGCCGGCGACGCGCCACGGCGACCAACCTGGCCGTGAGACTGGTTACTACTGGAGATTACTACTTCATATTTGCTCATTGGCATATTATTAGTAGATGGGGACTGTTTACTTCACATTGATTTTGCTTGCTCCATACAGAGGCAGAGAATCATTATGGAGAGAGGGGGGAAGAAAGACGACATCGAAGCTGAAACAGTGGACTATTGTGCTCGAGATCCGATAAATATTATCCTGCATACTCAGGGTGTCCCTGCTTTGGCTACATCCTCAGAGGGAGCTGAGAGCTGTGATGAAGATGCTGCTCGCTGCTGGGGAGTTGGAGACGAGAGGCGAGAGAGGTCGAGCGGCGACACCAGAGGAGGCAGGGTGGGCAGCGAGTGTGAAGTGATGCGAGAGGCTGGGCTACTACTACCTAAGCTACGAGACCGGTCGCTGTGGGGCAAGGCAGCGAGAGGCAAAAGGTGAGTAAGGAACAACGAGAAGGAGCACGCAGTCCTGCACCTCCTGCTGGTATGTGCGTGCTTCTCCTCCTGCCTTCCTGTGCGTGCTGTGCTTGCTAGCTCGTTTCTGTGGTGGGGCTTATTTATAGGCGCAGAAAAGCCTCCCTTCCCGTCCGTCCGGCTCGTCGCCGTTCGTTGGTGGATACGAAGCTCTTTCCCCCTCGCTGACGCGCGGGCCACCTAAGAATTGGGCGTTGCACGTACGAGTTAGAGCAAGTTCAATAGTATAGCCCACTACTAGCTCTAATTCATCTATAGCCAATTTAATAGCCAATTCATACAATAGTTGTTTACAATATTTTAATATATGATCT]


>consensus_10295#1 ACGAAGCAGAGGCCAACCGGAGAGGGCGGAGACGAATCGCCGGCCCCTCCTCTCGCCGGC GGGCGGCCGCCAGGCCGGGAGGTCGGCCGGCGACGCGCCACGGCGACCAACCTGGCCGTG AGACTGGTTACTACTGGAGATTACTACTTCATATTTGCTCATTGGCATATTATTAGTAGA TGGGGACTGTTTACTTCACATTGATTTTGCTTGCTCCATACAGAGGCAGAGAATCATTAT GGAGAGAGGGGGGAAGAAAGACGACATCGAAGCTGAAACAGTGGACTATTGTGCTCGAGA TCCGATAAATATTATCCTGCATACTCAGGGTGTCCCTGCTTTGGCTACATCCTCAGAGGG AGCTGAGAGCTGTGATGAAGATGCTGCTCGCTGCTGGGGAGTTGGAGACGAGAGGCGAGA GAGGTCGAGCGGCGACACCAGAGGAGGCAGGGTGGGCAGCGAGTGTGAAGTGATGCGAGA GGCTGGGCTACTACTACCTAAGCTACGAGACCGGTCGCTGTGGGGCAAGGCAGCGAGAGG CAAAAGGTGAGTAAGGAACAACGAGAAGGAGCACGCAGTCCTGCACCTCCTGCTGGTATG TGCGTGCTTCTCCTCCTGCCTTCCTGTGCGTGCTGTGCTTGCTAGCTCGTTTCTGTGGTG GGGCTTATTTATAGGCGCAGAAAAGCCTCCCTTCCCGTCCGTCCGGCTCGTCGCCGTTCG TTGGTGGATACGAAGCTCTTTCCCCCTCGCTGACGCGCGGGCCACCTAAGAATTGGGCGT TGCACGTACGAGTTAGAGCAAGTTCAATAGTATAGCCCACTACTAGCTCTAATTCATCTA TAGCCAATTTAATAGCCAATTCATACAATAGTTGTTTACAATATTTTAATATATGATCT



consensusID : consensus_10295#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 469
fasta sequence
                              [GGGCATGTTGCCGTTGCCGTTAGCCTTGGTCGCGGCCGCCGCCGCCGCCGCCG-CCTTCGTCTTGGCGAGCCGCTGCTTGAGCTCGGTGAGCAAGGCCTGGTTCTCCTGGTTCAGCAGCAGCGCCTTCTTGCGCAGCCGCTCGTTCTCCTTCATGATGTAGCAGTTCTGCAGGTACAGCTTCGCGTTCAGCCTGTCCATCTTGTGCCCTCCTCTCTGCAGGGAGCTGAGAGCTGTGATGCACAGATGCTGCTCGCTGCTGGGGCAGTTGGCAGACGCAGCAGGCGCAGCAGCAGGTCGCAGCGGCGACACCAGAGGAGGCAGGGTGGGCAGCGAGTGTGAAGTGATGCGAGCAGGCTGGGCTACTACTCACCTAAGCTACGCAGACCGGTCGCTGTGGGGCAAGGCAGCGCAGAGGCAAAAGGTGCATAAGGAACAACGAGAAGGAGCACGCAGTCCTGCACCCTCCTGC]

[+] EMBL CB965823             [GGGCATGTTGCCGTTGCCGTTAGCCTTGGTCGCGGCCGCCGCCGCCGCCGCCG CCTTCGTCTTGGCGAGCCGCTGCTTGAGCTCGGTGAGCAAGGCCTGGTTCTCCTGGTTCAGCAGCAGCGCCTTCTTGCGCAGCCGCTCGTTCTCCTTCATGATGTAGCAGTTCTGCAGGTACAGCTTCGCGTTCAGCCTGTCCATCTTGTGCCCTCCTCTCTGCAGGGAGCTGAGAGCTGTGATGCACAGATGCTGCTCGCTGCTGGGGCAGTTGGCAGACGCAGCAGGCGCAGCAGCAGGTCGCAGCGGCGACACCAGAGGAGGCAGGGTGGGCAGCGAGTGTGAAGTGATGCGAGCAGGCTGGGCTACTACTCACCTAAGCTACGCAGACCGGTCGCTGTGGGGCAAGGCAGCGCAGAGGCAAAAGGTGCATAAGGAACAACGAGAAGGAGCACGCAGTCCTGCACCCTCCTGC]
[-] EMBL AU095341             [                                            gCGCCGNCGACCTTCGTCTTGGCGAGCCGCTGCTTGAGCTCGGTGAGCAAGGCCTGGTTCTCCTGGTTCAGCANCAGCGCCTTCTTGCGCA NCGCTCGTTCTCCTTCATGATGTAGCAGTTCTGCAGGTACAGCTTCGCGTTCAGCCTGTCCATCTTGTGCCCNCCTCTCTGCAGGGAGCTGAGAGCTGTGATG A AGATGCTGCTCGCTGCT                                                                                                                                                                                                                   ]


>consensus_10295#2 GGGCATGTTGCCGTTGCCGTTAGCCTTGGTCGCGGCCGCCGCCGCCGCCGCCGCCTTCGT CTTGGCGAGCCGCTGCTTGAGCTCGGTGAGCAAGGCCTGGTTCTCCTGGTTCAGCAGCAG CGCCTTCTTGCGCAGCCGCTCGTTCTCCTTCATGATGTAGCAGTTCTGCAGGTACAGCTT CGCGTTCAGCCTGTCCATCTTGTGCCCTCCTCTCTGCAGGGAGCTGAGAGCTGTGATGCA CAGATGCTGCTCGCTGCTGGGGCAGTTGGCAGACGCAGCAGGCGCAGCAGCAGGTCGCAG CGGCGACACCAGAGGAGGCAGGGTGGGCAGCGAGTGTGAAGTGATGCGAGCAGGCTGGGC TACTACTCACCTAAGCTACGCAGACCGGTCGCTGTGGGGCAAGGCAGCGCAGAGGCAAAA GGTGCATAAGGAACAACGAGAAGGAGCACGCAGTCCTGCACCCTCCTGC



consensusID : consensus_10295#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 309
fasta sequence
                              [TGTAGCAGTTCTGCAGGTACANTTNGCGTTCAGCCTGTCCATCTTGTGCCCTCCTCTCTGCAGGGAGCTGAGAGCTGTGATGAAGATGCTGCTCGCTNCTGGGGAGTTGGAGACGAGAGNCGAGAGAGGTCGAGCGGCGACACCAGAGGAGGCAGGGTGGGCAGCGAGTGTGAAGTGATGCGAGAGGCTGGGCTACTACTACCTAAGCTACGAGACCGGTCGCTGTGGGGCAAGGCAGCGAGAGGCAAAAGGTGAGTAAGGAACAACGAGAAGGAGCACGCAGTCCTGCACCTCCTGCTGGTATGTGCG]

[-] EMBL AU065307             [TGTAGCAGTTCTGCAGGTACANTTNGCGTTCAGCCTGTCCATCTTGTGCCCTCCTCTCTGCAGGGAGCTGAGAGCTGTGATGAAGATGCTGCTCGCTNCTGGGGAGTTGGAGACGAGAGNCGAGAGAGGTCGAGCGGCGACACCAGAGGAGGCAGGGTGGGCAGCGAGTGTGAAGTGATGCGAGAGGCTGGGCTACTACTACCTAAGCTACGAGACCGGTCGCTGTGGGGCAAGGCAGCGAGAGGCAAAAGGTGAGTAAGGAACAACGAGAAGGAGCACGCAGTCCTGCACCTCCTGCTGGTATGTGCG]


>consensus_10295#3 TGTAGCAGTTCTGCAGGTACANTTNGCGTTCAGCCTGTCCATCTTGTGCCCTCCTCTCTG CAGGGAGCTGAGAGCTGTGATGAAGATGCTGCTCGCTNCTGGGGAGTTGGAGACGAGAGN CGAGAGAGGTCGAGCGGCGACACCAGAGGAGGCAGGGTGGGCAGCGAGTGTGAAGTGATG CGAGAGGCTGGGCTACTACTACCTAAGCTACGAGACCGGTCGCTGTGGGGCAAGGCAGCG AGAGGCAAAAGGTGAGTAAGGAACAACGAGAAGGAGCACGCAGTCCTGCACCTCCTGCTG GTATGTGCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10295#1      ------------------------------------------------------------
consensus_10295#3      ------------------------------------------------------------
consensus_10295#0      ACGAAGCAGAGGCCAACCGGAGAGGGCGGAGACGAATCGCCGGCCCCTCCTCTCGCCGGC 60
consensus_10295#2      ------------------------------------------------------------
                                                                                   

consensus_10295#1      ------------------------------------------------------------
consensus_10295#3      ------------------------------------------------------------
consensus_10295#0      GGGCGGCCGCCAGGCCGGGAGGTCGGCCGGCGACGCGCCACGGCGACCAACCTGGTTACT 120
consensus_10295#2      ------------------------------------------------------------
                                                                                   

consensus_10295#1      ------------------------------------------------------------
consensus_10295#3      ------------------------------------------------------------
consensus_10295#0      ACTGGAGATTACTACTTCATATTTGCTCATTGGCATATTATTAGTAGATGGGGACTGTTT 180
consensus_10295#2      ------------------------------------------------------------
                                                                                   

consensus_10295#1      ------------------------------------------------------------
consensus_10295#3      ------------------------------------------------------------
consensus_10295#0      ACTTCACATTGATTTTGCTTGCTCCATACAGAGGCAGAGAATCATTATGGAGGTTAGTGT 240
consensus_10295#2      ------------------------------------------------------------
                                                                                   

consensus_10295#1      ------------------------------------------------------------
consensus_10295#3      ------------------------------------------------------------
consensus_10295#0      ATTGATGTTGTGTTTTTGTTTTTGTTTTTGTTTTTTTTTTCTGCTGTGTTACGCTGACCT 300
consensus_10295#2      ------------------------------------------------------------
                                                                                   

consensus_10295#1      ------------------------------------------------------------
consensus_10295#3      ------------------------------------------------------------
consensus_10295#0      TGAGGTTTCTAGTATAGGTTTTAGATAGTGACTCTTTTATGGTCCTTAGAAAGTATGGAG 360
consensus_10295#2      ------------------------------------------------------------
                                                                                   

consensus_10295#1      ------------------------------------------------------------
consensus_10295#3      ------------------------------------------------------------
consensus_10295#0      AGGTATACATATATCTTACTGTTTAACTATTTTTTAAAGAAGGGCAAAAGTTATGTCATG 420
consensus_10295#2      ------------------------------------------------------------
                                                                                   

consensus_10295#1      ------------------------------------------------------------
consensus_10295#3      ------------------------------------------------------------
consensus_10295#0      TACATGTCTAGATTCATTAACATCTATATGAATGTGGGCAATCCTAAAAAATCTTTGTGT 480
consensus_10295#2      ------------------------------------------------------------
                                                                                   

consensus_10295#1      ------------------------------------------------------------
consensus_10295#3      ------------------------------------------------------------
consensus_10295#0      TTAATCATTAAGTATGATAACAAATCAAAGTATTTTGAAGTATGAATCTAATTGTACAAG 540
consensus_10295#2      ------------------------------------------------------------
                                                                                   

consensus_10295#1      ------------------------------------------------------------
consensus_10295#3      ------------------------------------------------------------
consensus_10295#0      TTTTATACACTAAATGTACTTTTATGTTAACTAATTATTAGTCAAAATCTTTCACATTTG 600
consensus_10295#2      ------------------------------------------------------------
                                                                                   

consensus_10295#1      ------------------------------------------------------------
consensus_10295#3      ------------------------------------------------------------
consensus_10295#0      ACTTTCTGAAATCAAAATACTACTTATAAAAGCAGGGAGTACGTTTTAAAGGCTGAGGAA 660
consensus_10295#2      ------------------------------------------------------------
                                                                                   

consensus_10295#1      ------------------------------------------------------------
consensus_10295#3      ------------------------------------------------------------
consensus_10295#0      AAGGCATAAGGGCATCAGCCCCAGTTCCATTTTTATTAAATTAAGCCAACAATTCTTGTA 720
consensus_10295#2      ------------------------------------------------------------
                                                                                   

consensus_10295#1      ------------------------------------------------------------
consensus_10295#3      ------------------------------------------------------------
consensus_10295#0      CAGTTTGAGTTCGATCAGCACCATATCTACATTTCATTAGGCCATCTTAAATAGAGATCA 780
consensus_10295#2      ------------------------------------------------------------
                                                                                   

consensus_10295#1      ------------------------------------------------------------
consensus_10295#3      ------------------------------------------------------------
consensus_10295#0      TGTGATCTTTGTTTTTTTAATCCTTTGGAGTATATCCCTAATAAAGAACCTCCATACTTA 840
consensus_10295#2      ------------------------------------------------------------
                                                                                   

consensus_10295#1      ------------------------------------------------------------
consensus_10295#3      ------------------------------------------------------------
consensus_10295#0      GTTTTGGTGCTTGATTTGAAACTACTAACGTGTTTATGATACTTTAATTTGCACAAAAAG 900
consensus_10295#2      ------------------------------------------------------------
                                                                                   

consensus_10295#1      ------------------------------------------------------------
consensus_10295#3      ------------------------------------------------------------
consensus_10295#0      GTCTTCAATATACGGATAGGCAGAATCCAAAGTACTTTTTTTTTGCATTAAATTAGACCG 960
consensus_10295#2      ------------------------------------------------------------
                                                                                   

consensus_10295#1      ------------------------------------------------------------
consensus_10295#3      ------------------------------------------------------------
consensus_10295#0      GCACATTATCATCAAACAAGCAGTAAATGACATTTGCCATATTCTGGCTCGAGTGGTGCT 1020
consensus_10295#2      ------------------------------------------------------------
                                                                                   

consensus_10295#1      ------------------------------------------------------------
consensus_10295#3      ------------------------------------------------------------
consensus_10295#0      CAAGAAAGCCAGGACAGGAAAGCAAGAGCTGCTGAAACATCACTGCCATGTAGTAAGCAC 1080
consensus_10295#2      ------------------------------------------------------------
                                                                                   

consensus_10295#1      ------------------------------------------------------------
consensus_10295#3      ------------------------------------------------------------
consensus_10295#0      ACAGCGACCCAACTATGTATATATACTCCTAGTTGATTTAGCTTATATATATCCATCCGT 1140
consensus_10295#2      ------------------------------------------------------------
                                                                                   

consensus_10295#1      ------------------------------------------------------------
consensus_10295#3      ------------------------------------------------------------
consensus_10295#0      AAGGACCCTGCTACAAACCACTAGGCGCGCATGCAGCTCCATGGCTAAAAACACTAAGCA 1200
consensus_10295#2      ------------------------------------------------------------
                                                                                   

consensus_10295#1      ------------------------------------------------------------
consensus_10295#3      ------------------------------------------------------------
consensus_10295#0      AACGTTCCTAACACCCAGAGCTAAAACTCTTGACGGCTACAAACTACATAGATCATGAGT 1260
consensus_10295#2      ------------------------------------------------------------
                                                                                   

consensus_10295#1      ------------------------------------------------------------
consensus_10295#3      ------------------------------------------------------------
consensus_10295#0      TCATGACAGCCACGAAGCTGCATTACTTGGCGGCCGTCTTCTTGGACTTGGGCACGGCCT 1320
consensus_10295#2      ------------------------------------------------------------
                                                                                   

consensus_10295#1      ------------ACGAAGCAGAGGCCAACCGGAGA-GGGCGGAGACGAATCGCCGGCCCC 47
consensus_10295#3      ------------------------------------------------------------
consensus_10295#0      TGTCATGGCCGTGCGCCGCGGAGCCGAGTTGAGGTCGGGGAGGGACGCGCGGCCGCCGCC 1380
consensus_10295#2      ------------------------------------------------------------
                                                                                   

consensus_10295#1      TCCTCTCGCCGGCGGGCGGCCGCCAGGCCGGGAGGTCGGCCGGCGACGC-GCCACGGCGA 106
consensus_10295#3      ------------------------------------------------------------
consensus_10295#0      GGCGGGCATGTTGCCGTTGCCGTTAGCCTTGGTCG-CGGCCGCCGCCGCCGCCGCCGCCT 1439
consensus_10295#2      ---GGGCATGTTGCCGTTGCCGTTAGCCTTGGTCG-CGGCCGCCGCCGCCGCCGCCGCCT 56
                                                                                   

consensus_10295#1      CCAACCTGGCCGTGAGACTGGTTACTACTGGAG-ATTACTACTTCATATTTGCTCATT-- 163
consensus_10295#3      ------------------------------------------------------------
consensus_10295#0      TCGTCTTGGC-GAGCCGCTGCTTGAGCTCGGTACAGCTTCGCGTTCAGCCTGTCCATCTT 1498
consensus_10295#2      TCGTCTTGGC-GAGCCGCTGCTTGAGCTCGGT--------GAGCAAGGCCTGGTTCTCCT 107
                                                                                   

consensus_10295#1      --GGCATATTATTAGTAG-ATGGGGACTGTTTACTTCA-CATTGATTTTGCTTGCTCCAT 219
consensus_10295#3      ------------------------------------------------------------
consensus_10295#0      GTGCCCTGCTACCAACAACAACAGGATAACGAAGTTTAGCAGCCATGTGGCGT-CACTGT 1557
consensus_10295#2      G--------------------------------GTTCAGCAGCAGCG---CCT-TCTTGC 131
                                                                                   

consensus_10295#1      ACAGAGGCAGAGAATCA--TTATG--GAGAGAGGGGGGAAGAAAGACGACATCGAAGCTG 275
consensus_10295#3      ------------------------------------------------------------
consensus_10295#0      GTGGACCCCTGTTTTGGACTTATGTTGCGAGAGGGGGGAAGAAAGACGACATCGAAGCTG 1617
consensus_10295#2      GCAGCCGCTCGTTCT----------------------------------CCTTCATGATG 157
                                                                                   

consensus_10295#1      AAACAGTGGACTATTGTGCTCGAGATCCGATAAATATTATCCTGCATACTCAGGGTGTCC 335
consensus_10295#3      ----------------TGTAGCAGTTCTG-CAGGTAC-ANTTNGCGT--TCAGCCTGTCC 40
consensus_10295#0      AAACAGTGGACTATTGTGCTCGAGATCCGATAAATATTATCCTGCATACTCAGGGTGTCC 1677
consensus_10295#2      TAGCAGT-------------------TCTGCAGGTACAGCTTCGCGT--TCAGCCTGTCC 196
                                                      *  **       ** *  ****  *****

consensus_10295#1      CTGCTTTGGCTACATCCTCAGAGGGAGCTGAGAGCTGTGATGAA--GATGCTGCTCGCTG 393
consensus_10295#3      ATCTTGTGCCCTCCTCTCTGCAGGGAGCTGAGAGCTGTGATGAA--GATGCTGCTCGCTN 98
consensus_10295#0      CTGCTTTGGCTACATCCTCAGAGGGAGCTGAGAGCTGTGATGAA--GATGCTGCTCGCTG 1735
consensus_10295#2      ATCTTGTGCCCTCCTCTCTGCAGGGAGCTGAGAGCTGTGATGCACAGATGCTGCTCGCTG 256
                        *  * ** *  * **     ********************* *  ************* 

consensus_10295#1      CTGGGG-AGTTGG-AGACG----AGAGGCGAGAG-AGGTCG-AGCGGCGACACCAGAGGA 445
consensus_10295#3      CTGGGG-AGTTGG-AGACG----AGAGNCGAGAG-AGGTCG-AGCGGCGACACCAGAGGA 150
consensus_10295#0      CTGGGG-AGTTGG-AGACG----AGAGGCGAGAG-AGGTCG-AGCGGCGACACCAGAGGA 1787
consensus_10295#2      CTGGGGCAGTTGGCAGACGCAGCAGGCGCAGCAGCAGGTCGCAGCGGCGACACCAGAGGA 316
                       ****** ****** *****    **   *   ** ****** ******************

consensus_10295#1      GGCAGGGTGGGCAGCGAGTGTGAAGTGATGCGAG-AGGCTGGGCTACTACT-ACCTAAGC 503
consensus_10295#3      GGCAGGGTGGGCAGCGAGTGTGAAGTGATGCGAG-AGGCTGGGCTACTACT-ACCTAAGC 208
consensus_10295#0      GGCAGGGTGGGCAGCGAGTGTGAAGTGATGCGAG-AGGCTGGGCTACTACT-ACCTAAGC 1845
consensus_10295#2      GGCAGGGTGGGCAGCGAGTGTGAAGTGATGCGAGCAGGCTGGGCTACTACTCACCTAAGC 376
                       ********************************** **************** ********

consensus_10295#1      TACG-AGACCGGTCGCTGTGGGGCAAGGCAGCG-AGAGGCAAAAG-GTGAGTAAGGAACA 560
consensus_10295#3      TACG-AGACCGGTCGCTGTGGGGCAAGGCAGCG-AGAGGCAAAAG-GTGAGTAAGGAACA 265
consensus_10295#0      TACG-AGACCGGTCGCTGTGGGGCAAGGCAGCG-AGAGGCAAAAGAGCACACAGGAGATT 1903
consensus_10295#2      TACGCAGACCGGTCGCTGTGGGGCAAGGCAGCGCAGAGGCAAAAG-GTGCATAAGGAAC- 434
                       **** **************************** *********** *     * *  *  

consensus_10295#1      ACGAGAAGGAGCACGCAGTCCTGCACCTCCTGCTGGTATGTGCGTGCTTCTCCTCCTGCC 620
consensus_10295#3      ACGAGAAGGAGCACGCAGTCCTGCACCTCCTGCTGGTATGTGCG---------------- 309
consensus_10295#0      GGCACATCTTTTGAATAATCAAG-AACAGAGATTGGAGCAGGCACACGGTGAACCAGAGC 1962
consensus_10295#2      -------------AACGAGAAGG-AGCACGCAGTCCTGCACCCTCCTGC----------- 469
                                             * * *      *        *                 

consensus_10295#1      TTCCTGTGCGTGCTGTGCTTGCTAGCTCGTTTCTGTGGTGGGGCTTATTTATAGGCGCAG 680
consensus_10295#3      ------------------------------------------------------------
consensus_10295#0      TGGTGACCGGTACAACGACAGTACAATC-------TGGTATGTACAGTTTTTAAATACCT 2015
consensus_10295#2      ------------------------------------------------------------
                                                                                   

consensus_10295#1      AAAAGCCTCCCTTCCCGTCCGTCCGGCTCGTCGCCGTT-CGTTGGTGGA-TACGAAGCTC 738
consensus_10295#3      ------------------------------------------------------------
consensus_10295#0      GAAAAATTTTAATGCAGGGATACGGGAACGATCTTGTTGCTCTTGTGGCCTTTAAAACAC 2075
consensus_10295#2      ------------------------------------------------------------
                                                                                   

consensus_10295#1      TTTCCCCCTCGCTGACGCGCGGGCCACCTAAGAATTGGGCGTTGCACGTACGAGTTAGAG 798
consensus_10295#3      ------------------------------------------------------------
consensus_10295#0      TTCCTGTCTAAAGCCTGAGAAAATTTCATT------------------------------ 2105
consensus_10295#2      ------------------------------------------------------------
                                                                                   

consensus_10295#1      CAAGTTCAATAGTATAGCCCACTACTAGCTCTAATTCATCTATAGCCAATTTAATAGCCA 858
consensus_10295#3      ------------------------------------------------------------
consensus_10295#0      ------------------------------------------------------------
consensus_10295#2      ------------------------------------------------------------
                                                                                   

consensus_10295#1      ATTCATACAATAGTTGTTTACAATATTTTAATATATGATCT 899
consensus_10295#3      -----------------------------------------
consensus_10295#0      -----------------------------------------
consensus_10295#2      -----------------------------------------
                                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)