These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10298#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1721 fasta sequence [TTTTTTTTTTTTTTTTTCAAGCATAACAACTCCTAACTATATATCTCTGGGAGTCAACATGAAGCACTGTGTAGTTTCTACTATGTTAGTTGCTTTTGTAACCGTTTTATGTACAACAACAGAGCATCATACATTCACCCTAGCGTTCAACAAGGTCTACAGAGGTTATTACTTCTAGTTGCTACTCTTTGCATATGCACAGCAACACAAGCTTGTTTACATTGC-ATTGTAAAAAGACAATGAAAAGAATGATATTGCAAGCACTG-CCATGTATGCGCATTGGGGCAGTCGGGCAGCATGGACAGACAGACCTCAAACCTACCAAATTCCTAGGAGAACCGAAAGCATGCATCTTCAATCTTTCATCAGGTAGGATATTCCGCGAGAACCAACGTGTGCCACCAACCGCATGAAACGTTTAGCGGGTTGTACGCTTCCACGGGCACTTGGCATGGTACGTTTCTGTCTGTTGAGTCGCCCAAACCAAGCTGACCGTACTTGTTCCAACCCCAGCAGAAGACATCTCCTTTATCTGTTATGACTGCACTGTGTCGGGCTCCACACGAAACACCTCTT-GCATGATTATTTTCCAATTTCGAGGCTTCTACCAACTTTGGAACAATCTCAGCTTGATCTGATCCAGTTCCCAGCTGCCCAAACTGGTTACCTCCAAAGGAATATACATCACCATCAGCAGATGTACATACAGTATGCCATAGCCCAGCTGCTACACGTTGTATCTTCACTCCCATAATAGCCGAAACACACGTTGGGCTTAAAATATCATCCGTGTTCCCTTGTCCACACTGTCCATATAATCCCCATCCAAATGTAAGAAGTGTTCCTGAATCTGTCACCACAGCACTATGACGGCCTCCACAGGCAATTGCTTTCACGCAAGTTGCTGCTCTATCATTTGTTCCTTCCAAAGTTCTGCTACCCATCACAATTCCTGTACGGTCCTTGCTGTAGAACGCCGATTGAACACAAGGTATGGGATGTGGGGAGGAAACTGTCCGGATCCTAGAGCCTAAACCTAGTTGTCCTTCCCCACCATAGCCCCAACCCCAGACCTGACCAAAATCTGAAGCTGACAGCACTAATGTATGACGGCCACCTGCAGCTACTTCCACTATCTTCACTCCTGTATTAAATGTCACAACACAAGGTGGTGCTGAAAGATTTTCATCACTAGATGATTCACTTTCAGCCCCGTGTTTCGATGAAGATAACCTCCGTCGCTTTGTGCTATCCTCAGAACTTCGGCTTTCAGCAGGACCAGATGCTGCCTTGGTGCTTGTCCTAGACACCTTTGACCTGGGGCTCACTGTAATCGAGTTTCCTTGGTCAGTGGCAACCCCACTTTGCCTTTTATCACAATCCATAGCCCCAGTTGCAGAATGGTCTGCAATGACCCTTCCAGTTGGAACGCATTCTTTCCAACCCCATGTGTAGACATCACCTTTACCTGTTATTGCAACACAATGTGCCCATCCAGCGTCAGCCCTTACAATTGCAATATCACTAGGAAGAGGAAATGCCTCCGGAGTTTCCTCATGCTTCCCAGCAGTCACGTAACTTTGTCCCATATCATCGGTAGAGCCCCAAGTGAAGAGTTTTCCTTGCTCGGAGACGGCCATCGCGAAGCCGCACCCGCCGCCGGCCACATCCCTCCACGCATCACCGGCCGCCGCGGCCGCGTCCGGCATCCTCAGGGGCAC] [-] EMBL AU100832 [TTTTTTTTTTTTTTTTTCAAGCATAACAACTCCTAACTATATATCTCTGGGAGTCAACATGAAGCACTGTGTAGTTTCTACTATGTTAGTTGCTTTTGTAACCGTTTTATGTACAACAACAGAGCATCATACATTCACCCTAGCGTTCAACAAGGTCTACAGAGGTTATTACTTCTAGTTGCTACTCTTTGCATATGCACAGCAACACAAGCTTGTTTACATTGC ATTGTAAAAAGACAATGAAAAGAATGATATTGCAAGCACTG CCATGTATGCGCATTGGGGCAGTCGGGCAGCATGGACAGACAGACCTCAAACCTACCAAATTCCTAGGAGAACCGAAAGCATGCATCTTCAATCTTTCATCAGGTAGGATATTCCGCGAGAACCAACGTGTGCCACCAACCGCATGAAACGTTTAGCGGGTTGTACGCTTCCACGGGCACTTGGCATGGTACGTTTCTGTCTGTTGAGTCGCCCAAACCAAGCTGACCGTACTTGTTCCAACCCCAGCAGAAGACATCTCCTTTATCTGTTATGACTGCACTGTGTNGGGCTCCACACGAAACACCTCTTGGCATGATTATTTTCCAATTTCGAGGCTTCTACCAACTTTGGAAC ] [+] EMBL CB662035 [ tctttttttTAGTTTCTACTATGTTAGTTGCTTTTGTAACCGTTTTATGTACAACAACAGAGCATCATACATTCACCCTAGCGTTCAACAAGGTCTACAGAGGTTATTACTTCTAGTTGCTACTCTTTGCATATGCACAGCAACACAAGCTTGTTTACATTGC ATTGTAAAAAGACAATGAAAAGAATGATATTGCAAGCACTG CCATGTATGCGCATTGGGGCAGTCGGGCAGCATGGACAGACAGACCTCAAACCTACCAAATTCCTAGGAGAACCGAAAGCATGCATCTTCAATCTTTCATCAGGTAGGATATTCCGCGAGAACCAACGTGTGCCACCAACCGCATGAAACGTTTAGCGGGTTGTACGCTTCCACGGGCACTTGGCATGGTACGTTTCTGTCTGTTGAGTCGCCCAAACCAAGCTGACCGTACTTGTTCCAACCCCAGCAGAAGACATCTCCTTTATCTGTTATGACTGCACTGTGTCGGGCTCCACACGAAACACCTCTT GCATGATTATTTTCCAATTTCGAGGCTTCTACCAACTTTGGAACAATCTCAGCTTGATCTGATCCAGTTCCCAGCTGCCCAAACTGGTTACCTCCAAAGGAATATACATCACCATCAGCAGATGTACATACAGTATGCCATAGCCCAGCTGCTACACGTTGTATCTTCACTCCCATAATAGCCGAAACACACGTTGGGCTTAAAATATCATCCGTGTTCCCTTGTCCACACTGTCCATATAATCCCCATCCAAATGTAAGAAGTGTTCCTGAATCTGTCACCACA ] [+] EMBL CB676590 [ TATGTTAGTTGCTTTTGTAACCGTTTTATGTACAACAACAGAACATCATACATTCCCCCTAACGTTCAACAAGGGCTACAGAGGGTATTACTTCTAATTGCTACTCTTTGCATATGCACAGCAACACAAGCTTGTTTACATTGC ATTGTAAAAAAACAATGAAAAAAATGATATTGCAAGCACTG CCATGTATGCCCATTGGGGCAGTCGGGCAGCATGGACAAACAAACCTCAAACCTACCAAATTCCTAGGAAAACCGAAAGCATGCATCTTCAATCTTTCATCAGGGAGGATATTCCCCGAAAACCAACGTGGGCCACCAACCGCATGAAACGTTTAGCGGGTTGTACCCTTCCACGGGCACTTGGCATGGGACCTTTCTGTCTGTTGAGTCCCCCAAACCAAGCTGACCGTACTTGTTCCAACCCCAGCAAAAAACATCCCCTTTATCTGTTATAACTGCACTGGGGCGGGCTCCACACAAAACACCTCTT GCATGATTATTTTCCAATTTCGAGGCTTCTACCAACTTTGGAACAATCTCAGCTTGATCTGATCCAGTTCCCAGCTGCCCAAACTGGTTACCTCCAAAGGAATATACATCCCCCTCAGCAAATGTACAT ] [-] EMBL C27538 [ CACAA CTTGTTTACATTGCAATTGTAAAAAGACAATGAAAAGAATGATATTGCAAGCACTGCCCATGTATGCGCATTGGGGCAGTCGGGCAGCATGGACAGACAGACCTCAAACCTACCAAATTCCTAGGAGAACCGAAAGCATGCATCTTCAATCTTTCATCAGGTAGGATATTCCGCGAGAACCAACGTGTGCCACCAACCGCATGAAACGTTTAGCGGGTTGTACGCTTCCACGGGCACTTGGCATGGTACGTTTCTGTCTGTTGAGTCGCCCAAACCAAGCTGACCGTACTTGTTCCAACCCCAGCAGAAGACATCTCCTTTATCTGTTATGACTGCACTGTGTCGGGCTCCACACGAAACACCTCTT GCATGATTATTTTCCAATTTCGAGGCTTCTACCAACTTTGGA ] [-] EMBL CB662034 [ TATGACTGCACTGTGTCGGGCTCCACACGAAACACCTCTT GCATGATTATTTTCCAATTTCGAGGCTTCTACCAACTTTGGAACAATCTCAGCTTGATCTGATCCAGTTCCCAGCTGCCCAAACTGGTTACCTCCAAAGGAATATACATCACCATCAGCAGATGTACATACAGTATGCCATAGCCCAGCTGCTACACGTTGTATCTTCACTCCCATAATAGCCGAAACACACGTTGGGCTTAAAATATCATCCGTGTTCCCTTGTCCACACTGTCCATATAATCCCCATCCAAATGTAAGAAGTGTTCCTGAATCTGTCACCACAGCACTATGACGGCCTCCACAGGCAATTGCTTTCACGCAAGTTGCTGCTCTATCATTTGTTCCTTCCAAAGTTCTGCTACCCATCACAATTCCTGTACGGTCCTTGCTGTAGAACGCCGATTGAACACAAGGTATGGGATGTGGGGAGGAAACTGTCCGGATCCTAGAGCCTAAACCTAGTTGTCCTTCCCCACCATAGCCCCAACCCCAGACCTGACCAAAATCTGAAGCTGACAGCACTAATGTATGACGGCCACCTGCAGCTACTTCCACTATCTTCACTCCTGTATTAAATGTCACAACACAAGGTGGTGCTGAAAGATTTTCATCACTAGATGATTCACTTTCAGCCCCGTGTTTCGATGAAGATAACCTCCGTCGCTTTGTGCTATCCTCAGAACTTCGGCTTTCAGCAGGACCAGATGCTGCCTTGGTGCTTGTCCTAGACACCTT ] [-] EMBL CB676589 [ ACGCCGATTGAACACAAGGTATGGGATGTGGGGAGGAAACTGTCCGGATCCTAGAGCCTAAACCTAGTTGTCCTTCCCCACCATAGCCCCAACCCCAGACCTGACCAAAAT CTGACAGCACTAATGTATGACGGCCACCTGCAGCTACTTCCACTATCTTCACTCCTGTATTAAATGTCACAACACAAGGTGGTGCTGAAAGATTTTCATCACTAGATGATTCACTTTCAGCCCCGTGTTTCGATGAAGATAACCTCCGTCGCTTTGTGCTATCCTCAGAACTTCGGCTTTCAGCAGGACCAGATGCTGCCTTGGTGCTTGTCCTAGACACCTTTGACCTGGGGCTCACTGTAATCGAGTTTCCTTGGTCAGTGGCAACCCCACTTTGCCTTTTATCACAATCCATAGCCCCAGTTGCAGAATGGTCTGCAATGACCCTTCCAGTTGGAACGCATTCTTTCCAACCCCATGTGTAGACATCACCTTTACCTGTTATTGCAACACAATGTGCCCATCCAGCGTCAGCCCTTACAATTGCAATATCACTAGGAAGAGGAAATGCCTCCGGAGTTTCCTCATGCTTCCCAGCAGTCACGTAACTTTGTCCCATATCATCGGTAGAGCCCCAAGTGAAGAGTTTTCCTTGCTCGGAGACGGCCATCGCGAAGCCGCACCCGCCGCCGGCCACATCCCTCCACGCATCACCGGCCGCCGCGGCCGCGTCCGGCATCCTCAGGGGCAC] consensusID : consensus_10298#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [GTCAGGCATAACATTCCTAACTATATATCTCCGGGAGTAAACATGAAGCACTTTGTAGTTTCTACTATGTTAGTTGCTTTTGTAACCGCTACAACAACAGAGCATCACACATTCACCTAGCTTTCAACAAGGTCTACAGAGGTTATTACTTCTAGTTGCTACTCTTTGCGTATGCACAGCAACACTACTACACAACCTTGTTTACATTGCATACTAAAAAGACAATGAAAAGAATGATATTGCAAGCACAGCCATGTATGTGCATTGGTGCAGTCGTGCAGCATGGGCAGACCTCAAACCTACCAGATTCCATGCATCTTCAATCTCCATCAGGTAGGATATTCCACGAGAACCAACGTGTGCCACCAACCGCATGAAACGTTTAGCAGGTTGTACGCTTCCACGGGCACTTGGCATGGTACGTTTCTGTCTGTTGAGTCGCCCAAACCAAGCTGACCGTACTTGTTTCAATCCCAGCAGAAGACATCTCCTTTATCTGTTATGACTGCACTGTGTCGGGCTCCACACGAAACACCTTTTGCATGCTTATTTTCCAATTCCGAGGCTTCTACCAACTTTGGAACAATCTCAGCTTGATCTGATCCAGTTCCCAGCTGCCCAAACT] [-] EMBL CA752624 [GTCAGGCATAACATTCCTAACTATATATCTCCGGGAGTAAACATGAAGCACTTTGTAGTTTCTACTATGTTAGTTGCTTTTGTAACCGCTACAACAACAGAGCATCACACATTCACCTAGCTTTCAACAAGGTCTACAGAGGTTATTACTTCTAGTTGCTACTCTTTGCGTATGCACAGCAACACTACTACACAACCTTGTTTACATTGCATACTAAAAAGACAATGAAAAGAATGATATTGCAAGCACAGCCATGTATGTGCATTGGTGCAGTCGTGCAGCATGGGCAGACCTCAAACCTACCAGATTCCATGCATCTTCAATCTCCATCAGGTAGGATATTCCACGAGAACCAACGTGTGCCACCAACCGCATGAAACGTTTAGCAGGTTGTACGCTTCCACGGGCACTTGGCATGGTACGTTTCTGTCTGTTGAGTCGCCCAAACCAAGCTGACCGTACTTGTTTCAATCCCAGCAGAAGACATCTCCTTTATCTGTTATGACTGCACTGTGTCGGGCTCCACACGAAACACCTTTTGCATGCTTATTTTCCAATTCCGAGGCTTCTACCAACTTTGGAACAATCTCAGCTTGATCTGATCCAGTTCCCAGCTGCCCAAACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10298#0 TTTTTTTTTTTTTTTTTCAAGCATAACAACTCCTAACTATATATCTCTGGGAGTCAACAT 60 consensus_10298#1 ---------------GTCAGGCATAACA-TTCCTAACTATATATCTCCGGGAGTAAACAT 44 *** ******** ***************** ****** ***** consensus_10298#0 GAAGCACTGTGTAGTTTCTACTATGTTAGTTGCTTTTGTAACCGTTTTATGTACAACAAC 120 consensus_10298#1 GAAGCACTTTGTAGTTTCTACTATGTTAGTTGCTTTTGTAACCGCT------ACAACAAC 98 ******** *********************************** * ******** consensus_10298#0 AGAGCATCATACATTCACCCTAGCGTTCAACAAGGTCTACAGAGGTTATTACTTCTAGTT 180 consensus_10298#1 AGAGCATCACACATTCACC-TAGCTTTCAACAAGGTCTACAGAGGTTATTACTTCTAGTT 157 ********* ********* **** *********************************** consensus_10298#0 GCTACTCTTTGCATATGCACAGCAACAC--------AAGCTTGTTTACATTGCATTGTAA 232 consensus_10298#1 GCTACTCTTTGCGTATGCACAGCAACACTACTACACAACCTTGTTTACATTGCATACTAA 217 ************ *************** ** **************** *** consensus_10298#0 AAAGACAATGAAAAGAATGATATTGCAAGCACTGCCATGTATGCGCATTGGGGCAGTCGG 292 consensus_10298#1 AAAGACAATGAAAAGAATGATATTGCAAGCACAGCCATGTATGTGCATTGGTGCAGTCGT 277 ******************************** ********** ******* ******* consensus_10298#0 GCAGCATGGACAGACAGACCTCAAACCTACCAAATTCCTAGGAGAACCGAAAGCATGCAT 352 consensus_10298#1 GCAGCATGGGCA----GACCTCAAACCTACCAGATTCC----------------ATGCAT 317 ********* ** **************** ***** ****** consensus_10298#0 CTTCAATCTTTCATCAGGTAGGATATTCCGCGAGAACCAACGTGTGCCACCAACCGCATG 412 consensus_10298#1 CTTCAATCTC-CATCAGGTAGGATATTCCACGAGAACCAACGTGTGCCACCAACCGCATG 376 ********* ****************** ****************************** consensus_10298#0 AAACGTTTAGCGGGTTGTACGCTTCCACGGGCACTTGGCATGGTACGTTTCTGTCTGTTG 472 consensus_10298#1 AAACGTTTAGCAGGTTGTACGCTTCCACGGGCACTTGGCATGGTACGTTTCTGTCTGTTG 436 *********** ************************************************ consensus_10298#0 AGTCGCCCAAACCAAGCTGACCGTACTTGTTCCAACCCCAGCAGAAGACATCTCCTTTAT 532 consensus_10298#1 AGTCGCCCAAACCAAGCTGACCGTACTTGTTTCAATCCCAGCAGAAGACATCTCCTTTAT 496 ******************************* *** ************************ consensus_10298#0 CTGTTATGACTGCACTGTGTCGGGCTCCACACGAAACACCTCTTGCATGATTATTTTCCA 592 consensus_10298#1 CTGTTATGACTGCACTGTGTCGGGCTCCACACGAAACACCTTTTGCATGCTTATTTTCCA 556 ***************************************** ******* ********** consensus_10298#0 ATTTCGAGGCTTCTACCAACTTTGGAACAATCTCAGCTTGATCTGATCCAGTTCCCAGCT 652 consensus_10298#1 ATTCCGAGGCTTCTACCAACTTTGGAACAATCTCAGCTTGATCTGATCCAGTTCCCAGCT 616 *** ******************************************************** consensus_10298#0 GCCCAAACTGGTTACCTCCAAAGGAATATACATCACCATCAGCAGATGTACATACAGTAT 712 consensus_10298#1 GCCCAAACT--------------------------------------------------- 625 ********* consensus_10298#0 GCCATAGCCCAGCTGCTACACGTTGTATCTTCACTCCCATAATAGCCGAAACACACGTTG 772 consensus_10298#1 ------------------------------------------------------------ consensus_10298#0 GGCTTAAAATATCATCCGTGTTCCCTTGTCCACACTGTCCATATAATCCCCATCCAAATG 832 consensus_10298#1 ------------------------------------------------------------ consensus_10298#0 TAAGAAGTGTTCCTGAATCTGTCACCACAGCACTATGACGGCCTCCACAGGCAATTGCTT 892 consensus_10298#1 ------------------------------------------------------------ consensus_10298#0 TCACGCAAGTTGCTGCTCTATCATTTGTTCCTTCCAAAGTTCTGCTACCCATCACAATTC 952 consensus_10298#1 ------------------------------------------------------------ consensus_10298#0 CTGTACGGTCCTTGCTGTAGAACGCCGATTGAACACAAGGTATGGGATGTGGGGAGGAAA 1012 consensus_10298#1 ------------------------------------------------------------ consensus_10298#0 CTGTCCGGATCCTAGAGCCTAAACCTAGTTGTCCTTCCCCACCATAGCCCCAACCCCAGA 1072 consensus_10298#1 ------------------------------------------------------------ consensus_10298#0 CCTGACCAAAATCTGAAGCTGACAGCACTAATGTATGACGGCCACCTGCAGCTACTTCCA 1132 consensus_10298#1 ------------------------------------------------------------ consensus_10298#0 CTATCTTCACTCCTGTATTAAATGTCACAACACAAGGTGGTGCTGAAAGATTTTCATCAC 1192 consensus_10298#1 ------------------------------------------------------------ consensus_10298#0 TAGATGATTCACTTTCAGCCCCGTGTTTCGATGAAGATAACCTCCGTCGCTTTGTGCTAT 1252 consensus_10298#1 ------------------------------------------------------------ consensus_10298#0 CCTCAGAACTTCGGCTTTCAGCAGGACCAGATGCTGCCTTGGTGCTTGTCCTAGACACCT 1312 consensus_10298#1 ------------------------------------------------------------ consensus_10298#0 TTGACCTGGGGCTCACTGTAATCGAGTTTCCTTGGTCAGTGGCAACCCCACTTTGCCTTT 1372 consensus_10298#1 ------------------------------------------------------------ consensus_10298#0 TATCACAATCCATAGCCCCAGTTGCAGAATGGTCTGCAATGACCCTTCCAGTTGGAACGC 1432 consensus_10298#1 ------------------------------------------------------------ consensus_10298#0 ATTCTTTCCAACCCCATGTGTAGACATCACCTTTACCTGTTATTGCAACACAATGTGCCC 1492 consensus_10298#1 ------------------------------------------------------------ consensus_10298#0 ATCCAGCGTCAGCCCTTACAATTGCAATATCACTAGGAAGAGGAAATGCCTCCGGAGTTT 1552 consensus_10298#1 ------------------------------------------------------------ consensus_10298#0 CCTCATGCTTCCCAGCAGTCACGTAACTTTGTCCCATATCATCGGTAGAGCCCCAAGTGA 1612 consensus_10298#1 ------------------------------------------------------------ consensus_10298#0 AGAGTTTTCCTTGCTCGGAGACGGCCATCGCGAAGCCGCACCCGCCGCCGGCCACATCCC 1672 consensus_10298#1 ------------------------------------------------------------ consensus_10298#0 TCCACGCATCACCGGCCGCCGCGGCCGCGTCCGGCATCCTCAGGGGCAC 1721 consensus_10298#1 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||